data_8EXH
#
_model_server_result.job_id            d7cHM3izfQ3V0NZqkgv41w 
_model_server_result.datetime_utc      '2024-11-12 19:32:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8exh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"EB","auth_seq_id":200}' 
#
_entry.id    8EXH 
#
_exptl.entry_id    8EXH 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              593.773 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(14S,17R)-20-amino-17-hydroxy-11,17-dioxo-12,16,18-trioxa-17lambda~5~-phosphaicosan-14-yl tetradecanoate' 
_entity.pdbx_number_of_molecules    40 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8EXH 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8EXH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    40-meric 
_pdbx_struct_assembly.oligomeric_count      40 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 OA N N 
? 2 PA N N 
? 2 QA N N 
? 2 RA N N 
? 2 SA N N 
? 2 TA N N 
? 2 UA N N 
? 2 VA N N 
? 2 WA N N 
? 2 XA N N 
? 2 YA N N 
? 2 ZA N N 
? 2 AB N N 
? 2 BB N N 
? 2 CB N N 
? 2 DB N N 
? 2 EB N N 
? 2 FB N N 
? 2 GB N N 
? 2 HB N N 
? 2 IB N N 
? 2 JB N N 
? 2 KB N N 
? 2 LB N N 
? 2 MB N N 
? 2 NB N N 
? 2 OB N N 
? 2 PB N N 
? 2 QB N N 
? 2 RB N N 
? 2 SB N N 
? 2 TB N N 
? 2 UB N N 
? 2 VB N N 
? 2 WB N N 
? 2 XB N N 
? 2 YB N N 
? 2 ZB N N 
? 2 AC N N 
? 2 BC N N 
#
_chem_comp.formula           'C30 H60 N O8 P' 
_chem_comp.formula_weight    593.773 
_chem_comp.id                X3D 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(14S,17R)-20-amino-17-hydroxy-11,17-dioxo-12,16,18-trioxa-17lambda~5~-phosphaicosan-14-yl tetradecanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C01 C02 X3D sing 311 n n 
C02 C03 X3D sing 312 n n 
C03 C04 X3D sing 313 n n 
C38 C37 X3D sing 314 n n 
C04 C05 X3D sing 315 n n 
C37 C36 X3D sing 316 n n 
C05 C06 X3D sing 317 n n 
C36 C35 X3D sing 318 n n 
C06 C07 X3D sing 319 n n 
C07 C08 X3D sing 320 n n 
C35 C34 X3D sing 321 n n 
C34 C33 X3D sing 322 n n 
C08 C09 X3D sing 323 n n 
C09 C10 X3D sing 324 n n 
C33 C32 X3D sing 325 n n 
C11 C10 X3D sing 326 n n 
C11 C12 X3D sing 327 n n 
C32 C31 X3D sing 328 n n 
C13 C12 X3D sing 329 n n 
C13 C14 X3D sing 330 n n 
C31 C30 X3D sing 331 n n 
N23 C22 X3D sing 332 n n 
C14 O15 X3D sing 333 n n 
C14 O40 X3D doub 334 n n 
O15 C16 X3D sing 335 n n 
C30 C29 X3D sing 336 n n 
C29 C28 X3D sing 337 n n 
C26 C16 X3D sing 338 n n 
C26 O27 X3D sing 339 n n 
C22 C21 X3D sing 340 n n 
C16 C17 X3D sing 341 n n 
C21 O20 X3D sing 342 n n 
C28 O27 X3D sing 343 n n 
C28 O39 X3D doub 344 n n 
O24 P19 X3D doub 345 n n 
P19 O20 X3D sing 346 n n 
P19 O18 X3D sing 347 n n 
P19 O25 X3D sing 348 n n 
C17 O18 X3D sing 349 n n 
C17 H1 X3D sing 350 n n 
C17 H2 X3D sing 351 n n 
C12 H3 X3D sing 352 n n 
C12 H4 X3D sing 353 n n 
C16 H5 X3D sing 354 n n 
C11 H6 X3D sing 355 n n 
C11 H7 X3D sing 356 n n 
C22 H8 X3D sing 357 n n 
C22 H9 X3D sing 358 n n 
C21 H10 X3D sing 359 n n 
C21 H11 X3D sing 360 n n 
C36 H12 X3D sing 361 n n 
C36 H13 X3D sing 362 n n 
C35 H14 X3D sing 363 n n 
C35 H15 X3D sing 364 n n 
C31 H16 X3D sing 365 n n 
C31 H17 X3D sing 366 n n 
C13 H18 X3D sing 367 n n 
C13 H19 X3D sing 368 n n 
C10 H20 X3D sing 369 n n 
C10 H21 X3D sing 370 n n 
C30 H22 X3D sing 371 n n 
C30 H23 X3D sing 372 n n 
C29 H24 X3D sing 373 n n 
C29 H25 X3D sing 374 n n 
C32 H26 X3D sing 375 n n 
C32 H27 X3D sing 376 n n 
C34 H28 X3D sing 377 n n 
C34 H29 X3D sing 378 n n 
C33 H30 X3D sing 379 n n 
C33 H31 X3D sing 380 n n 
C37 H32 X3D sing 381 n n 
C37 H33 X3D sing 382 n n 
C38 H34 X3D sing 383 n n 
C38 H35 X3D sing 384 n n 
C38 H36 X3D sing 385 n n 
C01 H37 X3D sing 386 n n 
C01 H38 X3D sing 387 n n 
C01 H39 X3D sing 388 n n 
C02 H40 X3D sing 389 n n 
C02 H41 X3D sing 390 n n 
C03 H42 X3D sing 391 n n 
C03 H43 X3D sing 392 n n 
C04 H44 X3D sing 393 n n 
C04 H45 X3D sing 394 n n 
C05 H46 X3D sing 395 n n 
C05 H47 X3D sing 396 n n 
C06 H48 X3D sing 397 n n 
C06 H49 X3D sing 398 n n 
C07 H50 X3D sing 399 n n 
C07 H51 X3D sing 400 n n 
C08 H52 X3D sing 401 n n 
C08 H53 X3D sing 402 n n 
C09 H54 X3D sing 403 n n 
C09 H55 X3D sing 404 n n 
C26 H56 X3D sing 405 n n 
C26 H57 X3D sing 406 n n 
N23 H58 X3D sing 407 n n 
N23 H59 X3D sing 408 n n 
O25 H61 X3D sing 409 n n 
#
_atom_sites.entry_id                     8EXH 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
OA 2 X3D A 1 200 200 X3D TT2 . 
PA 2 X3D B 1 200 200 X3D TT2 . 
QA 2 X3D C 1 200 200 X3D TT2 . 
RA 2 X3D D 1 200 200 X3D TT2 . 
SA 2 X3D E 1 200 200 X3D TT2 . 
TA 2 X3D F 1 200 200 X3D TT2 . 
UA 2 X3D G 1 200 200 X3D TT2 . 
VA 2 X3D H 1 200 200 X3D TT2 . 
WA 2 X3D I 1 200 200 X3D TT2 . 
XA 2 X3D J 1 200 200 X3D TT2 . 
YA 2 X3D K 1 200 200 X3D TT2 . 
ZA 2 X3D L 1 200 200 X3D TT2 . 
AB 2 X3D M 1 200 200 X3D TT2 . 
BB 2 X3D N 1 200 200 X3D TT2 . 
CB 2 X3D O 1 200 200 X3D TT2 . 
DB 2 X3D P 1 200 200 X3D TT2 . 
EB 2 X3D Q 1 200 200 X3D TT2 . 
FB 2 X3D R 1 200 200 X3D TT2 . 
GB 2 X3D S 1 200 200 X3D TT2 . 
HB 2 X3D T 1 200 200 X3D TT2 . 
IB 2 X3D U 1 200 200 X3D TT2 . 
JB 2 X3D V 1 200 200 X3D TT2 . 
KB 2 X3D W 1 200 200 X3D TT2 . 
LB 2 X3D X 1 200 200 X3D TT2 . 
MB 2 X3D Y 1 200 200 X3D TT2 . 
NB 2 X3D Z 1 200 200 X3D TT2 . 
OB 2 X3D a 1 200 200 X3D TT2 . 
PB 2 X3D b 1 200 200 X3D TT2 . 
QB 2 X3D c 1 200 200 X3D TT2 . 
RB 2 X3D d 1 200 200 X3D TT2 . 
SB 2 X3D e 1 200 200 X3D TT2 . 
TB 2 X3D f 1 200 200 X3D TT2 . 
UB 2 X3D g 1 200 200 X3D TT2 . 
VB 2 X3D h 1 200 200 X3D TT2 . 
WB 2 X3D i 1 200 200 X3D TT2 . 
XB 2 X3D j 1 200 200 X3D TT2 . 
YB 2 X3D k 1 200 200 X3D TT2 . 
ZB 2 X3D l 1 200 200 X3D TT2 . 
AC 2 X3D m 1 200 200 X3D TT2 . 
BC 2 X3D n 1 200 200 X3D TT2 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C17 X3D . . . EB 2 16.165 -4.908 42.866 1 79.99 ? C17 X3D 200 Q 1 
HETATM 2 C C12 X3D . . . EB 2 16.378 -9.108 39.621 1 79.99 ? C12 X3D 200 Q 1 
HETATM 3 C C16 X3D . . . EB 2 16.403 -6.07 41.905 1 79.99 ? C16 X3D 200 Q 1 
HETATM 4 C C11 X3D . . . EB 2 17.744 -9.219 38.953 1 79.99 ? C11 X3D 200 Q 1 
HETATM 5 C C28 X3D . . . EB 2 19.983 -5.961 42.155 1 79.99 ? C28 X3D 200 Q 1 
HETATM 6 C C22 X3D . . . EB 2 10.227 -4.207 41.603 1 79.99 ? C22 X3D 200 Q 1 
HETATM 7 C C21 X3D . . . EB 2 11.38 -3.241 41.869 1 79.99 ? C21 X3D 200 Q 1 
HETATM 8 C C36 X3D . . . EB 2 24.228 -9.678 34.748 1 79.99 ? C36 X3D 200 Q 1 
HETATM 9 C C35 X3D . . . EB 2 23.457 -9.646 36.065 1 79.99 ? C35 X3D 200 Q 1 
HETATM 10 C C31 X3D . . . EB 2 22.153 -7.443 40.065 1 79.99 ? C31 X3D 200 Q 1 
HETATM 11 C C14 X3D . . . EB 2 14.983 -7.129 40.361 1 79.99 ? C14 X3D 200 Q 1 
HETATM 12 C C13 X3D . . . EB 2 15.635 -7.848 39.184 1 79.99 ? C13 X3D 200 Q 1 
HETATM 13 C C10 X3D . . . EB 2 18.346 -10.614 39.088 1 79.99 ? C10 X3D 200 Q 1 
HETATM 14 C C30 X3D . . . EB 2 22.247 -6.316 41.09 1 79.99 ? C30 X3D 200 Q 1 
HETATM 15 C C29 X3D . . . EB 2 20.978 -5.47 41.109 1 79.99 ? C29 X3D 200 Q 1 
HETATM 16 C C32 X3D . . . EB 2 23.414 -7.567 39.215 1 79.99 ? C32 X3D 200 Q 1 
HETATM 17 C C34 X3D . . . EB 2 24.151 -8.79 37.12 1 79.99 ? C34 X3D 200 Q 1 
HETATM 18 C C33 X3D . . . EB 2 23.474 -8.904 38.483 1 79.99 ? C33 X3D 200 Q 1 
HETATM 19 C C37 X3D . . . EB 2 23.775 -10.823 33.848 1 79.99 ? C37 X3D 200 Q 1 
HETATM 20 C C38 X3D . . . EB 2 24.594 -10.902 32.562 1 79.99 ? C38 X3D 200 Q 1 
HETATM 21 C C01 X3D . . . EB 2 18.032 -16.549 29.923 1 79.99 ? C01 X3D 200 Q 1 
HETATM 22 C C02 X3D . . . EB 2 19.041 -15.981 30.917 1 79.99 ? C02 X3D 200 Q 1 
HETATM 23 C C03 X3D . . . EB 2 18.368 -15.215 32.053 1 79.99 ? C03 X3D 200 Q 1 
HETATM 24 C C04 X3D . . . EB 2 19.384 -14.587 33.004 1 79.99 ? C04 X3D 200 Q 1 
HETATM 25 C C05 X3D . . . EB 2 18.727 -13.674 34.035 1 79.99 ? C05 X3D 200 Q 1 
HETATM 26 C C06 X3D . . . EB 2 19.57 -13.534 35.3 1 79.99 ? C06 X3D 200 Q 1 
HETATM 27 C C07 X3D . . . EB 2 19.387 -12.171 35.958 1 79.99 ? C07 X3D 200 Q 1 
HETATM 28 C C08 X3D . . . EB 2 19.461 -12.231 37.481 1 79.99 ? C08 X3D 200 Q 1 
HETATM 29 C C09 X3D . . . EB 2 19.481 -10.832 38.092 1 79.99 ? C09 X3D 200 Q 1 
HETATM 30 C C26 X3D . . . EB 2 17.819 -6.096 41.336 1 79.99 ? C26 X3D 200 Q 1 
HETATM 31 N N23 X3D . . . EB 2 10.113 -4.46 40.176 1 79.99 ? N23 X3D 200 Q 1 
HETATM 32 O O15 X3D . . . EB 2 15.521 -5.927 40.83 1 79.99 ? O15 X3D 200 Q 1 
HETATM 33 O O18 X3D . . . EB 2 14.847 -4.979 43.334 1 79.99 ? O18 X3D 200 Q 1 
HETATM 34 O O20 X3D . . . EB 2 12.122 -3.724 42.953 1 79.99 ? O20 X3D 200 Q 1 
HETATM 35 O O24 X3D . . . EB 2 13.231 -5.176 42.119 1 79.99 ? O24 X3D 200 Q 1 
HETATM 36 O O25 X3D . . . EB 2 13.745 -3.459 44.186 1 79.99 ? O25 X3D 200 Q 1 
HETATM 37 O O27 X3D . . . EB 2 18.692 -5.427 42.194 1 79.99 ? O27 X3D 200 Q 1 
HETATM 38 O O39 X3D . . . EB 2 20.306 -6.793 42.932 1 79.99 ? O39 X3D 200 Q 1 
HETATM 39 O O40 X3D . . . EB 2 14.022 -7.591 40.875 1 79.99 ? O40 X3D 200 Q 1 
HETATM 40 P P19 X3D . . . EB 2 13.747 -3.903 42.744 1 79.99 ? P19 X3D 200 Q 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           40 
#