data_8EXM # _model_server_result.job_id 93VnPdAFxorF6lCkMgs56w _model_server_result.datetime_utc '2024-11-26 09:36:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8exm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 8EXM # _exptl.entry_id 8EXM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8EXM _cell.length_a 88.59 _cell.length_b 88.59 _cell.length_c 132.165 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EXM _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 338 n n C C2 TRS sing 339 n n C C3 TRS sing 340 n n C N TRS sing 341 n n C1 O1 TRS sing 342 n n C1 H11 TRS sing 343 n n C1 H12 TRS sing 344 n n C2 O2 TRS sing 345 n n C2 H21 TRS sing 346 n n C2 H22 TRS sing 347 n n C3 O3 TRS sing 348 n n C3 H31 TRS sing 349 n n C3 H32 TRS sing 350 n n N HN1 TRS sing 351 n n N HN2 TRS sing 352 n n N HN3 TRS sing 353 n n O1 HO1 TRS sing 354 n n O2 HO2 TRS sing 355 n n O3 HO3 TRS sing 356 n n # _atom_sites.entry_id 8EXM _atom_sites.fract_transf_matrix[1][1] 0.011288 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011288 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007566 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PO4 A 1 301 1 PO4 PO4 . D 4 TRS A 1 302 1 TRS TRS . E 5 HOH A 1 401 82 HOH HOH . E 5 HOH A 2 402 12 HOH HOH . E 5 HOH A 3 403 9 HOH HOH . E 5 HOH A 4 404 62 HOH HOH . E 5 HOH A 5 405 51 HOH HOH . E 5 HOH A 6 406 79 HOH HOH . E 5 HOH A 7 407 66 HOH HOH . E 5 HOH A 8 408 2 HOH HOH . E 5 HOH A 9 409 85 HOH HOH . E 5 HOH A 10 410 26 HOH HOH . E 5 HOH A 11 411 136 HOH HOH . E 5 HOH A 12 412 20 HOH HOH . E 5 HOH A 13 413 134 HOH HOH . E 5 HOH A 14 414 5 HOH HOH . E 5 HOH A 15 415 52 HOH HOH . E 5 HOH A 16 416 19 HOH HOH . E 5 HOH A 17 417 17 HOH HOH . E 5 HOH A 18 418 29 HOH HOH . E 5 HOH A 19 419 15 HOH HOH . E 5 HOH A 20 420 24 HOH HOH . E 5 HOH A 21 421 10 HOH HOH . E 5 HOH A 22 422 53 HOH HOH . E 5 HOH A 23 423 31 HOH HOH . E 5 HOH A 24 424 116 HOH HOH . E 5 HOH A 25 425 25 HOH HOH . E 5 HOH A 26 426 28 HOH HOH . E 5 HOH A 27 427 81 HOH HOH . E 5 HOH A 28 428 123 HOH HOH . E 5 HOH A 29 429 1 HOH HOH . E 5 HOH A 30 430 7 HOH HOH . E 5 HOH A 31 431 3 HOH HOH . E 5 HOH A 32 432 21 HOH HOH . E 5 HOH A 33 433 6 HOH HOH . E 5 HOH A 34 434 34 HOH HOH . E 5 HOH A 35 435 32 HOH HOH . E 5 HOH A 36 436 58 HOH HOH . E 5 HOH A 37 437 97 HOH HOH . E 5 HOH A 38 438 8 HOH HOH . E 5 HOH A 39 439 4 HOH HOH . E 5 HOH A 40 440 148 HOH HOH . E 5 HOH A 41 441 63 HOH HOH . E 5 HOH A 42 442 22 HOH HOH . E 5 HOH A 43 443 45 HOH HOH . E 5 HOH A 44 444 131 HOH HOH . E 5 HOH A 45 445 13 HOH HOH . E 5 HOH A 46 446 35 HOH HOH . E 5 HOH A 47 447 11 HOH HOH . E 5 HOH A 48 448 117 HOH HOH . E 5 HOH A 49 449 71 HOH HOH . E 5 HOH A 50 450 55 HOH HOH . E 5 HOH A 51 451 139 HOH HOH . E 5 HOH A 52 452 94 HOH HOH . E 5 HOH A 53 453 23 HOH HOH . E 5 HOH A 54 454 49 HOH HOH . E 5 HOH A 55 455 95 HOH HOH . E 5 HOH A 56 456 43 HOH HOH . E 5 HOH A 57 457 18 HOH HOH . E 5 HOH A 58 458 144 HOH HOH . E 5 HOH A 59 459 107 HOH HOH . E 5 HOH A 60 460 137 HOH HOH . E 5 HOH A 61 461 37 HOH HOH . E 5 HOH A 62 462 16 HOH HOH . E 5 HOH A 63 463 102 HOH HOH . E 5 HOH A 64 464 86 HOH HOH . E 5 HOH A 65 465 90 HOH HOH . E 5 HOH A 66 466 92 HOH HOH . E 5 HOH A 67 467 135 HOH HOH . E 5 HOH A 68 468 87 HOH HOH . E 5 HOH A 69 469 132 HOH HOH . E 5 HOH A 70 470 56 HOH HOH . E 5 HOH A 71 471 115 HOH HOH . E 5 HOH A 72 472 98 HOH HOH . E 5 HOH A 73 473 38 HOH HOH . E 5 HOH A 74 474 83 HOH HOH . E 5 HOH A 75 475 59 HOH HOH . E 5 HOH A 76 476 36 HOH HOH . E 5 HOH A 77 477 114 HOH HOH . E 5 HOH A 78 478 138 HOH HOH . E 5 HOH A 79 479 109 HOH HOH . E 5 HOH A 80 480 130 HOH HOH . E 5 HOH A 81 481 30 HOH HOH . E 5 HOH A 82 482 104 HOH HOH . E 5 HOH A 83 483 129 HOH HOH . E 5 HOH A 84 484 64 HOH HOH . E 5 HOH A 85 485 108 HOH HOH . E 5 HOH A 86 486 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . D 4 19.285 4.168 -12.792 1 65.78 ? C TRS 302 A 1 HETATM 2 C C1 TRS . . . D 4 18.425 4.144 -11.499 1 71.52 ? C1 TRS 302 A 1 HETATM 3 C C2 TRS . . . D 4 19.8 5.619 -12.984 1 59.78 ? C2 TRS 302 A 1 HETATM 4 C C3 TRS . . . D 4 20.552 3.313 -12.474 1 69.25 ? C3 TRS 302 A 1 HETATM 5 N N TRS . . . D 4 18.524 3.587 -14.029 1 63.91 ? N TRS 302 A 1 HETATM 6 O O1 TRS . . . D 4 18.134 2.789 -11.187 1 82.82 ? O1 TRS 302 A 1 HETATM 7 O O2 TRS . . . D 4 21.021 5.589 -13.708 1 60.14 ? O2 TRS 302 A 1 HETATM 8 O O3 TRS . . . D 4 21.094 2.749 -13.666 1 59.81 ? O3 TRS 302 A 1 HETATM 9 H H11 TRS . . . D 4 17.501 4.702 -11.651 1 85.86 ? H11 TRS 302 A 1 HETATM 10 H H12 TRS . . . D 4 18.967 4.611 -10.677 1 85.86 ? H12 TRS 302 A 1 HETATM 11 H H21 TRS . . . D 4 19.955 6.09 -12.013 1 71.77 ? H21 TRS 302 A 1 HETATM 12 H H22 TRS . . . D 4 19.06 6.207 -13.527 1 71.77 ? H22 TRS 302 A 1 HETATM 13 H H31 TRS . . . D 4 20.288 2.515 -11.78 1 83.14 ? H31 TRS 302 A 1 HETATM 14 H H32 TRS . . . D 4 21.303 3.94 -11.993 1 83.14 ? H32 TRS 302 A 1 HETATM 15 H HN1 TRS . . . D 4 18.03 2.704 -13.953 1 76.73 ? HN1 TRS 302 A 1 HETATM 16 H HN2 TRS . . . D 4 19.03 3.375 -14.883 1 76.73 ? HN2 TRS 302 A 1 HETATM 17 H HN3 TRS . . . D 4 17.771 4.117 -14.457 1 76.73 ? HN3 TRS 302 A 1 HETATM 18 H HO1 TRS . . . D 4 17.688 2.743 -10.316 1 99.42 ? HO1 TRS 302 A 1 HETATM 19 H HO2 TRS . . . D 4 21.377 6.499 -13.786 1 72.2 ? HO2 TRS 302 A 1 HETATM 20 H HO3 TRS . . . D 4 20.414 2.195 -14.104 1 71.81 ? HO3 TRS 302 A 1 # _model_server_stats.io_time_ms 84 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #