data_8EYA
#
_model_server_result.job_id            5b5WybajKUx_q1-EBTgV6A 
_model_server_result.datetime_utc      '2024-11-28 16:18:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8eya 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":402}' 
#
_entry.id    8EYA 
#
_exptl.entry_id    8EYA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8EYA 
_cell.length_a            88.833 
_cell.length_b            88.833 
_cell.length_c            197.456 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8EYA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,H,I,J,K,O,Q 1 1 
B,D,L,M,N,P,R 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C GLU 7 D GLU 1006 1_555 C N PTR 8 D PTR 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 C C PTR 8 D PTR 1007 1_555 C N PTR 9 D PTR 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale3 C C PTR 9 D PTR 1008 1_555 C N LYS 10 D LYS 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale4 D C GLU 7 E GLU 1006 1_555 D N PTR 8 E PTR 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale5 D C PTR 8 E PTR 1007 1_555 D N PTR 9 E PTR 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale6 D C PTR 9 E PTR 1008 1_555 D N LYS 10 E LYS 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
metalc ? metalc1 A OE1 GLU 159 A GLU 159 1_555 K NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc2 A OE1 GLU 161 A GLU 161 1_555 K NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? 
metalc ? metalc3 A OG1 THR 165 A THR 165 1_555 J NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc4 A OE2 GLU 167 A GLU 167 1_555 J NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc5 K NA NA . A NA 407 1_555 O O HOH . A HOH 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? 
metalc ? metalc6 B OE2 GLU 129 B GLU 129 1_555 N NA NA . B NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc7 B O ILE 145 B ILE 145 1_555 N NA NA . B NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     8EYA 
_atom_sites.fract_transf_matrix[1][1]    0.011257 
_atom_sites.fract_transf_matrix[1][2]    0.006499 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012999 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005064 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 TRS A 1 401 401 TRS TRS . 
F 4 EDO A 1 402 3 EDO EDO . 
G 5 CL A 1 403 1 CL CL . 
H 5 CL A 1 404 7 CL CL . 
I 5 CL A 1 405 8 CL CL . 
J 6 NA A 1 406 1 NA NA . 
K 6 NA A 1 407 2 NA NA . 
L 4 EDO B 1 401 2 EDO EDO . 
M 5 CL B 1 402 2 CL CL . 
N 6 NA B 1 403 3 NA NA . 
O 7 HOH A 1 501 272 HOH HOH . 
O 7 HOH A 2 502 251 HOH HOH . 
O 7 HOH A 3 503 40 HOH HOH . 
O 7 HOH A 4 504 3 HOH HOH . 
O 7 HOH A 5 505 68 HOH HOH . 
O 7 HOH A 6 506 236 HOH HOH . 
O 7 HOH A 7 507 14 HOH HOH . 
O 7 HOH A 8 508 164 HOH HOH . 
O 7 HOH A 9 509 73 HOH HOH . 
O 7 HOH A 10 510 261 HOH HOH . 
O 7 HOH A 11 511 182 HOH HOH . 
O 7 HOH A 12 512 170 HOH HOH . 
O 7 HOH A 13 513 58 HOH HOH . 
O 7 HOH A 14 514 190 HOH HOH . 
O 7 HOH A 15 515 16 HOH HOH . 
O 7 HOH A 16 516 105 HOH HOH . 
O 7 HOH A 17 517 9 HOH HOH . 
O 7 HOH A 18 518 61 HOH HOH . 
O 7 HOH A 19 519 23 HOH HOH . 
O 7 HOH A 20 520 27 HOH HOH . 
O 7 HOH A 21 521 107 HOH HOH . 
O 7 HOH A 22 522 26 HOH HOH . 
O 7 HOH A 23 523 166 HOH HOH . 
O 7 HOH A 24 524 59 HOH HOH . 
O 7 HOH A 25 525 254 HOH HOH . 
O 7 HOH A 26 526 109 HOH HOH . 
O 7 HOH A 27 527 83 HOH HOH . 
O 7 HOH A 28 528 71 HOH HOH . 
O 7 HOH A 29 529 241 HOH HOH . 
O 7 HOH A 30 530 101 HOH HOH . 
O 7 HOH A 31 531 21 HOH HOH . 
O 7 HOH A 32 532 30 HOH HOH . 
O 7 HOH A 33 533 87 HOH HOH . 
O 7 HOH A 34 534 70 HOH HOH . 
O 7 HOH A 35 535 67 HOH HOH . 
O 7 HOH A 36 536 84 HOH HOH . 
O 7 HOH A 37 537 42 HOH HOH . 
O 7 HOH A 38 538 10 HOH HOH . 
O 7 HOH A 39 539 114 HOH HOH . 
O 7 HOH A 40 540 85 HOH HOH . 
O 7 HOH A 41 541 97 HOH HOH . 
O 7 HOH A 42 542 184 HOH HOH . 
O 7 HOH A 43 543 113 HOH HOH . 
O 7 HOH A 44 544 275 HOH HOH . 
O 7 HOH A 45 545 38 HOH HOH . 
O 7 HOH A 46 546 228 HOH HOH . 
O 7 HOH A 47 547 253 HOH HOH . 
O 7 HOH A 48 548 2 HOH HOH . 
O 7 HOH A 49 549 7 HOH HOH . 
O 7 HOH A 50 550 181 HOH HOH . 
O 7 HOH A 51 551 162 HOH HOH . 
O 7 HOH A 52 552 60 HOH HOH . 
O 7 HOH A 53 553 64 HOH HOH . 
O 7 HOH A 54 554 22 HOH HOH . 
O 7 HOH A 55 555 32 HOH HOH . 
O 7 HOH A 56 556 39 HOH HOH . 
O 7 HOH A 57 557 69 HOH HOH . 
O 7 HOH A 58 558 112 HOH HOH . 
O 7 HOH A 59 559 106 HOH HOH . 
O 7 HOH A 60 560 229 HOH HOH . 
O 7 HOH A 61 561 91 HOH HOH . 
O 7 HOH A 62 562 191 HOH HOH . 
O 7 HOH A 63 563 19 HOH HOH . 
O 7 HOH A 64 564 192 HOH HOH . 
O 7 HOH A 65 565 183 HOH HOH . 
O 7 HOH A 66 566 186 HOH HOH . 
O 7 HOH A 67 567 11 HOH HOH . 
O 7 HOH A 68 568 169 HOH HOH . 
O 7 HOH A 69 569 20 HOH HOH . 
O 7 HOH A 70 570 117 HOH HOH . 
O 7 HOH A 71 571 29 HOH HOH . 
O 7 HOH A 72 572 24 HOH HOH . 
O 7 HOH A 73 573 75 HOH HOH . 
O 7 HOH A 74 574 116 HOH HOH . 
O 7 HOH A 75 575 15 HOH HOH . 
O 7 HOH A 76 576 74 HOH HOH . 
O 7 HOH A 77 577 118 HOH HOH . 
O 7 HOH A 78 578 94 HOH HOH . 
O 7 HOH A 79 579 209 HOH HOH . 
O 7 HOH A 80 580 82 HOH HOH . 
O 7 HOH A 81 581 72 HOH HOH . 
O 7 HOH A 82 582 270 HOH HOH . 
O 7 HOH A 83 583 214 HOH HOH . 
O 7 HOH A 84 584 43 HOH HOH . 
O 7 HOH A 85 585 226 HOH HOH . 
O 7 HOH A 86 586 252 HOH HOH . 
O 7 HOH A 87 587 79 HOH HOH . 
O 7 HOH A 88 588 100 HOH HOH . 
O 7 HOH A 89 589 63 HOH HOH . 
O 7 HOH A 90 590 115 HOH HOH . 
O 7 HOH A 91 591 188 HOH HOH . 
O 7 HOH A 92 592 210 HOH HOH . 
O 7 HOH A 93 593 259 HOH HOH . 
O 7 HOH A 94 594 189 HOH HOH . 
O 7 HOH A 95 595 80 HOH HOH . 
P 7 HOH B 1 501 150 HOH HOH . 
P 7 HOH B 2 502 45 HOH HOH . 
P 7 HOH B 3 503 266 HOH HOH . 
P 7 HOH B 4 504 195 HOH HOH . 
P 7 HOH B 5 505 257 HOH HOH . 
P 7 HOH B 6 506 51 HOH HOH . 
P 7 HOH B 7 507 131 HOH HOH . 
P 7 HOH B 8 508 128 HOH HOH . 
P 7 HOH B 9 509 130 HOH HOH . 
P 7 HOH B 10 510 173 HOH HOH . 
P 7 HOH B 11 511 77 HOH HOH . 
P 7 HOH B 12 512 136 HOH HOH . 
P 7 HOH B 13 513 146 HOH HOH . 
P 7 HOH B 14 514 155 HOH HOH . 
P 7 HOH B 15 515 233 HOH HOH . 
P 7 HOH B 16 516 37 HOH HOH . 
P 7 HOH B 17 517 36 HOH HOH . 
P 7 HOH B 18 518 141 HOH HOH . 
P 7 HOH B 19 519 46 HOH HOH . 
P 7 HOH B 20 520 55 HOH HOH . 
P 7 HOH B 21 521 206 HOH HOH . 
P 7 HOH B 22 522 76 HOH HOH . 
P 7 HOH B 23 523 145 HOH HOH . 
P 7 HOH B 24 524 274 HOH HOH . 
P 7 HOH B 25 525 56 HOH HOH . 
P 7 HOH B 26 526 276 HOH HOH . 
P 7 HOH B 27 527 153 HOH HOH . 
P 7 HOH B 28 528 135 HOH HOH . 
P 7 HOH B 29 529 41 HOH HOH . 
P 7 HOH B 30 530 221 HOH HOH . 
P 7 HOH B 31 531 193 HOH HOH . 
P 7 HOH B 32 532 154 HOH HOH . 
P 7 HOH B 33 533 200 HOH HOH . 
P 7 HOH B 34 534 78 HOH HOH . 
P 7 HOH B 35 535 249 HOH HOH . 
P 7 HOH B 36 536 216 HOH HOH . 
P 7 HOH B 37 537 66 HOH HOH . 
P 7 HOH B 38 538 144 HOH HOH . 
P 7 HOH B 39 539 62 HOH HOH . 
P 7 HOH B 40 540 12 HOH HOH . 
P 7 HOH B 41 541 245 HOH HOH . 
P 7 HOH B 42 542 49 HOH HOH . 
P 7 HOH B 43 543 149 HOH HOH . 
P 7 HOH B 44 544 158 HOH HOH . 
P 7 HOH B 45 545 255 HOH HOH . 
P 7 HOH B 46 546 122 HOH HOH . 
P 7 HOH B 47 547 147 HOH HOH . 
P 7 HOH B 48 548 223 HOH HOH . 
P 7 HOH B 49 549 132 HOH HOH . 
P 7 HOH B 50 550 50 HOH HOH . 
P 7 HOH B 51 551 142 HOH HOH . 
P 7 HOH B 52 552 48 HOH HOH . 
P 7 HOH B 53 553 198 HOH HOH . 
P 7 HOH B 54 554 65 HOH HOH . 
P 7 HOH B 55 555 163 HOH HOH . 
P 7 HOH B 56 556 201 HOH HOH . 
P 7 HOH B 57 557 121 HOH HOH . 
P 7 HOH B 58 558 202 HOH HOH . 
P 7 HOH B 59 559 217 HOH HOH . 
P 7 HOH B 60 560 196 HOH HOH . 
P 7 HOH B 61 561 151 HOH HOH . 
P 7 HOH B 62 562 140 HOH HOH . 
P 7 HOH B 63 563 123 HOH HOH . 
P 7 HOH B 64 564 222 HOH HOH . 
P 7 HOH B 65 565 138 HOH HOH . 
P 7 HOH B 66 566 156 HOH HOH . 
P 7 HOH B 67 567 54 HOH HOH . 
P 7 HOH B 68 568 242 HOH HOH . 
P 7 HOH B 69 569 248 HOH HOH . 
P 7 HOH B 70 570 244 HOH HOH . 
P 7 HOH B 71 571 111 HOH HOH . 
P 7 HOH B 72 572 47 HOH HOH . 
P 7 HOH B 73 573 219 HOH HOH . 
P 7 HOH B 74 574 256 HOH HOH . 
P 7 HOH B 75 575 35 HOH HOH . 
Q 7 HOH D 1 1101 234 HOH HOH . 
Q 7 HOH D 2 1102 33 HOH HOH . 
Q 7 HOH D 3 1103 161 HOH HOH . 
Q 7 HOH D 4 1104 178 HOH HOH . 
R 7 HOH E 1 1101 34 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . F 4 22.98 -21.638 9.214 1 56.95 ? C1 EDO 402 A 1 
HETATM 2 O O1 EDO . . . F 4 22.879 -20.305 9.722 1 60.86 ? O1 EDO 402 A 1 
HETATM 3 C C2 EDO . . . F 4 22.921 -22.592 10.397 1 59.29 ? C2 EDO 402 A 1 
HETATM 4 O O2 EDO . . . F 4 22.698 -23.918 9.92 1 57.11 ? O2 EDO 402 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#