data_8EUL # _model_server_result.job_id EFfHA9sMH4RNuwubGlaBcQ _model_server_result.datetime_utc '2024-11-28 21:55:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8eul # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":509}' # _entry.id 8EUL # _exptl.entry_id 8EUL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8EUL _cell.length_a 67.81 _cell.length_b 67.81 _cell.length_c 456.684 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EUL _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall 'P 61 2 (x,y,z+5/12)' _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 397 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 377 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.355 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8EUL _atom_sites.fract_transf_matrix[1][1] 0.014747 _atom_sites.fract_transf_matrix[1][2] 0.008514 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017028 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00219 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 501 501 HEM HEM . C 3 XGE A 1 502 601 XGE XGE . D 4 EDO A 1 503 701 EDO EDO . E 4 EDO A 1 504 801 EDO EDO . F 4 EDO A 1 505 901 EDO EDO . G 4 EDO A 1 506 1001 EDO EDO . H 4 EDO A 1 507 1101 EDO EDO . I 4 EDO A 1 508 1201 EDO EDO . J 4 EDO A 1 509 1301 EDO EDO . K 4 EDO A 1 510 1401 EDO EDO . L 4 EDO A 1 511 1501 EDO EDO . M 4 EDO A 1 512 1601 EDO EDO . N 5 HOH A 1 601 192 HOH HOH . N 5 HOH A 2 602 134 HOH HOH . N 5 HOH A 3 603 36 HOH HOH . N 5 HOH A 4 604 46 HOH HOH . N 5 HOH A 5 605 125 HOH HOH . N 5 HOH A 6 606 15 HOH HOH . N 5 HOH A 7 607 86 HOH HOH . N 5 HOH A 8 608 123 HOH HOH . N 5 HOH A 9 609 84 HOH HOH . N 5 HOH A 10 610 95 HOH HOH . N 5 HOH A 11 611 25 HOH HOH . N 5 HOH A 12 612 40 HOH HOH . N 5 HOH A 13 613 33 HOH HOH . N 5 HOH A 14 614 104 HOH HOH . N 5 HOH A 15 615 65 HOH HOH . N 5 HOH A 16 616 1 HOH HOH . N 5 HOH A 17 617 128 HOH HOH . N 5 HOH A 18 618 35 HOH HOH . N 5 HOH A 19 619 64 HOH HOH . N 5 HOH A 20 620 196 HOH HOH . N 5 HOH A 21 621 90 HOH HOH . N 5 HOH A 22 622 20 HOH HOH . N 5 HOH A 23 623 37 HOH HOH . N 5 HOH A 24 624 103 HOH HOH . N 5 HOH A 25 625 106 HOH HOH . N 5 HOH A 26 626 162 HOH HOH . N 5 HOH A 27 627 80 HOH HOH . N 5 HOH A 28 628 44 HOH HOH . N 5 HOH A 29 629 31 HOH HOH . N 5 HOH A 30 630 16 HOH HOH . N 5 HOH A 31 631 5 HOH HOH . N 5 HOH A 32 632 56 HOH HOH . N 5 HOH A 33 633 23 HOH HOH . N 5 HOH A 34 634 42 HOH HOH . N 5 HOH A 35 635 2 HOH HOH . N 5 HOH A 36 636 51 HOH HOH . N 5 HOH A 37 637 26 HOH HOH . N 5 HOH A 38 638 107 HOH HOH . N 5 HOH A 39 639 122 HOH HOH . N 5 HOH A 40 640 3 HOH HOH . N 5 HOH A 41 641 85 HOH HOH . N 5 HOH A 42 642 167 HOH HOH . N 5 HOH A 43 643 76 HOH HOH . N 5 HOH A 44 644 18 HOH HOH . N 5 HOH A 45 645 52 HOH HOH . N 5 HOH A 46 646 73 HOH HOH . N 5 HOH A 47 647 88 HOH HOH . N 5 HOH A 48 648 8 HOH HOH . N 5 HOH A 49 649 32 HOH HOH . N 5 HOH A 50 650 58 HOH HOH . N 5 HOH A 51 651 177 HOH HOH . N 5 HOH A 52 652 66 HOH HOH . N 5 HOH A 53 653 160 HOH HOH . N 5 HOH A 54 654 13 HOH HOH . N 5 HOH A 55 655 29 HOH HOH . N 5 HOH A 56 656 34 HOH HOH . N 5 HOH A 57 657 190 HOH HOH . N 5 HOH A 58 658 45 HOH HOH . N 5 HOH A 59 659 28 HOH HOH . N 5 HOH A 60 660 38 HOH HOH . N 5 HOH A 61 661 124 HOH HOH . N 5 HOH A 62 662 191 HOH HOH . N 5 HOH A 63 663 184 HOH HOH . N 5 HOH A 64 664 119 HOH HOH . N 5 HOH A 65 665 77 HOH HOH . N 5 HOH A 66 666 139 HOH HOH . N 5 HOH A 67 667 117 HOH HOH . N 5 HOH A 68 668 126 HOH HOH . N 5 HOH A 69 669 96 HOH HOH . N 5 HOH A 70 670 99 HOH HOH . N 5 HOH A 71 671 57 HOH HOH . N 5 HOH A 72 672 62 HOH HOH . N 5 HOH A 73 673 11 HOH HOH . N 5 HOH A 74 674 61 HOH HOH . N 5 HOH A 75 675 113 HOH HOH . N 5 HOH A 76 676 173 HOH HOH . N 5 HOH A 77 677 17 HOH HOH . N 5 HOH A 78 678 129 HOH HOH . N 5 HOH A 79 679 157 HOH HOH . N 5 HOH A 80 680 136 HOH HOH . N 5 HOH A 81 681 118 HOH HOH . N 5 HOH A 82 682 43 HOH HOH . N 5 HOH A 83 683 112 HOH HOH . N 5 HOH A 84 684 27 HOH HOH . N 5 HOH A 85 685 176 HOH HOH . N 5 HOH A 86 686 92 HOH HOH . N 5 HOH A 87 687 131 HOH HOH . N 5 HOH A 88 688 24 HOH HOH . N 5 HOH A 89 689 70 HOH HOH . N 5 HOH A 90 690 155 HOH HOH . N 5 HOH A 91 691 21 HOH HOH . N 5 HOH A 92 692 14 HOH HOH . N 5 HOH A 93 693 6 HOH HOH . N 5 HOH A 94 694 72 HOH HOH . N 5 HOH A 95 695 68 HOH HOH . N 5 HOH A 96 696 55 HOH HOH . N 5 HOH A 97 697 127 HOH HOH . N 5 HOH A 98 698 98 HOH HOH . N 5 HOH A 99 699 79 HOH HOH . N 5 HOH A 100 700 10 HOH HOH . N 5 HOH A 101 701 105 HOH HOH . N 5 HOH A 102 702 109 HOH HOH . N 5 HOH A 103 703 170 HOH HOH . N 5 HOH A 104 704 54 HOH HOH . N 5 HOH A 105 705 121 HOH HOH . N 5 HOH A 106 706 153 HOH HOH . N 5 HOH A 107 707 75 HOH HOH . N 5 HOH A 108 708 108 HOH HOH . N 5 HOH A 109 709 97 HOH HOH . N 5 HOH A 110 710 4 HOH HOH . N 5 HOH A 111 711 182 HOH HOH . N 5 HOH A 112 712 116 HOH HOH . N 5 HOH A 113 713 48 HOH HOH . N 5 HOH A 114 714 141 HOH HOH . N 5 HOH A 115 715 30 HOH HOH . N 5 HOH A 116 716 9 HOH HOH . N 5 HOH A 117 717 193 HOH HOH . N 5 HOH A 118 718 69 HOH HOH . N 5 HOH A 119 719 60 HOH HOH . N 5 HOH A 120 720 132 HOH HOH . N 5 HOH A 121 721 195 HOH HOH . N 5 HOH A 122 722 102 HOH HOH . N 5 HOH A 123 723 19 HOH HOH . N 5 HOH A 124 724 59 HOH HOH . N 5 HOH A 125 725 89 HOH HOH . N 5 HOH A 126 726 50 HOH HOH . N 5 HOH A 127 727 154 HOH HOH . N 5 HOH A 128 728 83 HOH HOH . N 5 HOH A 129 729 49 HOH HOH . N 5 HOH A 130 730 47 HOH HOH . N 5 HOH A 131 731 74 HOH HOH . N 5 HOH A 132 732 81 HOH HOH . N 5 HOH A 133 733 194 HOH HOH . N 5 HOH A 134 734 150 HOH HOH . N 5 HOH A 135 735 183 HOH HOH . N 5 HOH A 136 736 148 HOH HOH . N 5 HOH A 137 737 82 HOH HOH . N 5 HOH A 138 738 67 HOH HOH . N 5 HOH A 139 739 87 HOH HOH . N 5 HOH A 140 740 41 HOH HOH . N 5 HOH A 141 741 22 HOH HOH . N 5 HOH A 142 742 39 HOH HOH . N 5 HOH A 143 743 53 HOH HOH . N 5 HOH A 144 744 140 HOH HOH . N 5 HOH A 145 745 12 HOH HOH . N 5 HOH A 146 746 7 HOH HOH . N 5 HOH A 147 747 93 HOH HOH . N 5 HOH A 148 748 164 HOH HOH . N 5 HOH A 149 749 144 HOH HOH . N 5 HOH A 150 750 114 HOH HOH . N 5 HOH A 151 751 78 HOH HOH . N 5 HOH A 152 752 100 HOH HOH . N 5 HOH A 153 753 172 HOH HOH . N 5 HOH A 154 754 158 HOH HOH . N 5 HOH A 155 755 110 HOH HOH . N 5 HOH A 156 756 187 HOH HOH . N 5 HOH A 157 757 181 HOH HOH . N 5 HOH A 158 758 180 HOH HOH . N 5 HOH A 159 759 152 HOH HOH . N 5 HOH A 160 760 115 HOH HOH . N 5 HOH A 161 761 166 HOH HOH . N 5 HOH A 162 762 178 HOH HOH . N 5 HOH A 163 763 111 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . J 4 26.995 10.193 110.397 1 54.92 ? C1 EDO 509 A 1 HETATM 2 O O1 EDO . . . J 4 26.338 9.119 109.752 1 57.38 ? O1 EDO 509 A 1 HETATM 3 C C2 EDO . . . J 4 28.318 10.507 109.803 1 55.6 ? C2 EDO 509 A 1 HETATM 4 O O2 EDO . . . J 4 29.104 9.359 109.552 1 54.98 ? O2 EDO 509 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 294 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 696 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #