data_8EW7 # _model_server_result.job_id 3SOsUOluOZyxh-58NHSxGQ _model_server_result.datetime_utc '2024-12-26 17:54:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ew7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":1005}' # _entry.id 8EW7 # _exptl.entry_id 8EW7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 228.371 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MYRISTIC ACID' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.04 _cell.angle_gamma 90 _cell.entry_id 8EW7 _cell.length_a 166.104 _cell.length_b 38.301 _cell.length_c 96.719 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EW7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 K N N ? 3 L N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 A CYS 53 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 90 A CYS 90 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf4 A SG CYS 124 A CYS 124 1_555 A SG CYS 169 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf5 A SG CYS 168 A CYS 168 1_555 A SG CYS 177 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf6 A SG CYS 200 A CYS 200 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 A SG CYS 245 A CYS 245 1_555 A SG CYS 253 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf8 A SG CYS 265 A CYS 265 1_555 A SG CYS 279 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf9 A SG CYS 278 A CYS 278 1_555 A SG CYS 289 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf10 A SG CYS 316 A CYS 316 1_555 A SG CYS 361 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf11 A SG CYS 360 A CYS 360 1_555 A SG CYS 369 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf12 A SG CYS 392 A CYS 392 1_555 A SG CYS 438 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf13 A SG CYS 437 A CYS 437 1_555 A SG CYS 448 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf14 A SG CYS 461 A CYS 461 1_555 A SG CYS 477 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf15 A SG CYS 476 A CYS 476 1_555 A SG CYS 487 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf16 A SG CYS 514 A CYS 514 1_555 A SG CYS 559 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf17 A SG CYS 558 A CYS 558 1_555 A SG CYS 567 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc1 A N ALA 2 A ALA 2 1_555 H CO CO . A CO 613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc2 A NE2 HIS 9 A HIS 9 1_555 C CO CO . A CO 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc3 A OD2 ASP 13 A ASP 13 1_555 C CO CO . A CO 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc4 A OE1 GLU 57 A GLU 57 1_555 H CO CO . A CO 613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc5 A OE2 GLU 57 A GLU 57 1_555 H CO CO . A CO 613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc6 A NE2 HIS 67 A HIS 67 1_555 B CO CO . A CO 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc7 A NE2 HIS 128 A HIS 128 1_555 E CO CO . A CO 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc8 A NE2 HIS 146 A HIS 146 1_555 I CO CO . A CO 614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc9 A OD2 ASP 249 A ASP 249 1_555 B CO CO . A CO 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc10 A OE2 GLU 252 A GLU 252 1_555 D CO CO . A CO 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.884 ? metalc ? metalc11 A OE1 GLU 311 A GLU 311 1_555 J CO CO . A CO 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc12 A OE2 GLU 311 A GLU 311 1_555 J CO CO . A CO 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc13 A NE2 HIS 440 A HIS 440 1_555 G CO CO . A CO 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc14 C CO CO . A CO 604 1_555 N O HOH . A HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc15 C CO CO . A CO 604 1_555 N O HOH . A HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc16 C CO CO . A CO 604 1_555 N O HOH . A HOH 2033 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc17 C CO CO . A CO 604 1_555 N O HOH . A HOH 2035 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc18 D CO CO . A CO 608 1_555 N O HOH . A HOH 2047 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc19 E CO CO . A CO 609 1_555 N O HOH . A HOH 2008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc20 E CO CO . A CO 609 1_555 N O HOH . A HOH 2036 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc21 E CO CO . A CO 609 1_555 N O HOH . A HOH 2039 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? metalc ? metalc22 E CO CO . A CO 609 1_555 N O HOH . A HOH 2048 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc23 E CO CO . A CO 609 1_555 N O HOH . A HOH 2049 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc24 G CO CO . A CO 611 1_555 N O HOH . A HOH 2040 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc25 H CO CO . A CO 613 1_555 N O HOH . A HOH 2034 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc26 H CO CO . A CO 613 1_555 N O HOH . A HOH 2043 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc27 H CO CO . A CO 613 1_555 N O HOH . A HOH 2044 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc28 J CO CO . A CO 615 1_555 N O HOH . A HOH 2046 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? # _chem_comp.formula 'C14 H28 O2' _chem_comp.formula_weight 228.371 _chem_comp.id MYR _chem_comp.mon_nstd_flag . _chem_comp.name 'MYRISTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MYR doub 237 n n C1 O2 MYR sing 238 n n C1 C2 MYR sing 239 n n O2 HO2 MYR sing 240 n n C2 C3 MYR sing 241 n n C2 H21 MYR sing 242 n n C2 H22 MYR sing 243 n n C3 C4 MYR sing 244 n n C3 H31 MYR sing 245 n n C3 H32 MYR sing 246 n n C4 C5 MYR sing 247 n n C4 H41 MYR sing 248 n n C4 H42 MYR sing 249 n n C5 C6 MYR sing 250 n n C5 H51 MYR sing 251 n n C5 H52 MYR sing 252 n n C6 C7 MYR sing 253 n n C6 H61 MYR sing 254 n n C6 H62 MYR sing 255 n n C7 C8 MYR sing 256 n n C7 H71 MYR sing 257 n n C7 H72 MYR sing 258 n n C8 C9 MYR sing 259 n n C8 H81 MYR sing 260 n n C8 H82 MYR sing 261 n n C9 C10 MYR sing 262 n n C9 H91 MYR sing 263 n n C9 H92 MYR sing 264 n n C10 C11 MYR sing 265 n n C10 H101 MYR sing 266 n n C10 H102 MYR sing 267 n n C11 C12 MYR sing 268 n n C11 H111 MYR sing 269 n n C11 H112 MYR sing 270 n n C12 C13 MYR sing 271 n n C12 H121 MYR sing 272 n n C12 H122 MYR sing 273 n n C13 C14 MYR sing 274 n n C13 H131 MYR sing 275 n n C13 H132 MYR sing 276 n n C14 H141 MYR sing 277 n n C14 H142 MYR sing 278 n n C14 H143 MYR sing 279 n n # _atom_sites.entry_id 8EW7 _atom_sites.fract_transf_matrix[1][1] 0.00602 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001617 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026109 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010706 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CO A 1 602 602 CO CO . C 2 CO A 1 604 604 CO CO . D 2 CO A 1 608 608 CO CO . E 2 CO A 1 609 609 CO CO . F 2 CO A 1 610 610 CO CO . G 2 CO A 1 611 611 CO CO . H 2 CO A 1 613 613 CO CO . I 2 CO A 1 614 614 CO CO . J 2 CO A 1 615 615 CO CO . K 3 MYR A 1 1003 1003 MYR MYR . L 3 MYR A 1 1004 1004 MYR MYR . M 3 MYR A 1 1005 1005 MYR MYR . N 4 HOH A 1 2001 2001 HOH HOH . N 4 HOH A 2 2002 2002 HOH HOH . N 4 HOH A 3 2003 2003 HOH HOH . N 4 HOH A 4 2004 2004 HOH HOH . N 4 HOH A 5 2005 2005 HOH HOH . N 4 HOH A 6 2006 2006 HOH HOH . N 4 HOH A 7 2007 2007 HOH HOH . N 4 HOH A 8 2008 2008 HOH HOH . N 4 HOH A 9 2009 2009 HOH HOH . N 4 HOH A 10 2010 2010 HOH HOH . N 4 HOH A 11 2011 2011 HOH HOH . N 4 HOH A 12 2012 2012 HOH HOH . N 4 HOH A 13 2014 2014 HOH HOH . N 4 HOH A 14 2015 2015 HOH HOH . N 4 HOH A 15 2016 2016 HOH HOH . N 4 HOH A 16 2017 2017 HOH HOH . N 4 HOH A 17 2018 2018 HOH HOH . N 4 HOH A 18 2019 2019 HOH HOH . N 4 HOH A 19 2020 2020 HOH HOH . N 4 HOH A 20 2021 2021 HOH HOH . N 4 HOH A 21 2022 2022 HOH HOH . N 4 HOH A 22 2024 2024 HOH HOH . N 4 HOH A 23 2025 2025 HOH HOH . N 4 HOH A 24 2026 2026 HOH HOH . N 4 HOH A 25 2027 2027 HOH HOH . N 4 HOH A 26 2028 2028 HOH HOH . N 4 HOH A 27 2029 2029 HOH HOH . N 4 HOH A 28 2030 2030 HOH HOH . N 4 HOH A 29 2032 2032 HOH HOH . N 4 HOH A 30 2033 2033 HOH HOH . N 4 HOH A 31 2034 2034 HOH HOH . N 4 HOH A 32 2035 2035 HOH HOH . N 4 HOH A 33 2036 2036 HOH HOH . N 4 HOH A 34 2039 2039 HOH HOH . N 4 HOH A 35 2040 2040 HOH HOH . N 4 HOH A 36 2041 2041 HOH HOH . N 4 HOH A 37 2042 2042 HOH HOH . N 4 HOH A 38 2043 2043 HOH HOH . N 4 HOH A 39 2044 2044 HOH HOH . N 4 HOH A 40 2045 2045 HOH HOH . N 4 HOH A 41 2046 2046 HOH HOH . N 4 HOH A 42 2047 2047 HOH HOH . N 4 HOH A 43 2048 2048 HOH HOH . N 4 HOH A 44 2049 2049 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MYR . . . M 3 0.202 21.053 38.165 1 31.91 ? C1 MYR 1005 A 1 HETATM 2 O O1 MYR . . . M 3 1.19 21.808 38.175 1 32.39 ? O1 MYR 1005 A 1 HETATM 3 O O2 MYR . . . M 3 -0.879 21.344 38.736 1 33.23 ? O2 MYR 1005 A 1 HETATM 4 C C2 MYR . . . M 3 0.336 19.727 37.423 1 30.33 ? C2 MYR 1005 A 1 HETATM 5 C C3 MYR . . . M 3 -0.56 18.591 37.869 1 29.37 ? C3 MYR 1005 A 1 HETATM 6 C C4 MYR . . . M 3 0.19 17.404 38.469 1 27.92 ? C4 MYR 1005 A 1 HETATM 7 C C5 MYR . . . M 3 -0.513 16.066 38.298 1 27.09 ? C5 MYR 1005 A 1 HETATM 8 C C6 MYR . . . M 3 -0.73 15.277 39.569 1 26.19 ? C6 MYR 1005 A 1 HETATM 9 C C7 MYR . . . M 3 -2.025 14.509 39.593 1 25.66 ? C7 MYR 1005 A 1 HETATM 10 C C8 MYR . . . M 3 -2.059 13.368 40.568 1 25.33 ? C8 MYR 1005 A 1 HETATM 11 C C9 MYR . . . M 3 -3.367 13.238 41.305 1 25.57 ? C9 MYR 1005 A 1 HETATM 12 C C10 MYR . . . M 3 -3.56 11.911 42.003 1 25.8 ? C10 MYR 1005 A 1 HETATM 13 C C11 MYR . . . M 3 -3.906 10.757 41.089 1 25.39 ? C11 MYR 1005 A 1 HETATM 14 C C12 MYR . . . M 3 -4.423 9.531 41.81 1 25.13 ? C12 MYR 1005 A 1 HETATM 15 C C13 MYR . . . M 3 -4.657 8.331 40.927 1 24.8 ? C13 MYR 1005 A 1 HETATM 16 C C14 MYR . . . M 3 -5.814 8.493 39.974 1 24.47 ? C14 MYR 1005 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 16 #