data_8EVU # _model_server_result.job_id uMRkPPPup6VKROrW4fZk4A _model_server_result.datetime_utc '2024-10-11 21:50:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8evu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":601}' # _entry.id 8EVU # _exptl.entry_id 8EVU _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 376.364 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RIBOFLAVIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8EVU _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EVU _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B OG1 THR 236 B THR 236 1_555 G P FMN . B FMN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale2 C OG1 THR 225 C THR 225 1_555 J P FMN . C FMN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? metalc ? metalc1 D SG CYS 29 D CYS 29 1_555 K FE2 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc2 D SG CYS 112 D CYS 112 1_555 K FE1 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc3 E SG CYS 26 E CYS 26 1_555 K FE1 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc4 E SG CYS 120 E CYS 120 1_555 K FE2 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? # _chem_comp.formula 'C17 H20 N4 O6' _chem_comp.formula_weight 376.364 _chem_comp.id RBF _chem_comp.mon_nstd_flag . _chem_comp.name RIBOFLAVIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVINE;VITAMIN B2' # _atom_sites.entry_id 8EVU _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 7 FMN B 1 600 600 FMN FMN . H 8 RBF B 1 601 601 RBF RBF . I 9 UQ1 B 1 602 602 UQ1 UQ1 . J 7 FMN C 1 301 301 FMN FMN . K 10 FES E 1 301 301 FES FES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 RBF . . . H 8 177.915 206.881 203.049 1 41.16 ? N1 RBF 601 B 1 HETATM 2 C C2 RBF . . . H 8 178.425 206.032 203.965 1 38.44 ? C2 RBF 601 B 1 HETATM 3 O O2 RBF . . . H 8 179.601 206.117 204.319 1 42.79 ? O2 RBF 601 B 1 HETATM 4 N N3 RBF . . . H 8 177.678 205.056 204.535 1 35.67 ? N3 RBF 601 B 1 HETATM 5 C C4 RBF . . . H 8 176.358 204.872 204.213 1 38.59 ? C4 RBF 601 B 1 HETATM 6 O O4 RBF . . . H 8 175.721 203.98 204.753 1 43.44 ? O4 RBF 601 B 1 HETATM 7 C C4A RBF . . . H 8 175.787 205.736 203.262 1 37.67 ? C4A RBF 601 B 1 HETATM 8 N N5 RBF . . . H 8 174.529 205.576 202.947 1 42.22 ? N5 RBF 601 B 1 HETATM 9 C C5A RBF . . . H 8 173.997 206.433 202.022 1 40.71 ? C5A RBF 601 B 1 HETATM 10 C C6 RBF . . . H 8 172.644 206.276 201.676 1 36.85 ? C6 RBF 601 B 1 HETATM 11 C C7 RBF . . . H 8 172.038 207.1 200.758 1 40.86 ? C7 RBF 601 B 1 HETATM 12 C C7M RBF . . . H 8 170.585 206.903 200.412 1 36.39 ? C7M RBF 601 B 1 HETATM 13 C C8 RBF . . . H 8 172.794 208.126 200.142 1 41.75 ? C8 RBF 601 B 1 HETATM 14 C C8M RBF . . . H 8 172.155 209.041 199.129 1 40.63 ? C8M RBF 601 B 1 HETATM 15 C C9 RBF . . . H 8 174.122 208.291 200.474 1 36.73 ? C9 RBF 601 B 1 HETATM 16 C C9A RBF . . . H 8 174.751 207.456 201.413 1 37.47 ? C9A RBF 601 B 1 HETATM 17 N N10 RBF . . . H 8 176.092 207.59 201.769 1 36.11 ? N10 RBF 601 B 1 HETATM 18 C C10 RBF . . . H 8 176.652 206.744 202.71 1 39.83 ? C10 RBF 601 B 1 HETATM 19 C C1' RBF . . . H 8 176.916 208.653 201.161 1 39.57 ? C1' RBF 601 B 1 HETATM 20 C C2' RBF . . . H 8 177.591 208.233 199.854 1 42.69 ? C2' RBF 601 B 1 HETATM 21 O O2' RBF . . . H 8 176.615 207.885 198.879 1 46.43 ? O2' RBF 601 B 1 HETATM 22 C C3' RBF . . . H 8 178.558 207.06 200.035 1 42.44 ? C3' RBF 601 B 1 HETATM 23 O O3' RBF . . . H 8 179.515 207.395 201.032 1 48.91 ? O3' RBF 601 B 1 HETATM 24 C C4' RBF . . . H 8 179.296 206.63 198.766 1 44.26 ? C4' RBF 601 B 1 HETATM 25 O O4' RBF . . . H 8 179.953 205.384 199.002 1 45.96 ? O4' RBF 601 B 1 HETATM 26 C C5' RBF . . . H 8 180.317 207.655 198.323 1 43.91 ? C5' RBF 601 B 1 HETATM 27 O O5' RBF . . . H 8 181.045 207.199 197.187 1 49.59 ? O5' RBF 601 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #