data_8EWV
#
_model_server_result.job_id            MS2qHKwnBxTbc6yoVnEQRA 
_model_server_result.datetime_utc      '2024-10-19 03:47:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ewv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Y","auth_seq_id":501}' 
#
_entry.id    8EWV 
#
_exptl.entry_id    8EWV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              940.211 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-{3-[1-(4-{[3-(cyclopropylamino)-3-oxopropyl](methyl)amino}-6-{methyl[(1,3,5-trimethyl-1H-pyrazol-4-yl)methyl]amino}-1,3,5-triazin-2-yl)piperidin-4-yl]propanoyl}-3-methyl-L-valyl-(4R)-4-hydroxy-N-{[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methyl}-L-prolinamide 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8EWV 
_cell.length_a            110.485 
_cell.length_b            164.048 
_cell.length_c            256.202 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8EWV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? tetrameric 4 author_defined_assembly 1 
? tetrameric 4 author_defined_assembly 2 
? tetrameric 4 author_defined_assembly 3 
? tetrameric 4 author_defined_assembly 4 
? tetrameric 4 author_defined_assembly 5 
? tetrameric 4 author_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,Y 1 1 
E,F,G,H,Z 2 1 
I,J,K,L,AA 3 1 
M,N,O,P,BA 4 1 
Q,R,S,T,CA 5 1 
U,V,W,X,DA 6 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 Y N N 
? 5 Z N N 
? 5 AA N N 
? 5 BA N N 
? 5 CA N N 
? 5 DA N N 
#
_chem_comp.formula           'C48 H69 N13 O5 S' 
_chem_comp.formula_weight    940.211 
_chem_comp.id                X5K 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-{3-[1-(4-{[3-(cyclopropylamino)-3-oxopropyl](methyl)amino}-6-{methyl[(1,3,5-trimethyl-1H-pyrazol-4-yl)methyl]amino}-1,3,5-triazin-2-yl)piperidin-4-yl]propanoyl}-3-methyl-L-valyl-(4R)-4-hydroxy-N-{[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methyl}-L-prolinamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O53 C51 X5K doub 374 n n 
C51 C50 X5K sing 375 n n 
C51 N52 X5K sing 376 n n 
C50 C48 X5K sing 377 n n 
C54 N52 X5K sing 378 n n 
C54 C57 X5K sing 379 n n 
C54 C56 X5K sing 380 n n 
C48 N47 X5K sing 381 n n 
C57 C56 X5K sing 382 n n 
C49 N47 X5K sing 383 n n 
N47 C45 X5K sing 384 n n 
C45 N44 X5K doub 385 n y 
C45 N46 X5K sing 386 n y 
N44 C43 X5K sing 387 n y 
N46 C41 X5K doub 388 n y 
C59 N55 X5K sing 389 n n 
C43 N55 X5K sing 390 n n 
C43 N42 X5K doub 391 n y 
N55 C58 X5K sing 392 n n 
C58 C60 X5K sing 393 n n 
C41 N42 X5K sing 394 n y 
C41 N2 X5K sing 395 n n 
C4 C3 X5K sing 396 n n 
C4 C5 X5K sing 397 n n 
N2 C3 X5K sing 398 n n 
N2 C1 X5K sing 399 n n 
C65 C64 X5K sing 400 n n 
C60 C64 X5K doub 401 n y 
C60 C61 X5K sing 402 n y 
C6 C1 X5K sing 403 n n 
C6 C5 X5K sing 404 n n 
C64 N63 X5K sing 405 n y 
C11 C16 X5K doub 406 n y 
C11 C12 X5K sing 407 n y 
C23 C12 X5K sing 408 n n 
C23 N24 X5K sing 409 n n 
C5 C7 X5K sing 410 n n 
C22 C21 X5K sing 411 n n 
C38 C37 X5K sing 412 n n 
C7 C8 X5K sing 413 n n 
C16 C15 X5K sing 414 n y 
C61 C66 X5K sing 415 n n 
C61 N62 X5K doub 416 n y 
C12 C13 X5K doub 417 n y 
O35 C33 X5K doub 418 n n 
N24 C25 X5K sing 419 n n 
N63 N62 X5K sing 420 n y 
N63 C67 X5K sing 421 n n 
C8 C9 X5K sing 422 n n 
N36 C34 X5K sing 423 n n 
N36 C9 X5K sing 424 n n 
O27 C25 X5K doub 425 n n 
C21 C17 X5K doub 426 n y 
C21 N20 X5K sing 427 n y 
C15 C17 X5K sing 428 n n 
C15 C14 X5K doub 429 n y 
C25 C26 X5K sing 430 n n 
C13 C14 X5K sing 431 n y 
C37 C34 X5K sing 432 n n 
C37 C40 X5K sing 433 n n 
C37 C39 X5K sing 434 n n 
C33 C34 X5K sing 435 n n 
C33 N31 X5K sing 436 n n 
C17 S18 X5K sing 437 n y 
C9 O10 X5K doub 438 n n 
N20 C19 X5K doub 439 n y 
C26 N31 X5K sing 440 n n 
C26 C28 X5K sing 441 n n 
N31 C30 X5K sing 442 n n 
C19 S18 X5K sing 443 n y 
C28 C29 X5K sing 444 n n 
C30 C29 X5K sing 445 n n 
C29 O32 X5K sing 446 n n 
C1 H1 X5K sing 447 n n 
C1 H2 X5K sing 448 n n 
C3 H3 X5K sing 449 n n 
C3 H4 X5K sing 450 n n 
C48 H5 X5K sing 451 n n 
C48 H6 X5K sing 452 n n 
C49 H7 X5K sing 453 n n 
C49 H8 X5K sing 454 n n 
C49 H9 X5K sing 455 n n 
C50 H10 X5K sing 456 n n 
C50 H11 X5K sing 457 n n 
C56 H12 X5K sing 458 n n 
C56 H13 X5K sing 459 n n 
C57 H14 X5K sing 460 n n 
C57 H15 X5K sing 461 n n 
C58 H16 X5K sing 462 n n 
C58 H17 X5K sing 463 n n 
C59 H18 X5K sing 464 n n 
C59 H19 X5K sing 465 n n 
C59 H20 X5K sing 466 n n 
C11 H21 X5K sing 467 n n 
C13 H22 X5K sing 468 n n 
C14 H23 X5K sing 469 n n 
C16 H24 X5K sing 470 n n 
C19 H25 X5K sing 471 n n 
C22 H26 X5K sing 472 n n 
C22 H27 X5K sing 473 n n 
C22 H28 X5K sing 474 n n 
C23 H29 X5K sing 475 n n 
C23 H30 X5K sing 476 n n 
C26 H31 X5K sing 477 n n 
C28 H32 X5K sing 478 n n 
C28 H33 X5K sing 479 n n 
C29 H34 X5K sing 480 n n 
C30 H35 X5K sing 481 n n 
C30 H36 X5K sing 482 n n 
C34 H37 X5K sing 483 n n 
C38 H38 X5K sing 484 n n 
C38 H39 X5K sing 485 n n 
C38 H40 X5K sing 486 n n 
C39 H41 X5K sing 487 n n 
C39 H42 X5K sing 488 n n 
C39 H43 X5K sing 489 n n 
C4 H44 X5K sing 490 n n 
C4 H45 X5K sing 491 n n 
C40 H46 X5K sing 492 n n 
C40 H47 X5K sing 493 n n 
C40 H48 X5K sing 494 n n 
C5 H49 X5K sing 495 n n 
C54 H50 X5K sing 496 n n 
C6 H51 X5K sing 497 n n 
C6 H52 X5K sing 498 n n 
C65 H53 X5K sing 499 n n 
C65 H54 X5K sing 500 n n 
C65 H55 X5K sing 501 n n 
C66 H56 X5K sing 502 n n 
C66 H57 X5K sing 503 n n 
C66 H58 X5K sing 504 n n 
C67 H59 X5K sing 505 n n 
C67 H60 X5K sing 506 n n 
C67 H61 X5K sing 507 n n 
C7 H62 X5K sing 508 n n 
C7 H63 X5K sing 509 n n 
C8 H64 X5K sing 510 n n 
C8 H65 X5K sing 511 n n 
N24 H66 X5K sing 512 n n 
N36 H67 X5K sing 513 n n 
N52 H68 X5K sing 514 n n 
O32 H69 X5K sing 515 n n 
#
_atom_sites.entry_id                     8EWV 
_atom_sites.fract_transf_matrix[1][1]    0.009051 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006096 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003903 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
Y 5 X5K C 1 501 501 X5K LI1 . 
Z 5 X5K G 1 501 501 X5K LI1 . 
AA 5 X5K K 1 501 501 X5K LI1 . 
BA 5 X5K O 1 501 501 X5K LI1 . 
CA 5 X5K S 1 501 501 X5K LI1 . 
DA 5 X5K W 1 501 501 X5K LI1 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 X5K . . . Y 5 -43.727 -16.281 -78.16 1 70.88 ? C1 X5K 501 C 1 
HETATM 2 C C3 X5K . . . Y 5 -45.615 -14.864 -78.88 1 73.88 ? C3 X5K 501 C 1 
HETATM 3 C C41 X5K . . . Y 5 -45.13 -16.984 -80.041 1 57.92 ? C41 X5K 501 C 1 
HETATM 4 C C43 X5K . . . Y 5 -45.313 -19.088 -80.819 1 72.28 ? C43 X5K 501 C 1 
HETATM 5 C C45 X5K . . . Y 5 -45.838 -17.347 -82.135 1 70.95 ? C45 X5K 501 C 1 
HETATM 6 C C48 X5K . . . Y 5 -45.281 -16.832 -84.454 1 57.23 ? C48 X5K 501 C 1 
HETATM 7 C C49 X5K . . . Y 5 -47.479 -16.146 -83.489 1 69.09 ? C49 X5K 501 C 1 
HETATM 8 C C50 X5K . . . Y 5 -45.458 -18.095 -85.277 1 50.74 ? C50 X5K 501 C 1 
HETATM 9 C C51 X5K . . . Y 5 -44.118 -18.714 -85.586 1 58.05 ? C51 X5K 501 C 1 
HETATM 10 C C56 X5K . . . Y 5 -41.444 -20.236 -83.439 1 80.71 ? C56 X5K 501 C 1 
HETATM 11 C C57 X5K . . . Y 5 -42.049 -21.346 -84.214 1 81.36 ? C57 X5K 501 C 1 
HETATM 12 C C58 X5K . . . Y 5 -46.354 -21.196 -80.185 1 84.5 ? C58 X5K 501 C 1 
HETATM 13 C C59 X5K . . . Y 5 -44.029 -21.168 -80.99 1 83.99 ? C59 X5K 501 C 1 
HETATM 14 C C60 X5K . . . Y 5 -46.744 -21.03 -78.74 1 82.55 ? C60 X5K 501 C 1 
HETATM 15 C C11 X5K . . . Y 5 -36.651 -2.136 -78.194 1 45.61 ? C11 X5K 501 C 1 
HETATM 16 C C12 X5K . . . Y 5 -37.723 -2.743 -77.559 1 33.75 ? C12 X5K 501 C 1 
HETATM 17 C C13 X5K . . . Y 5 -38.142 -2.228 -76.346 1 48.44 ? C13 X5K 501 C 1 
HETATM 18 C C14 X5K . . . Y 5 -37.526 -1.124 -75.788 1 53.52 ? C14 X5K 501 C 1 
HETATM 19 C C15 X5K . . . Y 5 -36.474 -0.495 -76.435 1 40.57 ? C15 X5K 501 C 1 
HETATM 20 C C16 X5K . . . Y 5 -36.032 -1.027 -77.644 1 46.62 ? C16 X5K 501 C 1 
HETATM 21 C C17 X5K . . . Y 5 -35.882 0.739 -75.878 1 38.83 ? C17 X5K 501 C 1 
HETATM 22 C C19 X5K . . . Y 5 -34.999 2.428 -74.401 1 57.34 ? C19 X5K 501 C 1 
HETATM 23 C C21 X5K . . . Y 5 -35.615 1.957 -76.458 1 42.53 ? C21 X5K 501 C 1 
HETATM 24 C C22 X5K . . . Y 5 -35.819 2.337 -77.888 1 59.32 ? C22 X5K 501 C 1 
HETATM 25 C C23 X5K . . . Y 5 -38.411 -3.959 -78.126 1 45.98 ? C23 X5K 501 C 1 
HETATM 26 C C25 X5K . . . Y 5 -39.051 -5.591 -76.427 1 43.65 ? C25 X5K 501 C 1 
HETATM 27 C C26 X5K . . . Y 5 -40.136 -6.079 -75.472 1 56.19 ? C26 X5K 501 C 1 
HETATM 28 C C28 X5K . . . Y 5 -40.01 -5.424 -74.084 1 68.02 ? C28 X5K 501 C 1 
HETATM 29 C C29 X5K . . . Y 5 -40.329 -6.548 -73.106 1 74.39 ? C29 X5K 501 C 1 
HETATM 30 C C30 X5K . . . Y 5 -39.723 -7.77 -73.779 1 56.18 ? C30 X5K 501 C 1 
HETATM 31 C C33 X5K . . . Y 5 -40.078 -8.385 -76.209 1 57.36 ? C33 X5K 501 C 1 
HETATM 32 C C34 X5K . . . Y 5 -39.915 -9.88 -75.913 1 48.47 ? C34 X5K 501 C 1 
HETATM 33 C C37 X5K . . . Y 5 -38.528 -10.458 -76.315 1 51.68 ? C37 X5K 501 C 1 
HETATM 34 C C38 X5K . . . Y 5 -38.373 -10.472 -77.837 1 60.71 ? C38 X5K 501 C 1 
HETATM 35 C C39 X5K . . . Y 5 -37.396 -9.628 -75.706 1 47.32 ? C39 X5K 501 C 1 
HETATM 36 C C4 X5K . . . Y 5 -44.69 -13.66 -79.045 1 66.96 ? C4 X5K 501 C 1 
HETATM 37 C C40 X5K . . . Y 5 -38.433 -11.89 -75.795 1 51.31 ? C40 X5K 501 C 1 
HETATM 38 C C5 X5K . . . Y 5 -43.543 -13.843 -78.063 1 87.02 ? C5 X5K 501 C 1 
HETATM 39 C C54 X5K . . . Y 5 -42.199 -19.951 -84.678 1 62.4 ? C54 X5K 501 C 1 
HETATM 40 C C6 X5K . . . Y 5 -42.781 -15.117 -78.371 1 68.45 ? C6 X5K 501 C 1 
HETATM 41 C C61 X5K . . . Y 5 -46.482 -21.849 -77.617 1 70.12 ? C61 X5K 501 C 1 
HETATM 42 C C64 X5K . . . Y 5 -47.531 -20.006 -78.209 1 89.35 ? C64 X5K 501 C 1 
HETATM 43 C C65 X5K . . . Y 5 -48.149 -18.847 -78.914 1 91.7 ? C65 X5K 501 C 1 
HETATM 44 C C66 X5K . . . Y 5 -45.675 -23.102 -77.553 1 81.66 ? C66 X5K 501 C 1 
HETATM 45 C C67 X5K . . . Y 5 -48.425 -19.463 -75.926 1 100.6 ? C67 X5K 501 C 1 
HETATM 46 C C7 X5K . . . Y 5 -42.671 -12.636 -77.73 1 85.2 ? C7 X5K 501 C 1 
HETATM 47 C C8 X5K . . . Y 5 -43.146 -11.724 -76.609 1 58.01 ? C8 X5K 501 C 1 
HETATM 48 C C9 X5K . . . Y 5 -42.012 -11.097 -75.837 1 48.05 ? C9 X5K 501 C 1 
HETATM 49 N N2 X5K . . . Y 5 -44.899 -16.137 -79.022 1 67.45 ? N2 X5K 501 C 1 
HETATM 50 N N20 X5K . . . Y 5 -35.111 2.913 -75.598 1 48.22 ? N20 X5K 501 C 1 
HETATM 51 N N24 X5K . . . Y 5 -39.343 -4.519 -77.158 1 44.44 ? N24 X5K 501 C 1 
HETATM 52 N N31 X5K . . . Y 5 -39.985 -7.509 -75.194 1 52.89 ? N31 X5K 501 C 1 
HETATM 53 N N36 X5K . . . Y 5 -41.01 -10.586 -76.557 1 40.46 ? N36 X5K 501 C 1 
HETATM 54 N N42 X5K . . . Y 5 -44.975 -18.295 -79.79 1 62.67 ? N42 X5K 501 C 1 
HETATM 55 N N44 X5K . . . Y 5 -45.746 -18.681 -82.02 1 76.8 ? N44 X5K 501 C 1 
HETATM 56 N N46 X5K . . . Y 5 -45.556 -16.444 -81.188 1 57.58 ? N46 X5K 501 C 1 
HETATM 57 N N47 X5K . . . Y 5 -46.177 -16.772 -83.305 1 69.26 ? N47 X5K 501 C 1 
HETATM 58 N N52 X5K . . . Y 5 -43.509 -19.315 -84.562 1 44.21 ? N52 X5K 501 C 1 
HETATM 59 N N55 X5K . . . Y 5 -45.189 -20.404 -80.547 1 79.35 ? N55 X5K 501 C 1 
HETATM 60 N N62 X5K . . . Y 5 -47.049 -21.377 -76.519 1 78.35 ? N62 X5K 501 C 1 
HETATM 61 N N63 X5K . . . Y 5 -47.686 -20.246 -76.908 1 91.16 ? N63 X5K 501 C 1 
HETATM 62 O O10 X5K . . . Y 5 -42.01 -11.085 -74.611 1 62.19 ? O10 X5K 501 C 1 
HETATM 63 O O27 X5K . . . Y 5 -37.972 -6.171 -76.49 1 40.44 ? O27 X5K 501 C 1 
HETATM 64 O O32 X5K . . . Y 5 -41.746 -6.695 -72.963 1 76.48 ? O32 X5K 501 C 1 
HETATM 65 O O35 X5K . . . Y 5 -40.324 -8.021 -77.344 1 62.99 ? O35 X5K 501 C 1 
HETATM 66 O O53 X5K . . . Y 5 -43.623 -18.653 -86.708 1 71.63 ? O53 X5K 501 C 1 
HETATM 67 S S18 X5K . . . Y 5 -35.485 0.791 -74.199 1 45.8 ? S18 X5K 501 C 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    45 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           67 
#