data_8EXJ # _model_server_result.job_id 5PXiB9MSpBjtQdvp9BbdFA _model_server_result.datetime_utc '2024-11-16 08:50:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8exj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":303}' # _entry.id 8EXJ # _exptl.entry_id 8EXJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8EXJ _cell.length_a 88.578 _cell.length_b 88.578 _cell.length_c 132.433 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EXJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 338 n n C C2 TRS sing 339 n n C C3 TRS sing 340 n n C N TRS sing 341 n n C1 O1 TRS sing 342 n n C1 H11 TRS sing 343 n n C1 H12 TRS sing 344 n n C2 O2 TRS sing 345 n n C2 H21 TRS sing 346 n n C2 H22 TRS sing 347 n n C3 O3 TRS sing 348 n n C3 H31 TRS sing 349 n n C3 H32 TRS sing 350 n n N HN1 TRS sing 351 n n N HN2 TRS sing 352 n n N HN3 TRS sing 353 n n O1 HO1 TRS sing 354 n n O2 HO2 TRS sing 355 n n O3 HO3 TRS sing 356 n n # _atom_sites.entry_id 8EXJ _atom_sites.fract_transf_matrix[1][1] 0.011289 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011289 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007551 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PO4 A 1 301 1 PO4 PO4 . D 4 TRS A 1 302 1 TRS TRS . E 4 TRS A 1 303 2 TRS TRS . F 5 HOH A 1 401 8 HOH HOH . F 5 HOH A 2 402 35 HOH HOH . F 5 HOH A 3 403 17 HOH HOH . F 5 HOH A 4 404 27 HOH HOH . F 5 HOH A 5 405 7 HOH HOH . F 5 HOH A 6 406 26 HOH HOH . F 5 HOH A 7 407 82 HOH HOH . F 5 HOH A 8 408 5 HOH HOH . F 5 HOH A 9 409 25 HOH HOH . F 5 HOH A 10 410 1 HOH HOH . F 5 HOH A 11 411 22 HOH HOH . F 5 HOH A 12 412 10 HOH HOH . F 5 HOH A 13 413 102 HOH HOH . F 5 HOH A 14 414 24 HOH HOH . F 5 HOH A 15 415 9 HOH HOH . F 5 HOH A 16 416 33 HOH HOH . F 5 HOH A 17 417 23 HOH HOH . F 5 HOH A 18 418 19 HOH HOH . F 5 HOH A 19 419 101 HOH HOH . F 5 HOH A 20 420 104 HOH HOH . F 5 HOH A 21 421 45 HOH HOH . F 5 HOH A 22 422 12 HOH HOH . F 5 HOH A 23 423 20 HOH HOH . F 5 HOH A 24 424 41 HOH HOH . F 5 HOH A 25 425 2 HOH HOH . F 5 HOH A 26 426 115 HOH HOH . F 5 HOH A 27 427 11 HOH HOH . F 5 HOH A 28 428 36 HOH HOH . F 5 HOH A 29 429 6 HOH HOH . F 5 HOH A 30 430 15 HOH HOH . F 5 HOH A 31 431 44 HOH HOH . F 5 HOH A 32 432 107 HOH HOH . F 5 HOH A 33 433 100 HOH HOH . F 5 HOH A 34 434 109 HOH HOH . F 5 HOH A 35 435 3 HOH HOH . F 5 HOH A 36 436 38 HOH HOH . F 5 HOH A 37 437 14 HOH HOH . F 5 HOH A 38 438 106 HOH HOH . F 5 HOH A 39 439 75 HOH HOH . F 5 HOH A 40 440 114 HOH HOH . F 5 HOH A 41 441 48 HOH HOH . F 5 HOH A 42 442 37 HOH HOH . F 5 HOH A 43 443 63 HOH HOH . F 5 HOH A 44 444 29 HOH HOH . F 5 HOH A 45 445 70 HOH HOH . F 5 HOH A 46 446 110 HOH HOH . F 5 HOH A 47 447 111 HOH HOH . F 5 HOH A 48 448 42 HOH HOH . F 5 HOH A 49 449 98 HOH HOH . F 5 HOH A 50 450 56 HOH HOH . F 5 HOH A 51 451 112 HOH HOH . F 5 HOH A 52 452 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . E 4 19.075 4.466 -12.696 1 81.26 ? C TRS 303 A 1 HETATM 2 C C1 TRS . . . E 4 18.036 5.135 -11.744 1 83.62 ? C1 TRS 303 A 1 HETATM 3 C C2 TRS . . . E 4 19.854 5.724 -13.191 1 73.2 ? C2 TRS 303 A 1 HETATM 4 C C3 TRS . . . E 4 20.091 3.71 -11.792 1 82.61 ? C3 TRS 303 A 1 HETATM 5 N N TRS . . . E 4 18.488 3.458 -13.787 1 74.3 ? N TRS 303 A 1 HETATM 6 O O1 TRS . . . E 4 17.876 4.466 -10.503 1 91.2 ? O1 TRS 303 A 1 HETATM 7 O O2 TRS . . . E 4 21.083 5.405 -13.83 1 72.37 ? O2 TRS 303 A 1 HETATM 8 O O3 TRS . . . E 4 20.98 2.933 -12.585 1 81.82 ? O3 TRS 303 A 1 HETATM 9 H H11 TRS . . . E 4 17.071 5.171 -12.249 1 100.41 ? H11 TRS 303 A 1 HETATM 10 H H12 TRS . . . E 4 18.351 6.16 -11.549 1 100.41 ? H12 TRS 303 A 1 HETATM 11 H H21 TRS . . . E 4 20.056 6.372 -12.338 1 87.91 ? H21 TRS 303 A 1 HETATM 12 H H22 TRS . . . E 4 19.225 6.277 -13.889 1 87.91 ? H22 TRS 303 A 1 HETATM 13 H H31 TRS . . . E 4 19.554 3.06 -11.101 1 99.2 ? H31 TRS 303 A 1 HETATM 14 H H32 TRS . . . E 4 20.661 4.428 -11.201 1 99.2 ? H32 TRS 303 A 1 HETATM 15 H HN1 TRS . . . E 4 17.949 2.65 -13.493 1 89.23 ? HN1 TRS 303 A 1 HETATM 16 H HN2 TRS . . . E 4 19.117 2.969 -14.416 1 89.23 ? HN2 TRS 303 A 1 HETATM 17 H HN3 TRS . . . E 4 17.84 3.794 -14.491 1 89.23 ? HN3 TRS 303 A 1 HETATM 18 H HO1 TRS . . . E 4 17.066 4.793 -10.059 1 109.51 ? HO1 TRS 303 A 1 HETATM 19 H HO2 TRS . . . E 4 21.536 6.232 -14.098 1 86.91 ? HO2 TRS 303 A 1 HETATM 20 H HO3 TRS . . . E 4 20.467 2.425 -13.248 1 98.25 ? HO3 TRS 303 A 1 # _model_server_stats.io_time_ms 106 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #