data_8EXU # _model_server_result.job_id ZyA_Dy0qubrCFTNIkTyhPQ _model_server_result.datetime_utc '2024-12-26 11:35:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8exu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 8EXU # _exptl.entry_id 8EXU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 451.399 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-2-cyclopropyl-2-({(4S,11aM)-2-[(4S)-2-oxo-4-(trifluoromethyl)-1,3-oxazolidin-3-yl]-5,6-dihydroimidazo[1,2-d][1,4]benzoxazepin-9-yl}amino)acetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8EXU _cell.length_a 58.641 _cell.length_b 133.719 _cell.length_c 140.952 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EXU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H20 F3 N5 O4' _chem_comp.formula_weight 451.399 _chem_comp.id X3R _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-2-cyclopropyl-2-({(4S,11aM)-2-[(4S)-2-oxo-4-(trifluoromethyl)-1,3-oxazolidin-3-yl]-5,6-dihydroimidazo[1,2-d][1,4]benzoxazepin-9-yl}amino)acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O30 C29 X3R doub 376 n n O28 C29 X3R sing 377 n n O28 C27 X3R sing 378 n n C29 N24 X3R sing 379 n n C27 C25 X3R sing 380 n n N24 C25 X3R sing 381 n n N24 C22 X3R sing 382 n n C25 C31 X3R sing 383 n n C23 C22 X3R doub 384 n y C23 N19 X3R sing 385 n y C22 N21 X3R sing 386 n y F32 C31 X3R sing 387 n n N19 C18 X3R sing 388 n n N19 C20 X3R sing 389 n y C31 F34 X3R sing 390 n n C31 F33 X3R sing 391 n n N21 C20 X3R doub 392 n y C18 C17 X3R sing 393 n n C17 O16 X3R sing 394 n n C20 C3 X3R sing 395 n n C3 C2 X3R doub 396 n y C3 C4 X3R sing 397 n y O16 C4 X3R sing 398 n n C2 C1 X3R sing 399 n y C4 C5 X3R doub 400 n y N15 C13 X3R sing 401 n n C1 C6 X3R doub 402 n y C5 C6 X3R sing 403 n y C6 N7 X3R sing 404 n n O14 C13 X3R doub 405 n n C13 C8 X3R sing 406 n n N7 C8 X3R sing 407 n n C8 C10 X3R sing 408 n n C10 C11 X3R sing 409 n n C10 C12 X3R sing 410 n n C11 C12 X3R sing 411 n n C5 H1 X3R sing 412 n n C11 H2 X3R sing 413 n n C11 H3 X3R sing 414 n n C8 H9 X3R sing 415 n n C10 H4 X3R sing 416 n n C12 H5 X3R sing 417 n n C12 H6 X3R sing 418 n n C1 H7 X3R sing 419 n n C2 H8 X3R sing 420 n n N7 H10 X3R sing 421 n n N15 H11 X3R sing 422 n n N15 H12 X3R sing 423 n n C17 H13 X3R sing 424 n n C17 H14 X3R sing 425 n n C18 H15 X3R sing 426 n n C18 H16 X3R sing 427 n n C23 H17 X3R sing 428 n n C25 H26 X3R sing 429 n n C27 H18 X3R sing 430 n n C27 H19 X3R sing 431 n n # _atom_sites.entry_id 8EXU _atom_sites.fract_transf_matrix[1][1] 0.017053 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007478 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007095 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 X3R A 1 1101 1 X3R DRG . C 3 HOH A 1 1201 9 HOH HOH . C 3 HOH A 2 1202 48 HOH HOH . C 3 HOH A 3 1203 14 HOH HOH . C 3 HOH A 4 1204 11 HOH HOH . C 3 HOH A 5 1205 51 HOH HOH . C 3 HOH A 6 1206 2 HOH HOH . C 3 HOH A 7 1207 66 HOH HOH . C 3 HOH A 8 1208 91 HOH HOH . C 3 HOH A 9 1209 94 HOH HOH . C 3 HOH A 10 1210 29 HOH HOH . C 3 HOH A 11 1211 27 HOH HOH . C 3 HOH A 12 1212 1 HOH HOH . C 3 HOH A 13 1213 6 HOH HOH . C 3 HOH A 14 1214 69 HOH HOH . C 3 HOH A 15 1215 73 HOH HOH . C 3 HOH A 16 1216 74 HOH HOH . C 3 HOH A 17 1217 15 HOH HOH . C 3 HOH A 18 1218 35 HOH HOH . C 3 HOH A 19 1219 72 HOH HOH . C 3 HOH A 20 1220 55 HOH HOH . C 3 HOH A 21 1221 92 HOH HOH . C 3 HOH A 22 1222 75 HOH HOH . C 3 HOH A 23 1223 39 HOH HOH . C 3 HOH A 24 1224 89 HOH HOH . C 3 HOH A 25 1225 20 HOH HOH . C 3 HOH A 26 1226 18 HOH HOH . C 3 HOH A 27 1227 43 HOH HOH . C 3 HOH A 28 1228 3 HOH HOH . C 3 HOH A 29 1229 40 HOH HOH . C 3 HOH A 30 1230 62 HOH HOH . C 3 HOH A 31 1231 17 HOH HOH . C 3 HOH A 32 1232 82 HOH HOH . C 3 HOH A 33 1233 30 HOH HOH . C 3 HOH A 34 1234 24 HOH HOH . C 3 HOH A 35 1235 90 HOH HOH . C 3 HOH A 36 1236 28 HOH HOH . C 3 HOH A 37 1237 88 HOH HOH . C 3 HOH A 38 1238 4 HOH HOH . C 3 HOH A 39 1239 31 HOH HOH . C 3 HOH A 40 1240 5 HOH HOH . C 3 HOH A 41 1241 54 HOH HOH . C 3 HOH A 42 1242 36 HOH HOH . C 3 HOH A 43 1243 12 HOH HOH . C 3 HOH A 44 1244 19 HOH HOH . C 3 HOH A 45 1245 22 HOH HOH . C 3 HOH A 46 1246 61 HOH HOH . C 3 HOH A 47 1247 77 HOH HOH . C 3 HOH A 48 1248 26 HOH HOH . C 3 HOH A 49 1249 83 HOH HOH . C 3 HOH A 50 1250 67 HOH HOH . C 3 HOH A 51 1251 49 HOH HOH . C 3 HOH A 52 1252 37 HOH HOH . C 3 HOH A 53 1253 71 HOH HOH . C 3 HOH A 54 1254 34 HOH HOH . C 3 HOH A 55 1255 16 HOH HOH . C 3 HOH A 56 1256 78 HOH HOH . C 3 HOH A 57 1257 13 HOH HOH . C 3 HOH A 58 1258 63 HOH HOH . C 3 HOH A 59 1259 70 HOH HOH . C 3 HOH A 60 1260 45 HOH HOH . C 3 HOH A 61 1261 60 HOH HOH . C 3 HOH A 62 1262 33 HOH HOH . C 3 HOH A 63 1263 38 HOH HOH . C 3 HOH A 64 1264 68 HOH HOH . C 3 HOH A 65 1265 7 HOH HOH . C 3 HOH A 66 1266 44 HOH HOH . C 3 HOH A 67 1267 84 HOH HOH . C 3 HOH A 68 1268 47 HOH HOH . C 3 HOH A 69 1269 96 HOH HOH . C 3 HOH A 70 1270 53 HOH HOH . C 3 HOH A 71 1271 42 HOH HOH . C 3 HOH A 72 1272 21 HOH HOH . C 3 HOH A 73 1273 76 HOH HOH . C 3 HOH A 74 1274 25 HOH HOH . C 3 HOH A 75 1275 79 HOH HOH . C 3 HOH A 76 1276 8 HOH HOH . C 3 HOH A 77 1277 10 HOH HOH . C 3 HOH A 78 1278 65 HOH HOH . C 3 HOH A 79 1279 64 HOH HOH . C 3 HOH A 80 1280 87 HOH HOH . C 3 HOH A 81 1281 41 HOH HOH . C 3 HOH A 82 1282 80 HOH HOH . C 3 HOH A 83 1283 32 HOH HOH . C 3 HOH A 84 1284 23 HOH HOH . C 3 HOH A 85 1285 93 HOH HOH . C 3 HOH A 86 1286 81 HOH HOH . C 3 HOH A 87 1287 56 HOH HOH . C 3 HOH A 88 1288 85 HOH HOH . C 3 HOH A 89 1289 50 HOH HOH . C 3 HOH A 90 1290 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 X3R . . . B 2 -15.976 15.303 30.086 1 39.44 ? C4 X3R 1101 A 1 HETATM 2 C C5 X3R . . . B 2 -16.658 16.083 31.004 1 41.48 ? C5 X3R 1101 A 1 HETATM 3 C C6 X3R . . . B 2 -17.934 15.708 31.437 1 45.17 ? C6 X3R 1101 A 1 HETATM 4 C C11 X3R . . . B 2 -21.532 16.728 34.9 1 48.36 ? C11 X3R 1101 A 1 HETATM 5 C C8 X3R . . . B 2 -19.939 16.175 32.906 1 49.9 ? C8 X3R 1101 A 1 HETATM 6 C C10 X3R . . . B 2 -20.297 17.101 34.078 1 49.56 ? C10 X3R 1101 A 1 HETATM 7 C C12 X3R . . . B 2 -20.135 16.576 35.509 1 47.66 ? C12 X3R 1101 A 1 HETATM 8 C C13 X3R . . . B 2 -20.962 16.319 31.814 1 49.35 ? C13 X3R 1101 A 1 HETATM 9 C C3 X3R . . . B 2 -16.547 14.073 29.623 1 42.88 ? C3 X3R 1101 A 1 HETATM 10 C C1 X3R . . . B 2 -18.509 14.523 30.96 1 45.25 ? C1 X3R 1101 A 1 HETATM 11 C C2 X3R . . . B 2 -17.835 13.733 30.05 1 45.61 ? C2 X3R 1101 A 1 HETATM 12 N N7 X3R . . . B 2 -18.602 16.51 32.377 1 48.12 ? N7 X3R 1101 A 1 HETATM 13 O O14 X3R . . . B 2 -21.836 15.479 31.722 1 48.68 ? O14 X3R 1101 A 1 HETATM 14 N N15 X3R . . . B 2 -20.87 17.347 30.936 1 49.46 ? N15 X3R 1101 A 1 HETATM 15 O O16 X3R . . . B 2 -14.758 15.721 29.71 1 39.23 ? O16 X3R 1101 A 1 HETATM 16 C C17 X3R . . . B 2 -14.315 15.706 28.355 1 39.05 ? C17 X3R 1101 A 1 HETATM 17 C C18 X3R . . . B 2 -13.72 14.333 28.077 1 37.84 ? C18 X3R 1101 A 1 HETATM 18 N N19 X3R . . . B 2 -14.768 13.348 27.861 1 41.77 ? N19 X3R 1101 A 1 HETATM 19 C C20 X3R . . . B 2 -15.954 13.188 28.572 1 43.87 ? C20 X3R 1101 A 1 HETATM 20 N N21 X3R . . . B 2 -16.566 12.147 28.056 1 45.64 ? N21 X3R 1101 A 1 HETATM 21 C C22 X3R . . . B 2 -15.833 11.564 27.095 1 47.53 ? C22 X3R 1101 A 1 HETATM 22 C C23 X3R . . . B 2 -14.711 12.314 26.959 1 45.57 ? C23 X3R 1101 A 1 HETATM 23 N N24 X3R . . . B 2 -16.262 10.442 26.338 1 50.53 ? N24 X3R 1101 A 1 HETATM 24 C C25 X3R . . . B 2 -17.46 9.639 26.663 1 49.94 ? C25 X3R 1101 A 1 HETATM 25 C C27 X3R . . . B 2 -17.702 8.824 25.376 1 49.06 ? C27 X3R 1101 A 1 HETATM 26 O O28 X3R . . . B 2 -16.428 8.919 24.681 1 49.57 ? O28 X3R 1101 A 1 HETATM 27 C C29 X3R . . . B 2 -15.748 9.965 25.176 1 52.07 ? C29 X3R 1101 A 1 HETATM 28 O O30 X3R . . . B 2 -14.747 10.401 24.626 1 53.33 ? O30 X3R 1101 A 1 HETATM 29 C C31 X3R . . . B 2 -17.226 8.728 27.883 1 53.51 ? C31 X3R 1101 A 1 HETATM 30 F F32 X3R . . . B 2 -16.449 7.603 27.572 1 56.33 ? F32 X3R 1101 A 1 HETATM 31 F F33 X3R . . . B 2 -16.608 9.412 28.929 1 56.28 ? F33 X3R 1101 A 1 HETATM 32 F F34 X3R . . . B 2 -18.453 8.312 28.372 1 52.65 ? F34 X3R 1101 A 1 HETATM 33 H H9 X3R . . . B 2 -19.951 15.14 33.256 1 50.13 ? H9 X3R 1101 A 1 HETATM 34 H H26 X3R . . . B 2 -18.308 10.296 26.851 1 49.5 ? H26 X3R 1101 A 1 # _model_server_stats.io_time_ms 120 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 43 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 34 #