data_8EWV
#
_model_server_result.job_id            NGDV29XaE3RsDtlPYfu21g 
_model_server_result.datetime_utc      '2024-10-19 03:48:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ewv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"DA","auth_seq_id":501}' 
#
_entry.id    8EWV 
#
_exptl.entry_id    8EWV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              940.211 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-{3-[1-(4-{[3-(cyclopropylamino)-3-oxopropyl](methyl)amino}-6-{methyl[(1,3,5-trimethyl-1H-pyrazol-4-yl)methyl]amino}-1,3,5-triazin-2-yl)piperidin-4-yl]propanoyl}-3-methyl-L-valyl-(4R)-4-hydroxy-N-{[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methyl}-L-prolinamide 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8EWV 
_cell.length_a            110.485 
_cell.length_b            164.048 
_cell.length_c            256.202 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8EWV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? tetrameric 4 author_defined_assembly 1 
? tetrameric 4 author_defined_assembly 2 
? tetrameric 4 author_defined_assembly 3 
? tetrameric 4 author_defined_assembly 4 
? tetrameric 4 author_defined_assembly 5 
? tetrameric 4 author_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,Y 1 1 
E,F,G,H,Z 2 1 
I,J,K,L,AA 3 1 
M,N,O,P,BA 4 1 
Q,R,S,T,CA 5 1 
U,V,W,X,DA 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 Y N N 
? 5 Z N N 
? 5 AA N N 
? 5 BA N N 
? 5 CA N N 
? 5 DA N N 
#
_chem_comp.formula           'C48 H69 N13 O5 S' 
_chem_comp.formula_weight    940.211 
_chem_comp.id                X5K 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-{3-[1-(4-{[3-(cyclopropylamino)-3-oxopropyl](methyl)amino}-6-{methyl[(1,3,5-trimethyl-1H-pyrazol-4-yl)methyl]amino}-1,3,5-triazin-2-yl)piperidin-4-yl]propanoyl}-3-methyl-L-valyl-(4R)-4-hydroxy-N-{[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methyl}-L-prolinamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O53 C51 X5K doub 374 n n 
C51 C50 X5K sing 375 n n 
C51 N52 X5K sing 376 n n 
C50 C48 X5K sing 377 n n 
C54 N52 X5K sing 378 n n 
C54 C57 X5K sing 379 n n 
C54 C56 X5K sing 380 n n 
C48 N47 X5K sing 381 n n 
C57 C56 X5K sing 382 n n 
C49 N47 X5K sing 383 n n 
N47 C45 X5K sing 384 n n 
C45 N44 X5K doub 385 n y 
C45 N46 X5K sing 386 n y 
N44 C43 X5K sing 387 n y 
N46 C41 X5K doub 388 n y 
C59 N55 X5K sing 389 n n 
C43 N55 X5K sing 390 n n 
C43 N42 X5K doub 391 n y 
N55 C58 X5K sing 392 n n 
C58 C60 X5K sing 393 n n 
C41 N42 X5K sing 394 n y 
C41 N2 X5K sing 395 n n 
C4 C3 X5K sing 396 n n 
C4 C5 X5K sing 397 n n 
N2 C3 X5K sing 398 n n 
N2 C1 X5K sing 399 n n 
C65 C64 X5K sing 400 n n 
C60 C64 X5K doub 401 n y 
C60 C61 X5K sing 402 n y 
C6 C1 X5K sing 403 n n 
C6 C5 X5K sing 404 n n 
C64 N63 X5K sing 405 n y 
C11 C16 X5K doub 406 n y 
C11 C12 X5K sing 407 n y 
C23 C12 X5K sing 408 n n 
C23 N24 X5K sing 409 n n 
C5 C7 X5K sing 410 n n 
C22 C21 X5K sing 411 n n 
C38 C37 X5K sing 412 n n 
C7 C8 X5K sing 413 n n 
C16 C15 X5K sing 414 n y 
C61 C66 X5K sing 415 n n 
C61 N62 X5K doub 416 n y 
C12 C13 X5K doub 417 n y 
O35 C33 X5K doub 418 n n 
N24 C25 X5K sing 419 n n 
N63 N62 X5K sing 420 n y 
N63 C67 X5K sing 421 n n 
C8 C9 X5K sing 422 n n 
N36 C34 X5K sing 423 n n 
N36 C9 X5K sing 424 n n 
O27 C25 X5K doub 425 n n 
C21 C17 X5K doub 426 n y 
C21 N20 X5K sing 427 n y 
C15 C17 X5K sing 428 n n 
C15 C14 X5K doub 429 n y 
C25 C26 X5K sing 430 n n 
C13 C14 X5K sing 431 n y 
C37 C34 X5K sing 432 n n 
C37 C40 X5K sing 433 n n 
C37 C39 X5K sing 434 n n 
C33 C34 X5K sing 435 n n 
C33 N31 X5K sing 436 n n 
C17 S18 X5K sing 437 n y 
C9 O10 X5K doub 438 n n 
N20 C19 X5K doub 439 n y 
C26 N31 X5K sing 440 n n 
C26 C28 X5K sing 441 n n 
N31 C30 X5K sing 442 n n 
C19 S18 X5K sing 443 n y 
C28 C29 X5K sing 444 n n 
C30 C29 X5K sing 445 n n 
C29 O32 X5K sing 446 n n 
C1 H1 X5K sing 447 n n 
C1 H2 X5K sing 448 n n 
C3 H3 X5K sing 449 n n 
C3 H4 X5K sing 450 n n 
C48 H5 X5K sing 451 n n 
C48 H6 X5K sing 452 n n 
C49 H7 X5K sing 453 n n 
C49 H8 X5K sing 454 n n 
C49 H9 X5K sing 455 n n 
C50 H10 X5K sing 456 n n 
C50 H11 X5K sing 457 n n 
C56 H12 X5K sing 458 n n 
C56 H13 X5K sing 459 n n 
C57 H14 X5K sing 460 n n 
C57 H15 X5K sing 461 n n 
C58 H16 X5K sing 462 n n 
C58 H17 X5K sing 463 n n 
C59 H18 X5K sing 464 n n 
C59 H19 X5K sing 465 n n 
C59 H20 X5K sing 466 n n 
C11 H21 X5K sing 467 n n 
C13 H22 X5K sing 468 n n 
C14 H23 X5K sing 469 n n 
C16 H24 X5K sing 470 n n 
C19 H25 X5K sing 471 n n 
C22 H26 X5K sing 472 n n 
C22 H27 X5K sing 473 n n 
C22 H28 X5K sing 474 n n 
C23 H29 X5K sing 475 n n 
C23 H30 X5K sing 476 n n 
C26 H31 X5K sing 477 n n 
C28 H32 X5K sing 478 n n 
C28 H33 X5K sing 479 n n 
C29 H34 X5K sing 480 n n 
C30 H35 X5K sing 481 n n 
C30 H36 X5K sing 482 n n 
C34 H37 X5K sing 483 n n 
C38 H38 X5K sing 484 n n 
C38 H39 X5K sing 485 n n 
C38 H40 X5K sing 486 n n 
C39 H41 X5K sing 487 n n 
C39 H42 X5K sing 488 n n 
C39 H43 X5K sing 489 n n 
C4 H44 X5K sing 490 n n 
C4 H45 X5K sing 491 n n 
C40 H46 X5K sing 492 n n 
C40 H47 X5K sing 493 n n 
C40 H48 X5K sing 494 n n 
C5 H49 X5K sing 495 n n 
C54 H50 X5K sing 496 n n 
C6 H51 X5K sing 497 n n 
C6 H52 X5K sing 498 n n 
C65 H53 X5K sing 499 n n 
C65 H54 X5K sing 500 n n 
C65 H55 X5K sing 501 n n 
C66 H56 X5K sing 502 n n 
C66 H57 X5K sing 503 n n 
C66 H58 X5K sing 504 n n 
C67 H59 X5K sing 505 n n 
C67 H60 X5K sing 506 n n 
C67 H61 X5K sing 507 n n 
C7 H62 X5K sing 508 n n 
C7 H63 X5K sing 509 n n 
C8 H64 X5K sing 510 n n 
C8 H65 X5K sing 511 n n 
N24 H66 X5K sing 512 n n 
N36 H67 X5K sing 513 n n 
N52 H68 X5K sing 514 n n 
O32 H69 X5K sing 515 n n 
#
_atom_sites.entry_id                     8EWV 
_atom_sites.fract_transf_matrix[1][1]    0.009051 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006096 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003903 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
Y 5 X5K C 1 501 501 X5K LI1 . 
Z 5 X5K G 1 501 501 X5K LI1 . 
AA 5 X5K K 1 501 501 X5K LI1 . 
BA 5 X5K O 1 501 501 X5K LI1 . 
CA 5 X5K S 1 501 501 X5K LI1 . 
DA 5 X5K W 1 501 501 X5K LI1 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 X5K . . . DA 5 -69.895 15.052 -115.204 1 102.71 ? C1 X5K 501 W 1 
HETATM 2 C C3 X5K . . . DA 5 -69.118 13.379 -113.565 1 102.61 ? C3 X5K 501 W 1 
HETATM 3 C C41 X5K . . . DA 5 -68.744 15.776 -113.132 1 108.53 ? C41 X5K 501 W 1 
HETATM 4 C C43 X5K . . . DA 5 -67.819 17.812 -112.872 1 97.91 ? C43 X5K 501 W 1 
HETATM 5 C C45 X5K . . . DA 5 -68.12 16.478 -111.09 1 104.79 ? C45 X5K 501 W 1 
HETATM 6 C C48 X5K . . . DA 5 -66.692 15.879 -109.193 1 83.6 ? C48 X5K 501 W 1 
HETATM 7 C C49 X5K . . . DA 5 -69.185 15.86 -108.975 1 108.25 ? C49 X5K 501 W 1 
HETATM 8 C C50 X5K . . . DA 5 -66.193 17.047 -108.358 1 77.34 ? C50 X5K 501 W 1 
HETATM 9 C C51 X5K . . . DA 5 -64.781 17.449 -108.708 1 78.46 ? C51 X5K 501 W 1 
HETATM 10 C C56 X5K . . . DA 5 -63.083 18.639 -111.756 1 81.4 ? C56 X5K 501 W 1 
HETATM 11 C C57 X5K . . . DA 5 -63.306 19.932 -111.057 1 75.42 ? C57 X5K 501 W 1 
HETATM 12 C C58 X5K . . . DA 5 -68.246 20.175 -112.98 1 93.83 ? C58 X5K 501 W 1 
HETATM 13 C C59 X5K . . . DA 5 -66.058 19.372 -113.514 1 95.33 ? C59 X5K 501 W 1 
HETATM 14 C C60 X5K . . . DA 5 -69.104 20.76 -114.069 1 87.62 ? C60 X5K 501 W 1 
HETATM 15 C C11 X5K . . . DA 5 -67.08 -0.272 -119.403 1 93.21 ? C11 X5K 501 W 1 
HETATM 16 C C12 X5K . . . DA 5 -68.018 0.749 -119.376 1 84.6 ? C12 X5K 501 W 1 
HETATM 17 C C13 X5K . . . DA 5 -69.216 0.553 -120.046 1 72.67 ? C13 X5K 501 W 1 
HETATM 18 C C14 X5K . . . DA 5 -69.482 -0.636 -120.701 1 74.39 ? C14 X5K 501 W 1 
HETATM 19 C C15 X5K . . . DA 5 -68.553 -1.67 -120.703 1 73.64 ? C15 X5K 501 W 1 
HETATM 20 C C16 X5K . . . DA 5 -67.338 -1.464 -120.055 1 90.92 ? C16 X5K 501 W 1 
HETATM 21 C C17 X5K . . . DA 5 -68.868 -2.969 -121.338 1 67.69 ? C17 X5K 501 W 1 
HETATM 22 C C19 X5K . . . DA 5 -69.626 -4.702 -122.839 1 87.28 ? C19 X5K 501 W 1 
HETATM 23 C C21 X5K . . . DA 5 -68.742 -4.258 -120.873 1 75.17 ? C21 X5K 501 W 1 
HETATM 24 C C22 X5K . . . DA 5 -68.194 -4.688 -119.552 1 82.1 ? C22 X5K 501 W 1 
HETATM 25 C C23 X5K . . . DA 5 -67.779 2.007 -118.578 1 99.22 ? C23 X5K 501 W 1 
HETATM 26 C C25 X5K . . . DA 5 -68.353 4.133 -119.627 1 74.02 ? C25 X5K 501 W 1 
HETATM 27 C C26 X5K . . . DA 5 -69.429 5.182 -119.891 1 79.87 ? C26 X5K 501 W 1 
HETATM 28 C C28 X5K . . . DA 5 -70.181 4.827 -121.187 1 76.77 ? C28 X5K 501 W 1 
HETATM 29 C C29 X5K . . . DA 5 -70.375 6.164 -121.889 1 89.94 ? C29 X5K 501 W 1 
HETATM 30 C C30 X5K . . . DA 5 -69.093 6.911 -121.56 1 91.98 ? C30 X5K 501 W 1 
HETATM 31 C C33 X5K . . . DA 5 -68.316 7.252 -119.205 1 77.5 ? C33 X5K 501 W 1 
HETATM 32 C C34 X5K . . . DA 5 -67.681 8.6 -119.574 1 69.43 ? C34 X5K 501 W 1 
HETATM 33 C C37 X5K . . . DA 5 -66.131 8.603 -119.443 1 66.27 ? C37 X5K 501 W 1 
HETATM 34 C C38 X5K . . . DA 5 -65.724 8.55 -117.969 1 91.2 ? C38 X5K 501 W 1 
HETATM 35 C C39 X5K . . . DA 5 -65.536 7.393 -120.165 1 57 ? C39 X5K 501 W 1 
HETATM 36 C C4 X5K . . . DA 5 -68.492 12.563 -114.688 1 103.32 ? C4 X5K 501 W 1 
HETATM 37 C C40 X5K . . . DA 5 -65.573 9.882 -120.065 1 79.05 ? C40 X5K 501 W 1 
HETATM 38 C C5 X5K . . . DA 5 -69.279 12.791 -115.969 1 108.14 ? C5 X5K 501 W 1 
HETATM 39 C C54 X5K . . . DA 5 -63.35 18.661 -110.3 1 83.02 ? C54 X5K 501 W 1 
HETATM 40 C C6 X5K . . . DA 5 -69.24 14.265 -116.334 1 109.65 ? C6 X5K 501 W 1 
HETATM 41 C C61 X5K . . . DA 5 -68.9 21.937 -114.825 1 77.47 ? C61 X5K 501 W 1 
HETATM 42 C C64 X5K . . . DA 5 -70.316 20.268 -114.553 1 85.02 ? C64 X5K 501 W 1 
HETATM 43 C C65 X5K . . . DA 5 -71.038 19.022 -114.169 1 82.23 ? C65 X5K 501 W 1 
HETATM 44 C C66 X5K . . . DA 5 -67.764 22.903 -114.751 1 75.99 ? C66 X5K 501 W 1 
HETATM 45 C C67 X5K . . . DA 5 -71.976 21.057 -116.267 1 84.87 ? C67 X5K 501 W 1 
HETATM 46 C C7 X5K . . . DA 5 -68.863 11.848 -117.103 1 98.73 ? C7 X5K 501 W 1 
HETATM 47 C C8 X5K . . . DA 5 -69.775 11.458 -118.265 1 84.72 ? C8 X5K 501 W 1 
HETATM 48 C C9 X5K . . . DA 5 -69.078 10.576 -119.265 1 84.73 ? C9 X5K 501 W 1 
HETATM 49 N N2 X5K . . . DA 5 -69.214 14.795 -113.932 1 106.58 ? N2 X5K 501 W 1 
HETATM 50 N N20 X5K . . . DA 5 -69.18 -5.236 -121.745 1 83.94 ? N20 X5K 501 W 1 
HETATM 51 N N24 X5K . . . DA 5 -68.712 3.078 -118.898 1 79.91 ? N24 X5K 501 W 1 
HETATM 52 N N31 X5K . . . DA 5 -68.844 6.495 -120.181 1 85.36 ? N31 X5K 501 W 1 
HETATM 53 N N36 X5K . . . DA 5 -68.296 9.624 -118.748 1 69.56 ? N36 X5K 501 W 1 
HETATM 54 N N42 X5K . . . DA 5 -68.342 16.915 -113.726 1 102.05 ? N42 X5K 501 W 1 
HETATM 55 N N44 X5K . . . DA 5 -67.672 17.655 -111.547 1 99.69 ? N44 X5K 501 W 1 
HETATM 56 N N46 X5K . . . DA 5 -68.67 15.501 -111.822 1 109.61 ? N46 X5K 501 W 1 
HETATM 57 N N47 X5K . . . DA 5 -68.007 16.118 -109.794 1 108.09 ? N47 X5K 501 W 1 
HETATM 58 N N52 X5K . . . DA 5 -64.643 18.179 -109.818 1 79.54 ? N52 X5K 501 W 1 
HETATM 59 N N55 X5K . . . DA 5 -67.463 19.015 -113.375 1 94.08 ? N55 X5K 501 W 1 
HETATM 60 N N62 X5K . . . DA 5 -69.887 22.15 -115.677 1 87.45 ? N62 X5K 501 W 1 
HETATM 61 N N63 X5K . . . DA 5 -70.745 21.116 -115.49 1 86.19 ? N63 X5K 501 W 1 
HETATM 62 O O10 X5K . . . DA 5 -69.252 10.708 -120.472 1 100.29 ? O10 X5K 501 W 1 
HETATM 63 O O27 X5K . . . DA 5 -67.225 4.269 -120.089 1 66.96 ? O27 X5K 501 W 1 
HETATM 64 O O32 X5K . . . DA 5 -71.502 6.841 -121.325 1 89.86 ? O32 X5K 501 W 1 
HETATM 65 O O35 X5K . . . DA 5 -68.357 6.907 -118.039 1 87.65 ? O35 X5K 501 W 1 
HETATM 66 O O53 X5K . . . DA 5 -63.826 17.118 -108.011 1 81.69 ? O53 X5K 501 W 1 
HETATM 67 S S18 X5K . . . DA 5 -69.561 -2.986 -122.925 1 71.58 ? S18 X5K 501 W 1 
#
_model_server_stats.io_time_ms              72 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           67 
#