data_8EXO # _model_server_result.job_id OKmFOIdn2pEhmkjZ3cah5g _model_server_result.datetime_utc '2025-01-23 18:26:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8exo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 8EXO # _exptl.entry_id 8EXO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 425.481 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-{(4S,11aM)-2-[(4R)-2-oxo-4-(propan-2-yl)-1,3-oxazolidin-3-yl]-5,6-dihydroimidazo[1,2-d][1,4]benzoxazepin-9-yl}-L-prolinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8EXO _cell.length_a 58.48 _cell.length_b 133.879 _cell.length_c 141.288 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EXO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H27 N5 O4' _chem_comp.formula_weight 425.481 _chem_comp.id X3W _chem_comp.mon_nstd_flag . _chem_comp.name 1-{(4S,11aM)-2-[(4R)-2-oxo-4-(propan-2-yl)-1,3-oxazolidin-3-yl]-5,6-dihydroimidazo[1,2-d][1,4]benzoxazepin-9-yl}-L-prolinamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O9 C8 X3W doub 376 n n O7 C8 X3W sing 377 n n O7 C6 X3W sing 378 n n C8 N10 X3W sing 379 n n C6 C4 X3W sing 380 n n N10 C4 X3W sing 381 n n N10 C11 X3W sing 382 n n C4 C2 X3W sing 383 n n C12 C11 X3W doub 384 n y C12 N13 X3W sing 385 n y C11 N15 X3W sing 386 n y N13 C24 X3W sing 387 n n N13 C14 X3W sing 388 n y C2 C3 X3W sing 389 n n C2 C1 X3W sing 390 n n N15 C14 X3W doub 391 n y C24 C23 X3W sing 392 n n C23 O22 X3W sing 393 n n C14 C16 X3W sing 394 n n C16 C21 X3W doub 395 n y C16 C17 X3W sing 396 n y O22 C21 X3W sing 397 n n C21 C20 X3W sing 398 n y C17 C18 X3W doub 399 n y C20 C19 X3W doub 400 n y C18 C19 X3W sing 401 n y N33 C31 X3W sing 402 n n C19 N25 X3W sing 403 n n C31 O32 X3W doub 404 n n C31 C29 X3W sing 405 n n N25 C29 X3W sing 406 n n N25 C26 X3W sing 407 n n C29 C28 X3W sing 408 n n C26 C27 X3W sing 409 n n C27 C28 X3W sing 410 n n C4 H5 X3W sing 411 n n C6 H1 X3W sing 412 n n C6 H2 X3W sing 413 n n C12 H3 X3W sing 414 n n C3 H4 X3W sing 415 n n C3 H6 X3W sing 416 n n C3 H7 X3W sing 417 n n C1 H8 X3W sing 418 n n C1 H9 X3W sing 419 n n C1 H10 X3W sing 420 n n C2 H11 X3W sing 421 n n C17 H12 X3W sing 422 n n C18 H13 X3W sing 423 n n C20 H14 X3W sing 424 n n C23 H15 X3W sing 425 n n C23 H16 X3W sing 426 n n C24 H17 X3W sing 427 n n C24 H18 X3W sing 428 n n C26 H19 X3W sing 429 n n C26 H20 X3W sing 430 n n C27 H21 X3W sing 431 n n C27 H22 X3W sing 432 n n C28 H23 X3W sing 433 n n C28 H24 X3W sing 434 n n C29 H30 X3W sing 435 n n N33 H25 X3W sing 436 n n N33 H26 X3W sing 437 n n # _atom_sites.entry_id 8EXO _atom_sites.fract_transf_matrix[1][1] 0.0171 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007469 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007078 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 X3W A 1 1101 1 X3W DRG . C 3 HOH A 1 1201 1 HOH HOH . C 3 HOH A 2 1202 2 HOH HOH . C 3 HOH A 3 1203 69 HOH HOH . C 3 HOH A 4 1204 137 HOH HOH . C 3 HOH A 5 1205 21 HOH HOH . C 3 HOH A 6 1206 28 HOH HOH . C 3 HOH A 7 1207 16 HOH HOH . C 3 HOH A 8 1208 136 HOH HOH . C 3 HOH A 9 1209 31 HOH HOH . C 3 HOH A 10 1210 93 HOH HOH . C 3 HOH A 11 1211 59 HOH HOH . C 3 HOH A 12 1212 83 HOH HOH . C 3 HOH A 13 1213 186 HOH HOH . C 3 HOH A 14 1214 4 HOH HOH . C 3 HOH A 15 1215 17 HOH HOH . C 3 HOH A 16 1216 67 HOH HOH . C 3 HOH A 17 1217 5 HOH HOH . C 3 HOH A 18 1218 101 HOH HOH . C 3 HOH A 19 1219 40 HOH HOH . C 3 HOH A 20 1220 9 HOH HOH . C 3 HOH A 21 1221 110 HOH HOH . C 3 HOH A 22 1222 7 HOH HOH . C 3 HOH A 23 1223 191 HOH HOH . C 3 HOH A 24 1224 43 HOH HOH . C 3 HOH A 25 1225 94 HOH HOH . C 3 HOH A 26 1226 147 HOH HOH . C 3 HOH A 27 1227 189 HOH HOH . C 3 HOH A 28 1228 36 HOH HOH . C 3 HOH A 29 1229 194 HOH HOH . C 3 HOH A 30 1230 73 HOH HOH . C 3 HOH A 31 1231 41 HOH HOH . C 3 HOH A 32 1232 96 HOH HOH . C 3 HOH A 33 1233 47 HOH HOH . C 3 HOH A 34 1234 117 HOH HOH . C 3 HOH A 35 1235 35 HOH HOH . C 3 HOH A 36 1236 174 HOH HOH . C 3 HOH A 37 1237 13 HOH HOH . C 3 HOH A 38 1238 71 HOH HOH . C 3 HOH A 39 1239 51 HOH HOH . C 3 HOH A 40 1240 76 HOH HOH . C 3 HOH A 41 1241 142 HOH HOH . C 3 HOH A 42 1242 25 HOH HOH . C 3 HOH A 43 1243 11 HOH HOH . C 3 HOH A 44 1244 6 HOH HOH . C 3 HOH A 45 1245 34 HOH HOH . C 3 HOH A 46 1246 32 HOH HOH . C 3 HOH A 47 1247 68 HOH HOH . C 3 HOH A 48 1248 20 HOH HOH . C 3 HOH A 49 1249 39 HOH HOH . C 3 HOH A 50 1250 179 HOH HOH . C 3 HOH A 51 1251 55 HOH HOH . C 3 HOH A 52 1252 114 HOH HOH . C 3 HOH A 53 1253 81 HOH HOH . C 3 HOH A 54 1254 10 HOH HOH . C 3 HOH A 55 1255 65 HOH HOH . C 3 HOH A 56 1256 63 HOH HOH . C 3 HOH A 57 1257 44 HOH HOH . C 3 HOH A 58 1258 57 HOH HOH . C 3 HOH A 59 1259 61 HOH HOH . C 3 HOH A 60 1260 45 HOH HOH . C 3 HOH A 61 1261 50 HOH HOH . C 3 HOH A 62 1262 14 HOH HOH . C 3 HOH A 63 1263 141 HOH HOH . C 3 HOH A 64 1264 129 HOH HOH . C 3 HOH A 65 1265 164 HOH HOH . C 3 HOH A 66 1266 116 HOH HOH . C 3 HOH A 67 1267 84 HOH HOH . C 3 HOH A 68 1268 66 HOH HOH . C 3 HOH A 69 1269 151 HOH HOH . C 3 HOH A 70 1270 56 HOH HOH . C 3 HOH A 71 1271 158 HOH HOH . C 3 HOH A 72 1272 153 HOH HOH . C 3 HOH A 73 1273 89 HOH HOH . C 3 HOH A 74 1274 48 HOH HOH . C 3 HOH A 75 1275 90 HOH HOH . C 3 HOH A 76 1276 3 HOH HOH . C 3 HOH A 77 1277 87 HOH HOH . C 3 HOH A 78 1278 130 HOH HOH . C 3 HOH A 79 1279 112 HOH HOH . C 3 HOH A 80 1280 127 HOH HOH . C 3 HOH A 81 1281 60 HOH HOH . C 3 HOH A 82 1282 178 HOH HOH . C 3 HOH A 83 1283 109 HOH HOH . C 3 HOH A 84 1284 119 HOH HOH . C 3 HOH A 85 1285 104 HOH HOH . C 3 HOH A 86 1286 24 HOH HOH . C 3 HOH A 87 1287 42 HOH HOH . C 3 HOH A 88 1288 27 HOH HOH . C 3 HOH A 89 1289 162 HOH HOH . C 3 HOH A 90 1290 38 HOH HOH . C 3 HOH A 91 1291 80 HOH HOH . C 3 HOH A 92 1292 106 HOH HOH . C 3 HOH A 93 1293 86 HOH HOH . C 3 HOH A 94 1294 111 HOH HOH . C 3 HOH A 95 1295 98 HOH HOH . C 3 HOH A 96 1296 138 HOH HOH . C 3 HOH A 97 1297 82 HOH HOH . C 3 HOH A 98 1298 22 HOH HOH . C 3 HOH A 99 1299 195 HOH HOH . C 3 HOH A 100 1300 128 HOH HOH . C 3 HOH A 101 1301 18 HOH HOH . C 3 HOH A 102 1302 123 HOH HOH . C 3 HOH A 103 1303 46 HOH HOH . C 3 HOH A 104 1304 72 HOH HOH . C 3 HOH A 105 1305 74 HOH HOH . C 3 HOH A 106 1306 23 HOH HOH . C 3 HOH A 107 1307 30 HOH HOH . C 3 HOH A 108 1308 97 HOH HOH . C 3 HOH A 109 1309 118 HOH HOH . C 3 HOH A 110 1310 165 HOH HOH . C 3 HOH A 111 1311 177 HOH HOH . C 3 HOH A 112 1312 62 HOH HOH . C 3 HOH A 113 1313 172 HOH HOH . C 3 HOH A 114 1314 149 HOH HOH . C 3 HOH A 115 1315 12 HOH HOH . C 3 HOH A 116 1316 125 HOH HOH . C 3 HOH A 117 1317 92 HOH HOH . C 3 HOH A 118 1318 100 HOH HOH . C 3 HOH A 119 1319 26 HOH HOH . C 3 HOH A 120 1320 79 HOH HOH . C 3 HOH A 121 1321 78 HOH HOH . C 3 HOH A 122 1322 150 HOH HOH . C 3 HOH A 123 1323 37 HOH HOH . C 3 HOH A 124 1324 58 HOH HOH . C 3 HOH A 125 1325 154 HOH HOH . C 3 HOH A 126 1326 121 HOH HOH . C 3 HOH A 127 1327 180 HOH HOH . C 3 HOH A 128 1328 181 HOH HOH . C 3 HOH A 129 1329 33 HOH HOH . C 3 HOH A 130 1330 171 HOH HOH . C 3 HOH A 131 1331 95 HOH HOH . C 3 HOH A 132 1332 91 HOH HOH . C 3 HOH A 133 1333 159 HOH HOH . C 3 HOH A 134 1334 168 HOH HOH . C 3 HOH A 135 1335 75 HOH HOH . C 3 HOH A 136 1336 52 HOH HOH . C 3 HOH A 137 1337 105 HOH HOH . C 3 HOH A 138 1338 53 HOH HOH . C 3 HOH A 139 1339 144 HOH HOH . C 3 HOH A 140 1340 143 HOH HOH . C 3 HOH A 141 1341 145 HOH HOH . C 3 HOH A 142 1342 88 HOH HOH . C 3 HOH A 143 1343 8 HOH HOH . C 3 HOH A 144 1344 77 HOH HOH . C 3 HOH A 145 1345 64 HOH HOH . C 3 HOH A 146 1346 188 HOH HOH . C 3 HOH A 147 1347 49 HOH HOH . C 3 HOH A 148 1348 29 HOH HOH . C 3 HOH A 149 1349 190 HOH HOH . C 3 HOH A 150 1350 85 HOH HOH . C 3 HOH A 151 1351 176 HOH HOH . C 3 HOH A 152 1352 146 HOH HOH . C 3 HOH A 153 1353 184 HOH HOH . C 3 HOH A 154 1354 124 HOH HOH . C 3 HOH A 155 1355 131 HOH HOH . C 3 HOH A 156 1356 185 HOH HOH . C 3 HOH A 157 1357 134 HOH HOH . C 3 HOH A 158 1358 166 HOH HOH . C 3 HOH A 159 1359 126 HOH HOH . C 3 HOH A 160 1360 175 HOH HOH . C 3 HOH A 161 1361 102 HOH HOH . C 3 HOH A 162 1362 173 HOH HOH . C 3 HOH A 163 1363 193 HOH HOH . C 3 HOH A 164 1364 108 HOH HOH . C 3 HOH A 165 1365 99 HOH HOH . C 3 HOH A 166 1366 169 HOH HOH . C 3 HOH A 167 1367 15 HOH HOH . C 3 HOH A 168 1368 54 HOH HOH . C 3 HOH A 169 1369 192 HOH HOH . C 3 HOH A 170 1370 115 HOH HOH . C 3 HOH A 171 1371 155 HOH HOH . C 3 HOH A 172 1372 160 HOH HOH . C 3 HOH A 173 1373 163 HOH HOH . C 3 HOH A 174 1374 139 HOH HOH . C 3 HOH A 175 1375 120 HOH HOH . C 3 HOH A 176 1376 161 HOH HOH . C 3 HOH A 177 1377 170 HOH HOH . C 3 HOH A 178 1378 167 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 X3W . . . B 2 -17.751 9.9 26.457 1 44.5 ? C4 X3W 1101 A 1 HETATM 2 C C14 X3W . . . B 2 -16.127 13.33 28.42 1 39.79 ? C14 X3W 1101 A 1 HETATM 3 C C6 X3W . . . B 2 -17.938 9.036 25.189 1 44.05 ? C6 X3W 1101 A 1 HETATM 4 C C11 X3W . . . B 2 -16.052 11.743 26.913 1 39.08 ? C11 X3W 1101 A 1 HETATM 5 C C8 X3W . . . B 2 -15.894 10.027 25.127 1 43.43 ? C8 X3W 1101 A 1 HETATM 6 C C12 X3W . . . B 2 -14.871 12.406 26.84 1 36.96 ? C12 X3W 1101 A 1 HETATM 7 C C3 X3W . . . B 2 -16.724 7.885 27.823 1 48.33 ? C3 X3W 1101 A 1 HETATM 8 C C1 X3W . . . B 2 -19.079 8.633 28.251 1 41.82 ? C1 X3W 1101 A 1 HETATM 9 C C2 X3W . . . B 2 -17.698 9.076 27.775 1 45.84 ? C2 X3W 1101 A 1 HETATM 10 O O7 X3W . . . B 2 -16.584 8.98 24.663 1 45.48 ? O7 X3W 1101 A 1 HETATM 11 O O9 X3W . . . B 2 -14.829 10.353 24.642 1 43.53 ? O9 X3W 1101 A 1 HETATM 12 N N10 X3W . . . B 2 -16.493 10.626 26.183 1 41.9 ? N10 X3W 1101 A 1 HETATM 13 N N13 X3W . . . B 2 -14.908 13.429 27.75 1 36.01 ? N13 X3W 1101 A 1 HETATM 14 N N15 X3W . . . B 2 -16.781 12.342 27.852 1 41.09 ? N15 X3W 1101 A 1 HETATM 15 C C16 X3W . . . B 2 -16.7 14.212 29.483 1 39.45 ? C16 X3W 1101 A 1 HETATM 16 C C17 X3W . . . B 2 -17.983 13.891 29.96 1 41.03 ? C17 X3W 1101 A 1 HETATM 17 C C18 X3W . . . B 2 -18.618 14.707 30.892 1 40.63 ? C18 X3W 1101 A 1 HETATM 18 C C19 X3W . . . B 2 -17.991 15.864 31.388 1 40.92 ? C19 X3W 1101 A 1 HETATM 19 C C20 X3W . . . B 2 -16.733 16.213 30.874 1 38.76 ? C20 X3W 1101 A 1 HETATM 20 C C21 X3W . . . B 2 -16.081 15.415 29.951 1 40.11 ? C21 X3W 1101 A 1 HETATM 21 O O22 X3W . . . B 2 -14.851 15.811 29.546 1 42.17 ? O22 X3W 1101 A 1 HETATM 22 C C23 X3W . . . B 2 -14.423 15.772 28.192 1 36.88 ? C23 X3W 1101 A 1 HETATM 23 C C24 X3W . . . B 2 -13.84 14.381 27.989 1 34.58 ? C24 X3W 1101 A 1 HETATM 24 N N25 X3W . . . B 2 -18.663 16.747 32.269 1 43.87 ? N25 X3W 1101 A 1 HETATM 25 C C26 X3W . . . B 2 -17.912 17.718 33.12 1 45.11 ? C26 X3W 1101 A 1 HETATM 26 C C27 X3W . . . B 2 -19.039 18.439 33.89 1 45.44 ? C27 X3W 1101 A 1 HETATM 27 C C28 X3W . . . B 2 -20.101 17.34 34.127 1 44.14 ? C28 X3W 1101 A 1 HETATM 28 C C29 X3W . . . B 2 -19.925 16.34 32.965 1 45.36 ? C29 X3W 1101 A 1 HETATM 29 C C31 X3W . . . B 2 -21.085 16.411 31.997 1 43.07 ? C31 X3W 1101 A 1 HETATM 30 O O32 X3W . . . B 2 -21.985 15.598 32.07 1 42.76 ? O32 X3W 1101 A 1 HETATM 31 N N33 X3W . . . B 2 -21.085 17.332 31.012 1 40.5 ? N33 X3W 1101 A 1 HETATM 32 H H5 X3W . . . B 2 -18.559 10.631 26.517 1 44.48 ? H5 X3W 1101 A 1 HETATM 33 H H30 X3W . . . B 2 -19.841 15.332 33.371 1 46.01 ? H30 X3W 1101 A 1 # _model_server_stats.io_time_ms 90 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #