data_8EUX
#
_model_server_result.job_id            vYhyZSMIfnFhUiKH7mN4UQ 
_model_server_result.datetime_utc      '2024-11-13 11:54:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8eux 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":901}' 
#
_entry.id    8EUX 
#
_exptl.entry_id    8EUX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              367.48 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2R,3R,4R,5S)-2-(hydroxymethyl)-1-{5-[4-(2-methoxyethyl)phenyl]pentyl}piperidine-3,4,5-triol 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8EUX 
_cell.length_a            136.929 
_cell.length_b            178.571 
_cell.length_c            180.308 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8EUX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,Q 1 1 
B,J,K,L,M,N,O,P,R 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 656 A CYS 654 1_555 A SG CYS 670 A CYS 668 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf2 B SG CYS 656 B CYS 654 1_555 B SG CYS 670 B CYS 668 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
covale ? covale1 B ND2 ASN 47 B ASN 45 1_555 K C1 NAG . B NAG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.479 ? 
#
_chem_comp.formula           'C20 H33 N O5' 
_chem_comp.formula_weight    367.48 
_chem_comp.id                WV9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2R,3R,4R,5S)-2-(hydroxymethyl)-1-{5-[4-(2-methoxyethyl)phenyl]pentyl}piperidine-3,4,5-triol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 WV9 sing 423 n n 
O5 C20 WV9 sing 424 n n 
C20 C1 WV9 sing 425 n n 
C20 C19 WV9 sing 426 n n 
O3 C4 WV9 sing 427 n n 
C1 C2 WV9 sing 428 n n 
C2 O2 WV9 sing 429 n n 
C2 C3 WV9 sing 430 n n 
C19 N1 WV9 sing 431 n n 
N1 C3 WV9 sing 432 n n 
N1 C5 WV9 sing 433 n n 
C4 C3 WV9 sing 434 n n 
C5 C6 WV9 sing 435 n n 
O4 C16 WV9 sing 436 n n 
O4 C15 WV9 sing 437 n n 
C15 C14 WV9 sing 438 n n 
C6 C7 WV9 sing 439 n n 
C7 C8 WV9 sing 440 n n 
C14 C13 WV9 sing 441 n n 
C13 C12 WV9 doub 442 n y 
C13 C17 WV9 sing 443 n y 
C12 C11 WV9 sing 444 n y 
C17 C18 WV9 doub 445 n y 
C11 C10 WV9 doub 446 n y 
C8 C9 WV9 sing 447 n n 
C18 C10 WV9 sing 448 n y 
C10 C9 WV9 sing 449 n n 
C4 H2 WV9 sing 450 n n 
C4 H3 WV9 sing 451 n n 
C5 H4 WV9 sing 452 n n 
C5 H5 WV9 sing 453 n n 
C6 H6 WV9 sing 454 n n 
C6 H7 WV9 sing 455 n n 
C7 H8 WV9 sing 456 n n 
C7 H9 WV9 sing 457 n n 
C8 H10 WV9 sing 458 n n 
C8 H11 WV9 sing 459 n n 
C15 H12 WV9 sing 460 n n 
C15 H13 WV9 sing 461 n n 
C17 H14 WV9 sing 462 n n 
C20 H15 WV9 sing 463 n n 
C1 H16 WV9 sing 464 n n 
O1 H17 WV9 sing 465 n n 
C2 H18 WV9 sing 466 n n 
O2 H19 WV9 sing 467 n n 
C3 H20 WV9 sing 468 n n 
O3 H21 WV9 sing 469 n n 
O5 H22 WV9 sing 470 n n 
C9 H23 WV9 sing 471 n n 
C9 H24 WV9 sing 472 n n 
C11 H25 WV9 sing 473 n n 
C12 H26 WV9 sing 474 n n 
C14 H27 WV9 sing 475 n n 
C14 H28 WV9 sing 476 n n 
C16 H29 WV9 sing 477 n n 
C16 H30 WV9 sing 478 n n 
C16 H31 WV9 sing 479 n n 
C18 H32 WV9 sing 480 n n 
C19 H33 WV9 sing 481 n n 
C19 H34 WV9 sing 482 n n 
#
_atom_sites.entry_id                     8EUX 
_atom_sites.fract_transf_matrix[1][1]    0.007303 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0056 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005546 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 WV9 A 1 901 901 WV9 LIG . 
D 3 GOL A 1 902 1001 GOL GOL . 
E 4 SO4 A 1 903 1 SO4 SO4 . 
F 4 SO4 A 1 904 2 SO4 SO4 . 
G 4 SO4 A 1 905 3 SO4 SO4 . 
H 4 SO4 A 1 906 4 SO4 SO4 . 
I 4 SO4 A 1 907 5 SO4 SO4 . 
J 2 WV9 B 1 901 901 WV9 LIG . 
K 5 NAG B 1 902 1001 NAG NAG . 
L 3 GOL B 1 903 1101 GOL GOL . 
M 4 SO4 B 1 904 6 SO4 SO4 . 
N 4 SO4 B 1 905 7 SO4 SO4 . 
O 4 SO4 B 1 906 8 SO4 SO4 . 
P 4 SO4 B 1 907 9 SO4 SO4 . 
Q 6 HOH A 1 1001 19 HOH HOH . 
Q 6 HOH A 2 1002 103 HOH HOH . 
Q 6 HOH A 3 1003 169 HOH HOH . 
Q 6 HOH A 4 1004 1 HOH HOH . 
R 6 HOH B 1 1001 91 HOH HOH . 
R 6 HOH B 2 1002 40 HOH HOH . 
R 6 HOH B 3 1003 99 HOH HOH . 
R 6 HOH B 4 1004 68 HOH HOH . 
R 6 HOH B 5 1005 65 HOH HOH . 
R 6 HOH B 6 1006 117 HOH HOH . 
R 6 HOH B 7 1007 5 HOH HOH . 
R 6 HOH B 8 1008 5 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 WV9 . . . J 2 -7.405 -40.353 -32.959 1 53.57 ? N1 WV9 901 B 1 
HETATM 2 C C4 WV9 . . . J 2 -9.243 -41.494 -31.691 1 46.32 ? C4 WV9 901 B 1 
HETATM 3 C C5 WV9 . . . J 2 -8.133 -39.5 -33.367 1 60.81 ? C5 WV9 901 B 1 
HETATM 4 C C6 WV9 . . . J 2 -8.762 -39.779 -34.761 1 58.32 ? C6 WV9 901 B 1 
HETATM 5 C C7 WV9 . . . J 2 -9.615 -38.621 -35.263 1 56.87 ? C7 WV9 901 B 1 
HETATM 6 C C8 WV9 . . . J 2 -9.617 -38.446 -36.805 1 73.88 ? C8 WV9 901 B 1 
HETATM 7 C C10 WV9 . . . J 2 -10.94 -36.23 -37.369 1 93.34 ? C10 WV9 901 B 1 
HETATM 8 C C13 WV9 . . . J 2 -10.887 -33.408 -37.287 1 86.03 ? C13 WV9 901 B 1 
HETATM 9 C C15 WV9 . . . J 2 -9.815 -31.269 -38.182 1 83.56 ? C15 WV9 901 B 1 
HETATM 10 C C17 WV9 . . . J 2 -12.088 -34.122 -37.461 1 91.16 ? C17 WV9 901 B 1 
HETATM 11 C C20 WV9 . . . J 2 -5.256 -41.469 -33.389 1 45.24 ? C20 WV9 901 B 1 
HETATM 12 C C1 WV9 . . . J 2 -5.834 -42.735 -32.915 1 42.99 ? C1 WV9 901 B 1 
HETATM 13 O O1 WV9 . . . J 2 -4.915 -43.466 -32.006 1 39.89 ? O1 WV9 901 B 1 
HETATM 14 C C2 WV9 . . . J 2 -6.995 -42.569 -32.054 1 42.75 ? C2 WV9 901 B 1 
HETATM 15 O O2 WV9 . . . J 2 -7.393 -43.916 -31.787 1 39 ? O2 WV9 901 B 1 
HETATM 16 C C3 WV9 . . . J 2 -8.067 -41.65 -32.678 1 47.19 ? C3 WV9 901 B 1 
HETATM 17 O O3 WV9 . . . J 2 -8.838 -40.654 -30.599 1 48.08 ? O3 WV9 901 B 1 
HETATM 18 O O4 WV9 . . . J 2 -9.656 -29.893 -37.886 1 99.75 ? O4 WV9 901 B 1 
HETATM 19 O O5 WV9 . . . J 2 -4.302 -41.662 -34.468 1 50.24 ? O5 WV9 901 B 1 
HETATM 20 C C9 WV9 . . . J 2 -10.941 -37.789 -37.374 1 90.62 ? C9 WV9 901 B 1 
HETATM 21 C C11 WV9 . . . J 2 -9.737 -35.506 -37.19 1 93.13 ? C11 WV9 901 B 1 
HETATM 22 C C12 WV9 . . . J 2 -9.691 -34.104 -37.149 1 79.52 ? C12 WV9 901 B 1 
HETATM 23 C C14 WV9 . . . J 2 -10.893 -31.866 -37.278 1 78.32 ? C14 WV9 901 B 1 
HETATM 24 C C16 WV9 . . . J 2 -8.956 -29.502 -36.732 1 94.23 ? C16 WV9 901 B 1 
HETATM 25 C C18 WV9 . . . J 2 -12.136 -35.53 -37.512 1 85.3 ? C18 WV9 901 B 1 
HETATM 26 C C19 WV9 . . . J 2 -6.331 -40.529 -33.921 1 47.59 ? C19 WV9 901 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    45 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           26 
#