data_8EXV # _model_server_result.job_id QWeenpS40IBsoVnfTVAJ_Q _model_server_result.datetime_utc '2024-11-25 00:24:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8exv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 8EXV # _exptl.entry_id 8EXV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 407.371 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~2~-{(4S,11aP)-2-[(4S)-4-(difluoromethyl)-2-oxo-1,3-oxazolidin-3-yl]-5,6-dihydroimidazo[1,2-d][1,4]benzoxazepin-9-yl}-L-alaninamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8EXV _cell.length_a 58.72 _cell.length_b 133.72 _cell.length_c 141.74 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EXV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H19 F2 N5 O4' _chem_comp.formula_weight 407.371 _chem_comp.id X3N _chem_comp.mon_nstd_flag . _chem_comp.name N~2~-{(4S,11aP)-2-[(4S)-4-(difluoromethyl)-2-oxo-1,3-oxazolidin-3-yl]-5,6-dihydroimidazo[1,2-d][1,4]benzoxazepin-9-yl}-L-alaninamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O28 C27 X3N doub 376 n n O26 C27 X3N sing 377 n n O26 C25 X3N sing 378 n n C27 N22 X3N sing 379 n n C25 C23 X3N sing 380 n n N22 C23 X3N sing 381 n n N22 C20 X3N sing 382 n n C23 C29 X3N sing 383 n n C21 C20 X3N doub 384 n y C21 N17 X3N sing 385 n y C20 N19 X3N sing 386 n y N17 C16 X3N sing 387 n n N17 C18 X3N sing 388 n y C16 C15 X3N sing 389 n n N19 C18 X3N doub 390 n y F31 C29 X3N sing 391 n n C29 F30 X3N sing 392 n n C15 O14 X3N sing 393 n n C18 C11 X3N sing 394 n n C11 C10 X3N doub 395 n y C11 C12 X3N sing 396 n y O14 C12 X3N sing 397 n n C10 C9 X3N sing 398 n y C12 C13 X3N doub 399 n y C9 C8 X3N doub 400 n y C13 C8 X3N sing 401 n y N6 C4 X3N sing 402 n n C8 N7 X3N sing 403 n n C4 O5 X3N doub 404 n n C4 C2 X3N sing 405 n n N7 C2 X3N sing 406 n n C2 C1 X3N sing 407 n n C9 H1 X3N sing 408 n n C10 H2 X3N sing 409 n n C13 H4 X3N sing 410 n n C1 H5 X3N sing 411 n n C1 H6 X3N sing 412 n n C1 H7 X3N sing 413 n n C2 H3 X3N sing 414 n n N6 H8 X3N sing 415 n n N6 H9 X3N sing 416 n n N7 H10 X3N sing 417 n n C15 H11 X3N sing 418 n n C15 H12 X3N sing 419 n n C16 H13 X3N sing 420 n n C16 H14 X3N sing 421 n n C21 H15 X3N sing 422 n n C23 H24 X3N sing 423 n n C25 H16 X3N sing 424 n n C25 H17 X3N sing 425 n n C29 H18 X3N sing 426 n n # _atom_sites.entry_id 8EXV _atom_sites.fract_transf_matrix[1][1] 0.01703 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007478 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007055 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 X3N A 1 1101 1 X3N DRG . C 3 HOH A 1 1201 110 HOH HOH . C 3 HOH A 2 1202 137 HOH HOH . C 3 HOH A 3 1203 119 HOH HOH . C 3 HOH A 4 1204 30 HOH HOH . C 3 HOH A 5 1205 12 HOH HOH . C 3 HOH A 6 1206 4 HOH HOH . C 3 HOH A 7 1207 27 HOH HOH . C 3 HOH A 8 1208 7 HOH HOH . C 3 HOH A 9 1209 73 HOH HOH . C 3 HOH A 10 1210 49 HOH HOH . C 3 HOH A 11 1211 105 HOH HOH . C 3 HOH A 12 1212 28 HOH HOH . C 3 HOH A 13 1213 150 HOH HOH . C 3 HOH A 14 1214 84 HOH HOH . C 3 HOH A 15 1215 89 HOH HOH . C 3 HOH A 16 1216 17 HOH HOH . C 3 HOH A 17 1217 26 HOH HOH . C 3 HOH A 18 1218 13 HOH HOH . C 3 HOH A 19 1219 41 HOH HOH . C 3 HOH A 20 1220 3 HOH HOH . C 3 HOH A 21 1221 34 HOH HOH . C 3 HOH A 22 1222 76 HOH HOH . C 3 HOH A 23 1223 104 HOH HOH . C 3 HOH A 24 1224 5 HOH HOH . C 3 HOH A 25 1225 122 HOH HOH . C 3 HOH A 26 1226 121 HOH HOH . C 3 HOH A 27 1227 58 HOH HOH . C 3 HOH A 28 1228 24 HOH HOH . C 3 HOH A 29 1229 92 HOH HOH . C 3 HOH A 30 1230 109 HOH HOH . C 3 HOH A 31 1231 148 HOH HOH . C 3 HOH A 32 1232 71 HOH HOH . C 3 HOH A 33 1233 78 HOH HOH . C 3 HOH A 34 1234 149 HOH HOH . C 3 HOH A 35 1235 16 HOH HOH . C 3 HOH A 36 1236 72 HOH HOH . C 3 HOH A 37 1237 96 HOH HOH . C 3 HOH A 38 1238 147 HOH HOH . C 3 HOH A 39 1239 90 HOH HOH . C 3 HOH A 40 1240 133 HOH HOH . C 3 HOH A 41 1241 56 HOH HOH . C 3 HOH A 42 1242 140 HOH HOH . C 3 HOH A 43 1243 64 HOH HOH . C 3 HOH A 44 1244 2 HOH HOH . C 3 HOH A 45 1245 63 HOH HOH . C 3 HOH A 46 1246 20 HOH HOH . C 3 HOH A 47 1247 32 HOH HOH . C 3 HOH A 48 1248 40 HOH HOH . C 3 HOH A 49 1249 114 HOH HOH . C 3 HOH A 50 1250 113 HOH HOH . C 3 HOH A 51 1251 55 HOH HOH . C 3 HOH A 52 1252 123 HOH HOH . C 3 HOH A 53 1253 136 HOH HOH . C 3 HOH A 54 1254 57 HOH HOH . C 3 HOH A 55 1255 111 HOH HOH . C 3 HOH A 56 1256 108 HOH HOH . C 3 HOH A 57 1257 43 HOH HOH . C 3 HOH A 58 1258 82 HOH HOH . C 3 HOH A 59 1259 10 HOH HOH . C 3 HOH A 60 1260 47 HOH HOH . C 3 HOH A 61 1261 95 HOH HOH . C 3 HOH A 62 1262 101 HOH HOH . C 3 HOH A 63 1263 59 HOH HOH . C 3 HOH A 64 1264 98 HOH HOH . C 3 HOH A 65 1265 21 HOH HOH . C 3 HOH A 66 1266 22 HOH HOH . C 3 HOH A 67 1267 70 HOH HOH . C 3 HOH A 68 1268 60 HOH HOH . C 3 HOH A 69 1269 29 HOH HOH . C 3 HOH A 70 1270 146 HOH HOH . C 3 HOH A 71 1271 145 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 X3N . . . B 2 -20.85 16.341 32.111 1 43.74 ? C4 X3N 1101 A 1 HETATM 2 C C11 X3N . . . B 2 -16.43 14.169 29.646 1 38.75 ? C11 X3N 1101 A 1 HETATM 3 C C8 X3N . . . B 2 -17.786 15.743 31.558 1 41.91 ? C8 X3N 1101 A 1 HETATM 4 C C9 X3N . . . B 2 -18.379 14.587 31.026 1 42.92 ? C9 X3N 1101 A 1 HETATM 5 C C10 X3N . . . B 2 -17.721 13.824 30.066 1 40.95 ? C10 X3N 1101 A 1 HETATM 6 C C12 X3N . . . B 2 -15.841 15.367 30.166 1 40.16 ? C12 X3N 1101 A 1 HETATM 7 C C13 X3N . . . B 2 -16.519 16.124 31.108 1 40.63 ? C13 X3N 1101 A 1 HETATM 8 C C1 X3N . . . B 2 -20.038 17.033 34.369 1 45.28 ? C1 X3N 1101 A 1 HETATM 9 C C2 X3N . . . B 2 -19.741 16.175 33.129 1 47.71 ? C2 X3N 1101 A 1 HETATM 10 O O5 X3N . . . B 2 -21.788 15.564 32.124 1 43.12 ? O5 X3N 1101 A 1 HETATM 11 N N6 X3N . . . B 2 -20.77 17.316 31.178 1 39.02 ? N6 X3N 1101 A 1 HETATM 12 N N7 X3N . . . B 2 -18.415 16.519 32.548 1 44.13 ? N7 X3N 1101 A 1 HETATM 13 O O14 X3N . . . B 2 -14.623 15.798 29.778 1 41.82 ? O14 X3N 1101 A 1 HETATM 14 C C15 X3N . . . B 2 -14.242 15.812 28.406 1 38.07 ? C15 X3N 1101 A 1 HETATM 15 C C16 X3N . . . B 2 -13.609 14.463 28.084 1 36.1 ? C16 X3N 1101 A 1 HETATM 16 N N17 X3N . . . B 2 -14.618 13.432 27.896 1 36.32 ? N17 X3N 1101 A 1 HETATM 17 C C18 X3N . . . B 2 -15.818 13.303 28.594 1 39.82 ? C18 X3N 1101 A 1 HETATM 18 N N19 X3N . . . B 2 -16.418 12.258 28.093 1 42.42 ? N19 X3N 1101 A 1 HETATM 19 C C20 X3N . . . B 2 -15.692 11.644 27.163 1 42.31 ? C20 X3N 1101 A 1 HETATM 20 C C21 X3N . . . B 2 -14.567 12.391 26.993 1 38.5 ? C21 X3N 1101 A 1 HETATM 21 N N22 X3N . . . B 2 -16.164 10.485 26.506 1 47.7 ? N22 X3N 1101 A 1 HETATM 22 C C23 X3N . . . B 2 -17.438 9.825 26.874 1 51.19 ? C23 X3N 1101 A 1 HETATM 23 C C25 X3N . . . B 2 -17.691 8.822 25.736 1 46.77 ? C25 X3N 1101 A 1 HETATM 24 O O26 X3N . . . B 2 -16.407 8.78 25.064 1 48.19 ? O26 X3N 1101 A 1 HETATM 25 C C27 X3N . . . B 2 -15.651 9.815 25.448 1 46.87 ? C27 X3N 1101 A 1 HETATM 26 O O28 X3N . . . B 2 -14.616 10.083 24.877 1 43.59 ? O28 X3N 1101 A 1 HETATM 27 C C29 X3N . . . B 2 -17.314 9.116 28.233 1 55.82 ? C29 X3N 1101 A 1 HETATM 28 F F30 X3N . . . B 2 -18.552 8.602 28.655 1 54.9 ? F30 X3N 1101 A 1 HETATM 29 F F31 X3N . . . B 2 -16.344 8.114 28.129 1 59.36 ? F31 X3N 1101 A 1 HETATM 30 H H3 X3N . . . B 2 -19.74 15.134 33.448 1 48.67 ? H3 X3N 1101 A 1 HETATM 31 H H24 X3N . . . B 2 -18.247 10.557 26.905 1 51.3 ? H24 X3N 1101 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #