data_8EWM
#
_model_server_result.job_id            PeLS8SbAkROqQYL3yLMbCA 
_model_server_result.datetime_utc      '2024-10-20 07:32:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ewm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":602}' 
#
_entry.id    8EWM 
#
_exptl.entry_id    8EWM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              1004.042 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "{tert-butyl [1-{[([2,2'-bipyridin]-5-yl-kappa~2~N~1~,N~1'~)methylidene]amino}-1-oxo-3-(pyridin-4-yl)propan-2-yl]carbamate}bis[3,5-difluoro-2-(pyridin-2-yl-kappaN)phenyl-kappaC~1~]iridium(1+)" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8EWM 
_cell.length_a            75.467 
_cell.length_b            98.062 
_cell.length_c            133.003 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8EWM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D 1 1 
A,B,C,D 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N53 X1I . A X1I 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.933 ? 
#
_chem_comp.formula           'C46 H37 F4 Ir N7 O3 1' 
_chem_comp.formula_weight    1004.042 
_chem_comp.id                X1I 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "{tert-butyl [1-{[([2,2'-bipyridin]-5-yl-kappa~2~N~1~,N~1'~)methylidene]amino}-1-oxo-3-(pyridin-4-yl)propan-2-yl]carbamate}bis[3,5-difluoro-2-(pyridin-2-yl-kappaN)phenyl-kappaC~1~]iridium(1+)" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
F10 C02 X1I sing 458 n n 
C02 C05 X1I doub 459 n y 
C02 C06 X1I sing 460 n y 
C05 C04 X1I sing 461 n y 
C52 C51 X1I doub 462 n y 
C52 N53 X1I sing 463 n y 
C42 N43 X1I doub 464 n n 
C42 C37 X1I sing 465 n n 
C61 C57 X1I sing 466 n n 
C13 C14 X1I doub 467 n y 
C13 C09 X1I sing 468 n y 
N43 C44 X1I sing 469 n n 
C51 C47 X1I sing 470 n y 
C60 C57 X1I sing 471 n n 
C14 C11 X1I sing 472 n y 
C06 C09 X1I sing 473 n n 
C06 C03 X1I doub 474 n y 
C57 O56 X1I sing 475 n n 
C57 C59 X1I sing 476 n n 
C09 N12 X1I doub 477 n y 
N53 C49 X1I doub 478 n y 
C04 F08 X1I sing 479 n n 
C04 C01 X1I doub 480 n y 
C37 C41 X1I doub 481 n y 
C37 C40 X1I sing 482 n y 
C44 C45 X1I sing 483 n n 
C44 O48 X1I doub 484 n n 
C47 C46 X1I sing 485 n n 
C47 C50 X1I doub 486 n y 
O56 C55 X1I sing 487 n n 
C45 C46 X1I sing 488 n n 
C45 N54 X1I sing 489 n n 
C11 C15 X1I doub 490 n y 
C41 N38 X1I sing 491 n y 
C40 C39 X1I doub 492 n y 
C03 C01 X1I sing 493 n y 
C03 IR07 X1I sing 494 n n 
N12 C15 X1I sing 495 n y 
N12 IR07 X1I sing 496 n n 
C49 C50 X1I sing 497 n y 
C55 N54 X1I sing 498 n n 
C55 O58 X1I doub 499 n n 
N38 C36 X1I doub 500 n y 
N38 IR07 X1I sing 501 n n 
C39 C36 X1I sing 502 n y 
F25 C22 X1I sing 503 n n 
C19 C22 X1I doub 504 n y 
C19 C17 X1I sing 505 n y 
C36 C33 X1I sing 506 n n 
IR07 C17 X1I sing 507 n n 
IR07 N16 X1I sing 508 n n 
IR07 N27 X1I sing 509 n n 
C22 C18 X1I sing 510 n y 
C17 C20 X1I doub 511 n y 
C33 N16 X1I doub 512 n y 
C33 C34 X1I sing 513 n y 
N16 C32 X1I sing 514 n y 
C18 C21 X1I doub 515 n y 
N27 C30 X1I doub 516 n y 
N27 C23 X1I sing 517 n y 
C20 C21 X1I sing 518 n y 
C20 C23 X1I sing 519 n n 
C34 C31 X1I doub 520 n y 
C30 C26 X1I sing 521 n y 
C21 F24 X1I sing 522 n n 
C23 C28 X1I doub 523 n y 
C32 C35 X1I doub 524 n y 
C31 C35 X1I sing 525 n y 
C26 C29 X1I doub 526 n y 
C28 C29 X1I sing 527 n y 
C01 H1 X1I sing 528 n n 
C05 H2 X1I sing 529 n n 
C11 H3 X1I sing 530 n n 
C13 H4 X1I sing 531 n n 
C14 H5 X1I sing 532 n n 
C15 H6 X1I sing 533 n n 
C18 H7 X1I sing 534 n n 
C19 H8 X1I sing 535 n n 
C26 H9 X1I sing 536 n n 
C28 H10 X1I sing 537 n n 
C29 H11 X1I sing 538 n n 
C30 H12 X1I sing 539 n n 
C31 H13 X1I sing 540 n n 
C32 H14 X1I sing 541 n n 
C34 H15 X1I sing 542 n n 
C35 H16 X1I sing 543 n n 
C39 H17 X1I sing 544 n n 
C40 H18 X1I sing 545 n n 
C41 H19 X1I sing 546 n n 
C42 H20 X1I sing 547 n n 
C45 H21 X1I sing 548 n n 
C46 H22 X1I sing 549 n n 
C46 H23 X1I sing 550 n n 
C49 H24 X1I sing 551 n n 
C50 H25 X1I sing 552 n n 
C51 H26 X1I sing 553 n n 
C52 H27 X1I sing 554 n n 
C59 H28 X1I sing 555 n n 
C59 H29 X1I sing 556 n n 
C59 H30 X1I sing 557 n n 
C60 H31 X1I sing 558 n n 
C60 H32 X1I sing 559 n n 
C60 H33 X1I sing 560 n n 
C61 H34 X1I sing 561 n n 
C61 H35 X1I sing 562 n n 
C61 H36 X1I sing 563 n n 
N54 H37 X1I sing 564 n n 
#
_atom_sites.entry_id                     8EWM 
_atom_sites.fract_transf_matrix[1][1]    0.013251 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010198 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007519 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 500 HEM HEM . 
C 3 X1I A 1 602 700 X1I 175 . 
D 4 HOH A 1 701 1 HOH HOH . 
D 4 HOH A 2 702 3 HOH HOH . 
D 4 HOH A 3 703 2 HOH HOH . 
D 4 HOH A 4 704 6 HOH HOH . 
D 4 HOH A 5 705 5 HOH HOH . 
D 4 HOH A 6 706 4 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 X1I . . . C 3 -24.291 -15.622 -9.775 1 156.58 ? C01 X1I 602 A 1 
HETATM 2 C C02 X1I . . . C 3 -25.767 -15.334 -12.14 1 153.66 ? C02 X1I 602 A 1 
HETATM 3 C C03 X1I . . . C 3 -25.589 -16.141 -9.87 1 159.14 ? C03 X1I 602 A 1 
HETATM 4 C C04 X1I . . . C 3 -23.744 -14.956 -10.885 1 153.75 ? C04 X1I 602 A 1 
HETATM 5 C C05 X1I . . . C 3 -24.472 -14.806 -12.074 1 154.13 ? C05 X1I 602 A 1 
HETATM 6 C C06 X1I . . . C 3 -26.338 -16.002 -11.049 1 155.78 ? C06 X1I 602 A 1 
HETATM 7 C C09 X1I . . . C 3 -27.7 -16.611 -10.982 1 157.61 ? C09 X1I 602 A 1 
HETATM 8 C C11 X1I . . . C 3 -30.155 -17.825 -10.567 1 155.81 ? C11 X1I 602 A 1 
HETATM 9 C C13 X1I . . . C 3 -28.656 -16.62 -12.007 1 156.59 ? C13 X1I 602 A 1 
HETATM 10 C C14 X1I . . . C 3 -29.904 -17.23 -11.81 1 154.52 ? C14 X1I 602 A 1 
HETATM 11 C C15 X1I . . . C 3 -29.16 -17.778 -9.585 1 159.04 ? C15 X1I 602 A 1 
HETATM 12 C C17 X1I . . . C 3 -26.919 -15.232 -7.824 1 160.26 ? C17 X1I 602 A 1 
HETATM 13 C C18 X1I . . . C 3 -27.3 -12.636 -6.879 1 153.78 ? C18 X1I 602 A 1 
HETATM 14 C C19 X1I . . . C 3 -27.744 -14.35 -8.541 1 157.23 ? C19 X1I 602 A 1 
HETATM 15 C C20 X1I . . . C 3 -26.274 -14.832 -6.653 1 157.83 ? C20 X1I 602 A 1 
HETATM 16 C C21 X1I . . . C 3 -26.474 -13.527 -6.182 1 153.06 ? C21 X1I 602 A 1 
HETATM 17 C C22 X1I . . . C 3 -27.934 -13.047 -8.057 1 156.26 ? C22 X1I 602 A 1 
HETATM 18 C C23 X1I . . . C 3 -25.439 -15.916 -6.058 1 157.12 ? C23 X1I 602 A 1 
HETATM 19 C C26 X1I . . . C 3 -23.976 -18.075 -5.164 1 154.13 ? C26 X1I 602 A 1 
HETATM 20 C C28 X1I . . . C 3 -24.69 -15.799 -4.882 1 154.38 ? C28 X1I 602 A 1 
HETATM 21 C C29 X1I . . . C 3 -23.945 -16.889 -4.418 1 153.81 ? C29 X1I 602 A 1 
HETATM 22 C C30 X1I . . . C 3 -24.746 -18.126 -6.331 1 153.42 ? C30 X1I 602 A 1 
HETATM 23 C C31 X1I . . . C 3 -28.911 -19.95 -5.345 1 156.82 ? C31 X1I 602 A 1 
HETATM 24 C C32 X1I . . . C 3 -28.238 -17.729 -6.019 1 157.68 ? C32 X1I 602 A 1 
HETATM 25 C C33 X1I . . . C 3 -27.556 -19.55 -7.285 1 156.87 ? C33 X1I 602 A 1 
HETATM 26 C C34 X1I . . . C 3 -28.215 -20.449 -6.443 1 155.69 ? C34 X1I 602 A 1 
HETATM 27 C C35 X1I . . . C 3 -28.922 -18.571 -5.133 1 156.54 ? C35 X1I 602 A 1 
HETATM 28 C C36 X1I . . . C 3 -26.787 -19.961 -8.478 1 155.72 ? C36 X1I 602 A 1 
HETATM 29 C C37 X1I . . . C 3 -25.323 -20.487 -10.736 1 149.88 ? C37 X1I 602 A 1 
HETATM 30 C C39 X1I . . . C 3 -26.637 -21.286 -8.889 1 151.81 ? C39 X1I 602 A 1 
HETATM 31 C C40 X1I . . . C 3 -25.888 -21.552 -10.033 1 149.92 ? C40 X1I 602 A 1 
HETATM 32 C C41 X1I . . . C 3 -25.506 -19.183 -10.257 1 153.27 ? C41 X1I 602 A 1 
HETATM 33 C C42 X1I . . . C 3 -24.477 -20.741 -11.99 1 149.02 ? C42 X1I 602 A 1 
HETATM 34 C C44 X1I . . . C 3 -22.405 -21.187 -10.642 1 141.34 ? C44 X1I 602 A 1 
HETATM 35 C C45 X1I . . . C 3 -20.933 -21.572 -10.468 1 134.25 ? C45 X1I 602 A 1 
HETATM 36 C C46 X1I . . . C 3 -20.688 -23.086 -10.481 1 130.85 ? C46 X1I 602 A 1 
HETATM 37 C C47 X1I . . . C 3 -19.168 -23.098 -10.633 1 125.83 ? C47 X1I 602 A 1 
HETATM 38 C C49 X1I . . . C 3 -16.949 -23.193 -9.73 1 126.5 ? C49 X1I 602 A 1 
HETATM 39 C C50 X1I . . . C 3 -18.331 -23.22 -9.525 1 126.22 ? C50 X1I 602 A 1 
HETATM 40 C C51 X1I . . . C 3 -18.62 -22.902 -11.899 1 122.83 ? C51 X1I 602 A 1 
HETATM 41 C C52 X1I . . . C 3 -17.232 -22.881 -12.037 1 119.97 ? C52 X1I 602 A 1 
HETATM 42 C C55 X1I . . . C 3 -19.867 -19.715 -9.133 1 130.34 ? C55 X1I 602 A 1 
HETATM 43 C C57 X1I . . . C 3 -18.644 -18.56 -11.044 1 126.44 ? C57 X1I 602 A 1 
HETATM 44 C C59 X1I . . . C 3 -17.714 -17.967 -9.971 1 137.51 ? C59 X1I 602 A 1 
HETATM 45 C C60 X1I . . . C 3 -17.852 -19.565 -11.898 1 121.42 ? C60 X1I 602 A 1 
HETATM 46 C C61 X1I . . . C 3 -19.131 -17.419 -11.955 1 131.43 ? C61 X1I 602 A 1 
HETATM 47 F F08 X1I . . . C 3 -22.494 -14.449 -10.813 1 147.83 ? F08 X1I 602 A 1 
HETATM 48 F F10 X1I . . . C 3 -26.448 -15.175 -13.296 1 148.58 ? F10 X1I 602 A 1 
HETATM 49 F F24 X1I . . . C 3 -25.883 -13.096 -5.049 1 147.75 ? F24 X1I 602 A 1 
HETATM 50 F F25 X1I . . . C 3 -28.731 -12.185 -8.727 1 155.62 ? F25 X1I 602 A 1 
HETATM 51 N N12 X1I . . . C 3 -27.984 -17.183 -9.817 1 160.11 ? N12 X1I 602 A 1 
HETATM 52 N N16 X1I . . . C 3 -27.584 -18.232 -7.071 1 157.65 ? N16 X1I 602 A 1 
HETATM 53 N N27 X1I . . . C 3 -25.424 -17.057 -6.759 1 153.98 ? N27 X1I 602 A 1 
HETATM 54 N N38 X1I . . . C 3 -26.221 -18.958 -9.147 1 154.92 ? N38 X1I 602 A 1 
HETATM 55 N N43 X1I . . . C 3 -23.188 -21.107 -11.894 1 146.32 ? N43 X1I 602 A 1 
HETATM 56 N N53 X1I . . . C 3 -16.445 -23.025 -10.961 1 122.96 ? N53 X1I 602 A 1 
HETATM 57 N N54 X1I . . . C 3 -20.523 -21.027 -9.166 1 134.77 ? N54 X1I 602 A 1 
HETATM 58 O O48 X1I . . . C 3 -22.924 -20.897 -9.59 1 146.66 ? O48 X1I 602 A 1 
HETATM 59 O O56 X1I . . . C 3 -19.791 -19.205 -10.471 1 128.67 ? O56 X1I 602 A 1 
HETATM 60 O O58 X1I . . . C 3 -19.497 -19.172 -8.118 1 128.2 ? O58 X1I 602 A 1 
HETATM 61 IR IR07 X1I . . . C 3 -26.567 -17.126 -8.407 1 192.51 ? IR07 X1I 602 A 1 
#
_model_server_stats.io_time_ms              52 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           61 
#