data_8EY1
#
_model_server_result.job_id            lV3NLdrQgMvRNxGHUS1gtg 
_model_server_result.datetime_utc      '2024-12-26 14:39:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ey1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":700}' 
#
_entry.id    8EY1 
#
_exptl.entry_id    8EY1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              297.39 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'N-3-OXO-DODECANOYL-L-HOMOSERINE LACTONE' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.57 
_cell.angle_gamma         90 
_cell.entry_id            8EY1 
_cell.length_a            225.544 
_cell.length_b            83.75 
_cell.length_c            270.943 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8EY1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
? monomeric 1 author_defined_assembly 5 
? monomeric 1 author_defined_assembly 6 
? monomeric 1 author_defined_assembly 7 
? monomeric 1 author_defined_assembly 8 
? monomeric 1 author_defined_assembly 9 
? monomeric 1 author_defined_assembly 10 
? monomeric 1 author_defined_assembly 11 
? monomeric 1 author_defined_assembly 12 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A 1 1 
B 2 1 
C 3 1 
D,M 4 1 
E 5 1 
F,N 6 1 
G 7 1 
H,O 8 1 
I 9 1 
J,P 10 1 
K 11 1 
L,Q 12 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
#
_chem_comp.formula           'C16 H27 N O4' 
_chem_comp.formula_weight    297.39 
_chem_comp.id                OHN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'N-3-OXO-DODECANOYL-L-HOMOSERINE LACTONE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C21 C20 OHN sing 235 n n 
C20 C19 OHN sing 236 n n 
C19 C18 OHN sing 237 n n 
C18 C17 OHN sing 238 n n 
C17 C16 OHN sing 239 n n 
C16 C15 OHN sing 240 n n 
C15 C14 OHN sing 241 n n 
C14 C13 OHN sing 242 n n 
C13 C11 OHN sing 243 n n 
C11 O12 OHN doub 244 n n 
C11 C10 OHN sing 245 n n 
C10 C8 OHN sing 246 n n 
C8 O9 OHN doub 247 n n 
C8 N7 OHN sing 248 n n 
N7 C1 OHN sing 249 n n 
C1 C5 OHN sing 250 n n 
C5 C4 OHN sing 251 n n 
C1 C2 OHN sing 252 n n 
C2 O6 OHN doub 253 n n 
C4 OAP OHN sing 254 n n 
C2 OAP OHN sing 255 n n 
C21 H211 OHN sing 256 n n 
C21 H212 OHN sing 257 n n 
C21 H213 OHN sing 258 n n 
C20 H201 OHN sing 259 n n 
C20 H202 OHN sing 260 n n 
C19 H191 OHN sing 261 n n 
C19 H192 OHN sing 262 n n 
C18 H181 OHN sing 263 n n 
C18 H182 OHN sing 264 n n 
C17 H171 OHN sing 265 n n 
C17 H172 OHN sing 266 n n 
C16 H161 OHN sing 267 n n 
C16 H162 OHN sing 268 n n 
C15 H151 OHN sing 269 n n 
C15 H152 OHN sing 270 n n 
C14 H141 OHN sing 271 n n 
C14 H142 OHN sing 272 n n 
C13 H131 OHN sing 273 n n 
C13 H132 OHN sing 274 n n 
C10 H101 OHN sing 275 n n 
C10 H102 OHN sing 276 n n 
N7 H7 OHN sing 277 n n 
C1 H1 OHN sing 278 n n 
C5 H5C1 OHN sing 279 n n 
C5 H5C2 OHN sing 280 n n 
C4 H4C1 OHN sing 281 n n 
C4 H4C2 OHN sing 282 n n 
#
_atom_sites.entry_id                     8EY1 
_atom_sites.fract_transf_matrix[1][1]    0.004434 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001576 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01194 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003917 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 2 OHN D 1 700 700 OHN WXJ . 
N 2 OHN F 1 700 700 OHN WXJ . 
O 2 OHN H 1 700 700 OHN WXJ . 
P 2 OHN J 1 700 700 OHN WXJ . 
Q 2 OHN L 1 700 700 OHN WXJ . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C21 OHN . . . M 2 -49.974 30.586 -162.943 1 65.44 ? C21 OHN 700 D 1 
HETATM 2 C C20 OHN . . . M 2 -48.671 29.807 -162.769 1 66.4 ? C20 OHN 700 D 1 
HETATM 3 C C19 OHN . . . M 2 -48.188 29.162 -164.068 1 69.31 ? C19 OHN 700 D 1 
HETATM 4 C C18 OHN . . . M 2 -48.967 27.894 -164.416 1 70.16 ? C18 OHN 700 D 1 
HETATM 5 C C17 OHN . . . M 2 -48.047 26.73 -164.778 1 74.65 ? C17 OHN 700 D 1 
HETATM 6 C C16 OHN . . . M 2 -48.723 25.374 -164.582 1 72.96 ? C16 OHN 700 D 1 
HETATM 7 C C15 OHN . . . M 2 -49.165 24.738 -165.898 1 67 ? C15 OHN 700 D 1 
HETATM 8 C C14 OHN . . . M 2 -49.956 23.451 -165.674 1 64.25 ? C14 OHN 700 D 1 
HETATM 9 C C13 OHN . . . M 2 -49.88 22.488 -166.858 1 62.73 ? C13 OHN 700 D 1 
HETATM 10 C C11 OHN . . . M 2 -50.124 21.046 -166.42 1 58.84 ? C11 OHN 700 D 1 
HETATM 11 O O12 OHN . . . M 2 -49.322 20.76 -165.602 1 68.83 ? O12 OHN 700 D 1 
HETATM 12 C C10 OHN . . . M 2 -50.016 20.083 -167.608 1 60.31 ? C10 OHN 700 D 1 
HETATM 13 C C8 OHN . . . M 2 -49.623 18.673 -167.16 1 66.47 ? C8 OHN 700 D 1 
HETATM 14 O O9 OHN . . . M 2 -50.484 17.924 -166.828 1 68.83 ? O9 OHN 700 D 1 
HETATM 15 N N7 OHN . . . M 2 -48.204 18.319 -167.153 1 65.33 ? N7 OHN 700 D 1 
HETATM 16 C C1 OHN . . . M 2 -47.527 16.98 -166.736 1 65.49 ? C1 OHN 700 D 1 
HETATM 17 C C5 OHN . . . M 2 -46.86 17.156 -165.309 1 63.72 ? C5 OHN 700 D 1 
HETATM 18 C C4 OHN . . . M 2 -47.356 15.929 -164.465 1 65.85 ? C4 OHN 700 D 1 
HETATM 19 C C2 OHN . . . M 2 -48.304 15.945 -166.66 1 68.57 ? C2 OHN 700 D 1 
HETATM 20 O O6 OHN . . . M 2 -47.824 15.039 -167.246 1 71.3 ? O6 OHN 700 D 1 
HETATM 21 O OAP OHN . . . M 2 -48.459 15.558 -165.031 1 68.87 ? OAP OHN 700 D 1 
#
_model_server_stats.io_time_ms              107 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    49 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           21 
#