data_8EX2
#
_model_server_result.job_id            1zqtjK7S1Hv72f0SYe5RIA 
_model_server_result.datetime_utc      '2024-11-24 09:07:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ex2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":903}' 
#
_entry.id    8EX2 
#
_exptl.entry_id    8EX2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.55 
_cell.angle_gamma         90 
_cell.entry_id            8EX2 
_cell.length_a            92.169 
_cell.length_b            57.423 
_cell.length_c            60.523 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8EX2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8EX2 
_atom_sites.fract_transf_matrix[1][1]    0.01085 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000863 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017415 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016575 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 Q2Q A 1 901 1 Q2Q HTS . 
C 3 GOL A 1 902 300 GOL GOL . 
D 3 GOL A 1 903 301 GOL GOL . 
E 3 GOL A 1 904 302 GOL GOL . 
F 4 HOH A 1 1001 103 HOH HOH . 
F 4 HOH A 2 1002 158 HOH HOH . 
F 4 HOH A 3 1003 212 HOH HOH . 
F 4 HOH A 4 1004 213 HOH HOH . 
F 4 HOH A 5 1005 105 HOH HOH . 
F 4 HOH A 6 1006 223 HOH HOH . 
F 4 HOH A 7 1007 55 HOH HOH . 
F 4 HOH A 8 1008 162 HOH HOH . 
F 4 HOH A 9 1009 10 HOH HOH . 
F 4 HOH A 10 1010 49 HOH HOH . 
F 4 HOH A 11 1011 168 HOH HOH . 
F 4 HOH A 12 1012 83 HOH HOH . 
F 4 HOH A 13 1013 187 HOH HOH . 
F 4 HOH A 14 1014 138 HOH HOH . 
F 4 HOH A 15 1015 47 HOH HOH . 
F 4 HOH A 16 1016 16 HOH HOH . 
F 4 HOH A 17 1017 185 HOH HOH . 
F 4 HOH A 18 1018 39 HOH HOH . 
F 4 HOH A 19 1019 32 HOH HOH . 
F 4 HOH A 20 1020 6 HOH HOH . 
F 4 HOH A 21 1021 45 HOH HOH . 
F 4 HOH A 22 1022 30 HOH HOH . 
F 4 HOH A 23 1023 100 HOH HOH . 
F 4 HOH A 24 1024 53 HOH HOH . 
F 4 HOH A 25 1025 81 HOH HOH . 
F 4 HOH A 26 1026 107 HOH HOH . 
F 4 HOH A 27 1027 22 HOH HOH . 
F 4 HOH A 28 1028 15 HOH HOH . 
F 4 HOH A 29 1029 126 HOH HOH . 
F 4 HOH A 30 1030 75 HOH HOH . 
F 4 HOH A 31 1031 76 HOH HOH . 
F 4 HOH A 32 1032 27 HOH HOH . 
F 4 HOH A 33 1033 58 HOH HOH . 
F 4 HOH A 34 1034 57 HOH HOH . 
F 4 HOH A 35 1035 134 HOH HOH . 
F 4 HOH A 36 1036 67 HOH HOH . 
F 4 HOH A 37 1037 26 HOH HOH . 
F 4 HOH A 38 1038 48 HOH HOH . 
F 4 HOH A 39 1039 78 HOH HOH . 
F 4 HOH A 40 1040 18 HOH HOH . 
F 4 HOH A 41 1041 7 HOH HOH . 
F 4 HOH A 42 1042 9 HOH HOH . 
F 4 HOH A 43 1043 80 HOH HOH . 
F 4 HOH A 44 1044 109 HOH HOH . 
F 4 HOH A 45 1045 4 HOH HOH . 
F 4 HOH A 46 1046 59 HOH HOH . 
F 4 HOH A 47 1047 209 HOH HOH . 
F 4 HOH A 48 1048 17 HOH HOH . 
F 4 HOH A 49 1049 157 HOH HOH . 
F 4 HOH A 50 1050 152 HOH HOH . 
F 4 HOH A 51 1051 125 HOH HOH . 
F 4 HOH A 52 1052 98 HOH HOH . 
F 4 HOH A 53 1053 82 HOH HOH . 
F 4 HOH A 54 1054 91 HOH HOH . 
F 4 HOH A 55 1055 25 HOH HOH . 
F 4 HOH A 56 1056 122 HOH HOH . 
F 4 HOH A 57 1057 129 HOH HOH . 
F 4 HOH A 58 1058 65 HOH HOH . 
F 4 HOH A 59 1059 23 HOH HOH . 
F 4 HOH A 60 1060 163 HOH HOH . 
F 4 HOH A 61 1061 3 HOH HOH . 
F 4 HOH A 62 1062 38 HOH HOH . 
F 4 HOH A 63 1063 51 HOH HOH . 
F 4 HOH A 64 1064 124 HOH HOH . 
F 4 HOH A 65 1065 8 HOH HOH . 
F 4 HOH A 66 1066 28 HOH HOH . 
F 4 HOH A 67 1067 85 HOH HOH . 
F 4 HOH A 68 1068 130 HOH HOH . 
F 4 HOH A 69 1069 167 HOH HOH . 
F 4 HOH A 70 1070 19 HOH HOH . 
F 4 HOH A 71 1071 66 HOH HOH . 
F 4 HOH A 72 1072 118 HOH HOH . 
F 4 HOH A 73 1073 62 HOH HOH . 
F 4 HOH A 74 1074 149 HOH HOH . 
F 4 HOH A 75 1075 77 HOH HOH . 
F 4 HOH A 76 1076 166 HOH HOH . 
F 4 HOH A 77 1077 21 HOH HOH . 
F 4 HOH A 78 1078 153 HOH HOH . 
F 4 HOH A 79 1079 144 HOH HOH . 
F 4 HOH A 80 1080 135 HOH HOH . 
F 4 HOH A 81 1081 102 HOH HOH . 
F 4 HOH A 82 1082 119 HOH HOH . 
F 4 HOH A 83 1083 112 HOH HOH . 
F 4 HOH A 84 1084 90 HOH HOH . 
F 4 HOH A 85 1085 70 HOH HOH . 
F 4 HOH A 86 1086 154 HOH HOH . 
F 4 HOH A 87 1087 96 HOH HOH . 
F 4 HOH A 88 1088 46 HOH HOH . 
F 4 HOH A 89 1089 60 HOH HOH . 
F 4 HOH A 90 1090 92 HOH HOH . 
F 4 HOH A 91 1091 1 HOH HOH . 
F 4 HOH A 92 1092 155 HOH HOH . 
F 4 HOH A 93 1093 61 HOH HOH . 
F 4 HOH A 94 1094 132 HOH HOH . 
F 4 HOH A 95 1095 176 HOH HOH . 
F 4 HOH A 96 1096 64 HOH HOH . 
F 4 HOH A 97 1097 174 HOH HOH . 
F 4 HOH A 98 1098 137 HOH HOH . 
F 4 HOH A 99 1099 63 HOH HOH . 
F 4 HOH A 100 1100 115 HOH HOH . 
F 4 HOH A 101 1101 88 HOH HOH . 
F 4 HOH A 102 1102 170 HOH HOH . 
F 4 HOH A 103 1103 117 HOH HOH . 
F 4 HOH A 104 1104 11 HOH HOH . 
F 4 HOH A 105 1105 24 HOH HOH . 
F 4 HOH A 106 1106 110 HOH HOH . 
F 4 HOH A 107 1107 2 HOH HOH . 
F 4 HOH A 108 1108 141 HOH HOH . 
F 4 HOH A 109 1109 13 HOH HOH . 
F 4 HOH A 110 1110 230 HOH HOH . 
F 4 HOH A 111 1111 5 HOH HOH . 
F 4 HOH A 112 1112 94 HOH HOH . 
F 4 HOH A 113 1113 73 HOH HOH . 
F 4 HOH A 114 1114 147 HOH HOH . 
F 4 HOH A 115 1115 136 HOH HOH . 
F 4 HOH A 116 1116 143 HOH HOH . 
F 4 HOH A 117 1117 37 HOH HOH . 
F 4 HOH A 118 1118 97 HOH HOH . 
F 4 HOH A 119 1119 116 HOH HOH . 
F 4 HOH A 120 1120 142 HOH HOH . 
F 4 HOH A 121 1121 56 HOH HOH . 
F 4 HOH A 122 1122 106 HOH HOH . 
F 4 HOH A 123 1123 179 HOH HOH . 
F 4 HOH A 124 1124 226 HOH HOH . 
F 4 HOH A 125 1125 12 HOH HOH . 
F 4 HOH A 126 1126 69 HOH HOH . 
F 4 HOH A 127 1127 99 HOH HOH . 
F 4 HOH A 128 1128 206 HOH HOH . 
F 4 HOH A 129 1129 201 HOH HOH . 
F 4 HOH A 130 1130 41 HOH HOH . 
F 4 HOH A 131 1131 14 HOH HOH . 
F 4 HOH A 132 1132 161 HOH HOH . 
F 4 HOH A 133 1133 36 HOH HOH . 
F 4 HOH A 134 1134 172 HOH HOH . 
F 4 HOH A 135 1135 146 HOH HOH . 
F 4 HOH A 136 1136 148 HOH HOH . 
F 4 HOH A 137 1137 74 HOH HOH . 
F 4 HOH A 138 1138 33 HOH HOH . 
F 4 HOH A 139 1139 43 HOH HOH . 
F 4 HOH A 140 1140 40 HOH HOH . 
F 4 HOH A 141 1141 173 HOH HOH . 
F 4 HOH A 142 1142 31 HOH HOH . 
F 4 HOH A 143 1143 139 HOH HOH . 
F 4 HOH A 144 1144 29 HOH HOH . 
F 4 HOH A 145 1145 71 HOH HOH . 
F 4 HOH A 146 1146 186 HOH HOH . 
F 4 HOH A 147 1147 192 HOH HOH . 
F 4 HOH A 148 1148 204 HOH HOH . 
F 4 HOH A 149 1149 164 HOH HOH . 
F 4 HOH A 150 1150 120 HOH HOH . 
F 4 HOH A 151 1151 44 HOH HOH . 
F 4 HOH A 152 1152 184 HOH HOH . 
F 4 HOH A 153 1153 89 HOH HOH . 
F 4 HOH A 154 1154 95 HOH HOH . 
F 4 HOH A 155 1155 225 HOH HOH . 
F 4 HOH A 156 1156 87 HOH HOH . 
F 4 HOH A 157 1157 183 HOH HOH . 
F 4 HOH A 158 1158 171 HOH HOH . 
F 4 HOH A 159 1159 231 HOH HOH . 
F 4 HOH A 160 1160 35 HOH HOH . 
F 4 HOH A 161 1161 228 HOH HOH . 
F 4 HOH A 162 1162 93 HOH HOH . 
F 4 HOH A 163 1163 165 HOH HOH . 
F 4 HOH A 164 1164 218 HOH HOH . 
F 4 HOH A 165 1165 199 HOH HOH . 
F 4 HOH A 166 1166 222 HOH HOH . 
F 4 HOH A 167 1167 79 HOH HOH . 
F 4 HOH A 168 1168 42 HOH HOH . 
F 4 HOH A 169 1169 191 HOH HOH . 
F 4 HOH A 170 1170 215 HOH HOH . 
F 4 HOH A 171 1171 197 HOH HOH . 
F 4 HOH A 172 1172 198 HOH HOH . 
F 4 HOH A 173 1173 182 HOH HOH . 
F 4 HOH A 174 1174 195 HOH HOH . 
F 4 HOH A 175 1175 208 HOH HOH . 
F 4 HOH A 176 1176 151 HOH HOH . 
F 4 HOH A 177 1177 219 HOH HOH . 
F 4 HOH A 178 1178 131 HOH HOH . 
F 4 HOH A 179 1179 113 HOH HOH . 
F 4 HOH A 180 1180 101 HOH HOH . 
F 4 HOH A 181 1181 175 HOH HOH . 
F 4 HOH A 182 1182 160 HOH HOH . 
F 4 HOH A 183 1183 211 HOH HOH . 
F 4 HOH A 184 1184 150 HOH HOH . 
F 4 HOH A 185 1185 127 HOH HOH . 
F 4 HOH A 186 1186 207 HOH HOH . 
F 4 HOH A 187 1187 178 HOH HOH . 
F 4 HOH A 188 1188 232 HOH HOH . 
F 4 HOH A 189 1189 72 HOH HOH . 
F 4 HOH A 190 1190 221 HOH HOH . 
F 4 HOH A 191 1191 68 HOH HOH . 
F 4 HOH A 192 1192 194 HOH HOH . 
F 4 HOH A 193 1193 227 HOH HOH . 
F 4 HOH A 194 1194 224 HOH HOH . 
F 4 HOH A 195 1195 217 HOH HOH . 
F 4 HOH A 196 1196 196 HOH HOH . 
F 4 HOH A 197 1197 229 HOH HOH . 
F 4 HOH A 198 1198 111 HOH HOH . 
F 4 HOH A 199 1199 104 HOH HOH . 
F 4 HOH A 200 1200 121 HOH HOH . 
F 4 HOH A 201 1201 159 HOH HOH . 
F 4 HOH A 202 1202 190 HOH HOH . 
F 4 HOH A 203 1203 193 HOH HOH . 
F 4 HOH A 204 1204 180 HOH HOH . 
F 4 HOH A 205 1205 200 HOH HOH . 
F 4 HOH A 206 1206 108 HOH HOH . 
F 4 HOH A 207 1207 145 HOH HOH . 
F 4 HOH A 208 1208 123 HOH HOH . 
F 4 HOH A 209 1209 140 HOH HOH . 
F 4 HOH A 210 1210 133 HOH HOH . 
F 4 HOH A 211 1211 128 HOH HOH . 
F 4 HOH A 212 1212 50 HOH HOH . 
F 4 HOH A 213 1213 220 HOH HOH . 
F 4 HOH A 214 1214 188 HOH HOH . 
F 4 HOH A 215 1215 156 HOH HOH . 
F 4 HOH A 216 1216 34 HOH HOH . 
F 4 HOH A 217 1217 114 HOH HOH . 
F 4 HOH A 218 1218 181 HOH HOH . 
F 4 HOH A 219 1219 203 HOH HOH . 
F 4 HOH A 220 1220 54 HOH HOH . 
F 4 HOH A 221 1221 52 HOH HOH . 
F 4 HOH A 222 1222 210 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 26.683 18.339 35.02 1 41.52 ? C1 GOL 903 A 1 
HETATM 2 O O1 GOL . . . D 3 25.392 18.91 35.295 1 38.88 ? O1 GOL 903 A 1 
HETATM 3 C C2 GOL . . . D 3 27.425 19.349 34.168 1 35.61 ? C2 GOL 903 A 1 
HETATM 4 O O2 GOL . . . D 3 28.059 20.336 34.925 1 55.24 ? O2 GOL 903 A 1 
HETATM 5 C C3 GOL . . . D 3 28.437 18.565 33.26 1 40.36 ? C3 GOL 903 A 1 
HETATM 6 O O3 GOL . . . D 3 29.583 18.157 33.966 1 42.62 ? O3 GOL 903 A 1 
HETATM 7 H H11 GOL . . . D 3 26.627 17.494 34.545 1 49.83 ? H11 GOL 903 A 1 
HETATM 8 H H12 GOL . . . D 3 27.193 18.157 35.825 1 49.83 ? H12 GOL 903 A 1 
HETATM 9 H HO1 GOL . . . D 3 25.534 19.684 35.622 1 46.66 ? HO1 GOL 903 A 1 
HETATM 10 H H2 GOL . . . D 3 26.774 19.804 33.611 1 42.74 ? H2 GOL 903 A 1 
HETATM 11 H HO2 GOL . . . D 3 28.881 20.121 34.998 1 66.29 ? HO2 GOL 903 A 1 
HETATM 12 H H31 GOL . . . D 3 28.653 19.14 32.51 1 48.43 ? H31 GOL 903 A 1 
HETATM 13 H H32 GOL . . . D 3 27.955 17.814 32.877 1 48.43 ? H32 GOL 903 A 1 
HETATM 14 H HO3 GOL . . . D 3 29.709 17.336 33.788 1 51.15 ? HO3 GOL 903 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           223 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           14 
#