data_8EY1 # _model_server_result.job_id gk6JLI5SvpmTC9-7SIsBiQ _model_server_result.datetime_utc '2024-12-26 14:48:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ey1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":700}' # _entry.id 8EY1 # _exptl.entry_id 8EY1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 297.39 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-3-OXO-DODECANOYL-L-HOMOSERINE LACTONE' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.57 _cell.angle_gamma 90 _cell.entry_id 8EY1 _cell.length_a 225.544 _cell.length_b 83.75 _cell.length_c 270.943 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EY1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 ? monomeric 1 author_defined_assembly 5 ? monomeric 1 author_defined_assembly 6 ? monomeric 1 author_defined_assembly 7 ? monomeric 1 author_defined_assembly 8 ? monomeric 1 author_defined_assembly 9 ? monomeric 1 author_defined_assembly 10 ? monomeric 1 author_defined_assembly 11 ? monomeric 1 author_defined_assembly 12 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A 1 1 B 2 1 C 3 1 D,M 4 1 E 5 1 F,N 6 1 G 7 1 H,O 8 1 I 9 1 J,P 10 1 K 11 1 L,Q 12 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N # _chem_comp.formula 'C16 H27 N O4' _chem_comp.formula_weight 297.39 _chem_comp.id OHN _chem_comp.mon_nstd_flag . _chem_comp.name 'N-3-OXO-DODECANOYL-L-HOMOSERINE LACTONE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C20 OHN sing 235 n n C20 C19 OHN sing 236 n n C19 C18 OHN sing 237 n n C18 C17 OHN sing 238 n n C17 C16 OHN sing 239 n n C16 C15 OHN sing 240 n n C15 C14 OHN sing 241 n n C14 C13 OHN sing 242 n n C13 C11 OHN sing 243 n n C11 O12 OHN doub 244 n n C11 C10 OHN sing 245 n n C10 C8 OHN sing 246 n n C8 O9 OHN doub 247 n n C8 N7 OHN sing 248 n n N7 C1 OHN sing 249 n n C1 C5 OHN sing 250 n n C5 C4 OHN sing 251 n n C1 C2 OHN sing 252 n n C2 O6 OHN doub 253 n n C4 OAP OHN sing 254 n n C2 OAP OHN sing 255 n n C21 H211 OHN sing 256 n n C21 H212 OHN sing 257 n n C21 H213 OHN sing 258 n n C20 H201 OHN sing 259 n n C20 H202 OHN sing 260 n n C19 H191 OHN sing 261 n n C19 H192 OHN sing 262 n n C18 H181 OHN sing 263 n n C18 H182 OHN sing 264 n n C17 H171 OHN sing 265 n n C17 H172 OHN sing 266 n n C16 H161 OHN sing 267 n n C16 H162 OHN sing 268 n n C15 H151 OHN sing 269 n n C15 H152 OHN sing 270 n n C14 H141 OHN sing 271 n n C14 H142 OHN sing 272 n n C13 H131 OHN sing 273 n n C13 H132 OHN sing 274 n n C10 H101 OHN sing 275 n n C10 H102 OHN sing 276 n n N7 H7 OHN sing 277 n n C1 H1 OHN sing 278 n n C5 H5C1 OHN sing 279 n n C5 H5C2 OHN sing 280 n n C4 H4C1 OHN sing 281 n n C4 H4C2 OHN sing 282 n n # _atom_sites.entry_id 8EY1 _atom_sites.fract_transf_matrix[1][1] 0.004434 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001576 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01194 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003917 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 2 OHN D 1 700 700 OHN WXJ . N 2 OHN F 1 700 700 OHN WXJ . O 2 OHN H 1 700 700 OHN WXJ . P 2 OHN J 1 700 700 OHN WXJ . Q 2 OHN L 1 700 700 OHN WXJ . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C21 OHN . . . N 2 -24.98 71.915 -50.006 1 97.03 ? C21 OHN 700 F 1 HETATM 2 C C20 OHN . . . N 2 -26.362 71.29 -49.832 1 97.99 ? C20 OHN 700 F 1 HETATM 3 C C19 OHN . . . N 2 -26.515 70.569 -48.494 1 100.9 ? C19 OHN 700 F 1 HETATM 4 C C18 OHN . . . N 2 -25.844 69.198 -48.496 1 101.75 ? C18 OHN 700 F 1 HETATM 5 C C17 OHN . . . N 2 -26.702 68.135 -47.815 1 106.24 ? C17 OHN 700 F 1 HETATM 6 C C16 OHN . . . N 2 -26.235 66.72 -48.145 1 104.55 ? C16 OHN 700 F 1 HETATM 7 C C15 OHN . . . N 2 -25.227 66.193 -47.128 1 98.59 ? C15 OHN 700 F 1 HETATM 8 C C14 OHN . . . N 2 -24.785 64.768 -47.45 1 95.84 ? C14 OHN 700 F 1 HETATM 9 C C13 OHN . . . N 2 -24.797 63.872 -46.217 1 94.32 ? C13 OHN 700 F 1 HETATM 10 C C11 OHN . . . N 2 -24.849 62.387 -46.572 1 90.43 ? C11 OHN 700 F 1 HETATM 11 O O12 OHN . . . N 2 -25.883 62.14 -47.086 1 100.42 ? O12 OHN 700 F 1 HETATM 12 C C10 OHN . . . N 2 -24.698 61.582 -45.283 1 91.9 ? C10 OHN 700 F 1 HETATM 13 C C8 OHN . . . N 2 -25.158 60.127 -45.38 1 98.06 ? C8 OHN 700 F 1 HETATM 14 O O9 OHN . . . N 2 -24.421 59.284 -44.995 1 100.42 ? O9 OHN 700 F 1 HETATM 15 N N7 OHN . . . N 2 -26.474 59.811 -45.926 1 96.92 ? N7 OHN 700 F 1 HETATM 16 C C1 OHN . . . N 2 -27.057 58.379 -46.06 1 97.08 ? C1 OHN 700 F 1 HETATM 17 C C5 OHN . . . N 2 -28.322 58.396 -47.013 1 95.31 ? C5 OHN 700 F 1 HETATM 18 C C4 OHN . . . N 2 -27.874 57.682 -48.339 1 97.44 ? C4 OHN 700 F 1 HETATM 19 C C2 OHN . . . N 2 -26.245 57.545 -46.614 1 100.16 ? C2 OHN 700 F 1 HETATM 20 O O6 OHN . . . N 2 -26.431 56.464 -46.18 1 102.89 ? O6 OHN 700 F 1 HETATM 21 O OAP OHN . . . N 2 -26.587 57.59 -48.256 1 100.46 ? OAP OHN 700 F 1 # _model_server_stats.io_time_ms 82 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #