data_8EUQ # _model_server_result.job_id jIkPOjC-ZZyq604tqQPqgQ _model_server_result.datetime_utc '2024-12-03 00:35:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8euq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":307}' # _entry.id 8EUQ # _exptl.entry_id 8EUQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 7 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8EUQ _cell.length_a 169.15 _cell.length_b 178.72 _cell.length_c 182.04 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EUQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,K,L,M,O,P,Q,R,S,T,U,V 1 1 C,D,G,H,J,N,W,X,Y,Z,AA,BA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 U N N ? 7 AA N N # _pdbx_entity_branch.entity_id 5 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 5 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n I NAG 1 E 1 NAG A 193 NAG 5 n I NAG 2 E 2 NAG A 194 NAG 5 n J NAG 1 J 1 NAG F 190 NAG 5 n J NAG 2 J 2 NAG F 191 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 105 A CYS 107 1_555 A SG CYS 161 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 B SG CYS 23 D CYS 23 1_555 B SG CYS 88 D CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 B SG CYS 134 D CYS 134 1_555 B SG CYS 194 D CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 C SG CYS 105 F CYS 107 1_555 C SG CYS 161 F CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf5 D SG CYS 23 H CYS 23 1_555 D SG CYS 88 H CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf6 D SG CYS 134 H CYS 134 1_555 D SG CYS 194 H CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf7 E SG CYS 42 B CYS 44 1_555 E SG CYS 106 B CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 E SG CYS 144 B CYS 146 1_555 E SG CYS 200 B CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 F SG CYS 22 C CYS 22 1_555 F SG CYS 95 C CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf10 F SG CYS 147 C CYS 140 1_555 F SG CYS 203 C CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf11 G SG CYS 42 G CYS 44 1_555 G SG CYS 106 G CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 G SG CYS 144 G CYS 146 1_555 G SG CYS 200 G CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf13 H SG CYS 22 I CYS 22 1_555 H SG CYS 95 I CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf14 H SG CYS 147 I CYS 140 1_555 H SG CYS 203 I CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 116 A ASN 118 1_555 I C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 C ND2 ASN 116 F ASN 118 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale3 E ND2 ASN 46 B ASN 48 1_555 U C1 NAG . B NAG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale4 G ND2 ASN 46 G ASN 48 1_555 AA C1 NAG . G NAG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale5 I O4 NAG . E NAG 1 1_555 I C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale6 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8EUQ _atom_sites.fract_transf_matrix[1][1] 0.005912 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005595 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005493 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 6 SO4 A 1 201 195 SO4 SO4 . L 6 SO4 A 1 202 196 SO4 SO4 . M 6 SO4 D 1 301 301 SO4 SO4 . N 6 SO4 F 1 201 192 SO4 SO4 . O 6 SO4 B 1 301 228 SO4 SO4 . P 6 SO4 B 1 302 229 SO4 SO4 . Q 6 SO4 B 1 303 231 SO4 SO4 . R 6 SO4 B 1 304 232 SO4 SO4 . S 6 SO4 B 1 305 235 SO4 SO4 . T 6 SO4 B 1 306 236 SO4 SO4 . U 7 NAG B 1 307 237 NAG NAG . V 6 SO4 C 1 301 301 SO4 SO4 . W 6 SO4 G 1 301 301 SO4 SO4 . X 6 SO4 G 1 302 228 SO4 SO4 . Y 6 SO4 G 1 303 229 SO4 SO4 . Z 6 SO4 G 1 304 231 SO4 SO4 . AA 7 NAG G 1 305 232 NAG NAG . BA 6 SO4 I 1 301 301 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . U 7 -18.595 -53.929 -69.65 1 148.69 ? C1 NAG 307 B 1 HETATM 2 C C2 NAG . . . U 7 -18.215 -53.887 -68.164 1 148.92 ? C2 NAG 307 B 1 HETATM 3 C C3 NAG . . . U 7 -16.887 -54.602 -67.929 1 157.42 ? C3 NAG 307 B 1 HETATM 4 C C4 NAG . . . U 7 -16.915 -56.004 -68.534 1 160.98 ? C4 NAG 307 B 1 HETATM 5 C C5 NAG . . . U 7 -17.337 -55.944 -70 1 158.74 ? C5 NAG 307 B 1 HETATM 6 C C6 NAG . . . U 7 -17.483 -57.312 -70.634 1 160.54 ? C6 NAG 307 B 1 HETATM 7 C C7 NAG . . . U 7 -19.115 -51.99 -66.913 1 143.62 ? C7 NAG 307 B 1 HETATM 8 C C8 NAG . . . U 7 -18.913 -50.557 -66.496 1 130.39 ? C8 NAG 307 B 1 HETATM 9 N N2 NAG . . . U 7 -18.158 -52.517 -67.682 1 140.4 ? N2 NAG 307 B 1 HETATM 10 O O3 NAG . . . U 7 -16.654 -54.683 -66.524 1 156.85 ? O3 NAG 307 B 1 HETATM 11 O O4 NAG . . . U 7 -15.635 -56.624 -68.432 1 167.41 ? O4 NAG 307 B 1 HETATM 12 O O5 NAG . . . U 7 -18.611 -55.293 -70.107 1 150.31 ? O5 NAG 307 B 1 HETATM 13 O O6 NAG . . . U 7 -17.5 -57.234 -72.054 1 153.3 ? O6 NAG 307 B 1 HETATM 14 O O7 NAG . . . U 7 -20.101 -52.641 -66.567 1 146.67 ? O7 NAG 307 B 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 52 _model_server_stats.query_time_ms 509 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 14 #