data_8EYA # _model_server_result.job_id 2yBxiBJtA0TKjQwW2nSF8Q _model_server_result.datetime_utc '2024-11-13 09:58:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8eya # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":406}' # _entry.id 8EYA # _exptl.entry_id 8EYA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8EYA _cell.length_a 88.833 _cell.length_b 88.833 _cell.length_c 197.456 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EYA _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H,I,J,K,O,Q 1 1 B,D,L,M,N,P,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 J N N ? 6 K N N ? 6 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C GLU 7 D GLU 1006 1_555 C N PTR 8 D PTR 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 C C PTR 8 D PTR 1007 1_555 C N PTR 9 D PTR 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 C C PTR 9 D PTR 1008 1_555 C N LYS 10 D LYS 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 D C GLU 7 E GLU 1006 1_555 D N PTR 8 E PTR 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 D C PTR 8 E PTR 1007 1_555 D N PTR 9 E PTR 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 D C PTR 9 E PTR 1008 1_555 D N LYS 10 E LYS 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A OE1 GLU 159 A GLU 159 1_555 K NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc2 A OE1 GLU 161 A GLU 161 1_555 K NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc3 A OG1 THR 165 A THR 165 1_555 J NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc4 A OE2 GLU 167 A GLU 167 1_555 J NA NA . A NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc5 K NA NA . A NA 407 1_555 O O HOH . A HOH 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc6 B OE2 GLU 129 B GLU 129 1_555 N NA NA . B NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc7 B O ILE 145 B ILE 145 1_555 N NA NA . B NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8EYA _atom_sites.fract_transf_matrix[1][1] 0.011257 _atom_sites.fract_transf_matrix[1][2] 0.006499 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012999 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005064 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 TRS A 1 401 401 TRS TRS . F 4 EDO A 1 402 3 EDO EDO . G 5 CL A 1 403 1 CL CL . H 5 CL A 1 404 7 CL CL . I 5 CL A 1 405 8 CL CL . J 6 NA A 1 406 1 NA NA . K 6 NA A 1 407 2 NA NA . L 4 EDO B 1 401 2 EDO EDO . M 5 CL B 1 402 2 CL CL . N 6 NA B 1 403 3 NA NA . O 7 HOH A 1 501 272 HOH HOH . O 7 HOH A 2 502 251 HOH HOH . O 7 HOH A 3 503 40 HOH HOH . O 7 HOH A 4 504 3 HOH HOH . O 7 HOH A 5 505 68 HOH HOH . O 7 HOH A 6 506 236 HOH HOH . O 7 HOH A 7 507 14 HOH HOH . O 7 HOH A 8 508 164 HOH HOH . O 7 HOH A 9 509 73 HOH HOH . O 7 HOH A 10 510 261 HOH HOH . O 7 HOH A 11 511 182 HOH HOH . O 7 HOH A 12 512 170 HOH HOH . O 7 HOH A 13 513 58 HOH HOH . O 7 HOH A 14 514 190 HOH HOH . O 7 HOH A 15 515 16 HOH HOH . O 7 HOH A 16 516 105 HOH HOH . O 7 HOH A 17 517 9 HOH HOH . O 7 HOH A 18 518 61 HOH HOH . O 7 HOH A 19 519 23 HOH HOH . O 7 HOH A 20 520 27 HOH HOH . O 7 HOH A 21 521 107 HOH HOH . O 7 HOH A 22 522 26 HOH HOH . O 7 HOH A 23 523 166 HOH HOH . O 7 HOH A 24 524 59 HOH HOH . O 7 HOH A 25 525 254 HOH HOH . O 7 HOH A 26 526 109 HOH HOH . O 7 HOH A 27 527 83 HOH HOH . O 7 HOH A 28 528 71 HOH HOH . O 7 HOH A 29 529 241 HOH HOH . O 7 HOH A 30 530 101 HOH HOH . O 7 HOH A 31 531 21 HOH HOH . O 7 HOH A 32 532 30 HOH HOH . O 7 HOH A 33 533 87 HOH HOH . O 7 HOH A 34 534 70 HOH HOH . O 7 HOH A 35 535 67 HOH HOH . O 7 HOH A 36 536 84 HOH HOH . O 7 HOH A 37 537 42 HOH HOH . O 7 HOH A 38 538 10 HOH HOH . O 7 HOH A 39 539 114 HOH HOH . O 7 HOH A 40 540 85 HOH HOH . O 7 HOH A 41 541 97 HOH HOH . O 7 HOH A 42 542 184 HOH HOH . O 7 HOH A 43 543 113 HOH HOH . O 7 HOH A 44 544 275 HOH HOH . O 7 HOH A 45 545 38 HOH HOH . O 7 HOH A 46 546 228 HOH HOH . O 7 HOH A 47 547 253 HOH HOH . O 7 HOH A 48 548 2 HOH HOH . O 7 HOH A 49 549 7 HOH HOH . O 7 HOH A 50 550 181 HOH HOH . O 7 HOH A 51 551 162 HOH HOH . O 7 HOH A 52 552 60 HOH HOH . O 7 HOH A 53 553 64 HOH HOH . O 7 HOH A 54 554 22 HOH HOH . O 7 HOH A 55 555 32 HOH HOH . O 7 HOH A 56 556 39 HOH HOH . O 7 HOH A 57 557 69 HOH HOH . O 7 HOH A 58 558 112 HOH HOH . O 7 HOH A 59 559 106 HOH HOH . O 7 HOH A 60 560 229 HOH HOH . O 7 HOH A 61 561 91 HOH HOH . O 7 HOH A 62 562 191 HOH HOH . O 7 HOH A 63 563 19 HOH HOH . O 7 HOH A 64 564 192 HOH HOH . O 7 HOH A 65 565 183 HOH HOH . O 7 HOH A 66 566 186 HOH HOH . O 7 HOH A 67 567 11 HOH HOH . O 7 HOH A 68 568 169 HOH HOH . O 7 HOH A 69 569 20 HOH HOH . O 7 HOH A 70 570 117 HOH HOH . O 7 HOH A 71 571 29 HOH HOH . O 7 HOH A 72 572 24 HOH HOH . O 7 HOH A 73 573 75 HOH HOH . O 7 HOH A 74 574 116 HOH HOH . O 7 HOH A 75 575 15 HOH HOH . O 7 HOH A 76 576 74 HOH HOH . O 7 HOH A 77 577 118 HOH HOH . O 7 HOH A 78 578 94 HOH HOH . O 7 HOH A 79 579 209 HOH HOH . O 7 HOH A 80 580 82 HOH HOH . O 7 HOH A 81 581 72 HOH HOH . O 7 HOH A 82 582 270 HOH HOH . O 7 HOH A 83 583 214 HOH HOH . O 7 HOH A 84 584 43 HOH HOH . O 7 HOH A 85 585 226 HOH HOH . O 7 HOH A 86 586 252 HOH HOH . O 7 HOH A 87 587 79 HOH HOH . O 7 HOH A 88 588 100 HOH HOH . O 7 HOH A 89 589 63 HOH HOH . O 7 HOH A 90 590 115 HOH HOH . O 7 HOH A 91 591 188 HOH HOH . O 7 HOH A 92 592 210 HOH HOH . O 7 HOH A 93 593 259 HOH HOH . O 7 HOH A 94 594 189 HOH HOH . O 7 HOH A 95 595 80 HOH HOH . P 7 HOH B 1 501 150 HOH HOH . P 7 HOH B 2 502 45 HOH HOH . P 7 HOH B 3 503 266 HOH HOH . P 7 HOH B 4 504 195 HOH HOH . P 7 HOH B 5 505 257 HOH HOH . P 7 HOH B 6 506 51 HOH HOH . P 7 HOH B 7 507 131 HOH HOH . P 7 HOH B 8 508 128 HOH HOH . P 7 HOH B 9 509 130 HOH HOH . P 7 HOH B 10 510 173 HOH HOH . P 7 HOH B 11 511 77 HOH HOH . P 7 HOH B 12 512 136 HOH HOH . P 7 HOH B 13 513 146 HOH HOH . P 7 HOH B 14 514 155 HOH HOH . P 7 HOH B 15 515 233 HOH HOH . P 7 HOH B 16 516 37 HOH HOH . P 7 HOH B 17 517 36 HOH HOH . P 7 HOH B 18 518 141 HOH HOH . P 7 HOH B 19 519 46 HOH HOH . P 7 HOH B 20 520 55 HOH HOH . P 7 HOH B 21 521 206 HOH HOH . P 7 HOH B 22 522 76 HOH HOH . P 7 HOH B 23 523 145 HOH HOH . P 7 HOH B 24 524 274 HOH HOH . P 7 HOH B 25 525 56 HOH HOH . P 7 HOH B 26 526 276 HOH HOH . P 7 HOH B 27 527 153 HOH HOH . P 7 HOH B 28 528 135 HOH HOH . P 7 HOH B 29 529 41 HOH HOH . P 7 HOH B 30 530 221 HOH HOH . P 7 HOH B 31 531 193 HOH HOH . P 7 HOH B 32 532 154 HOH HOH . P 7 HOH B 33 533 200 HOH HOH . P 7 HOH B 34 534 78 HOH HOH . P 7 HOH B 35 535 249 HOH HOH . P 7 HOH B 36 536 216 HOH HOH . P 7 HOH B 37 537 66 HOH HOH . P 7 HOH B 38 538 144 HOH HOH . P 7 HOH B 39 539 62 HOH HOH . P 7 HOH B 40 540 12 HOH HOH . P 7 HOH B 41 541 245 HOH HOH . P 7 HOH B 42 542 49 HOH HOH . P 7 HOH B 43 543 149 HOH HOH . P 7 HOH B 44 544 158 HOH HOH . P 7 HOH B 45 545 255 HOH HOH . P 7 HOH B 46 546 122 HOH HOH . P 7 HOH B 47 547 147 HOH HOH . P 7 HOH B 48 548 223 HOH HOH . P 7 HOH B 49 549 132 HOH HOH . P 7 HOH B 50 550 50 HOH HOH . P 7 HOH B 51 551 142 HOH HOH . P 7 HOH B 52 552 48 HOH HOH . P 7 HOH B 53 553 198 HOH HOH . P 7 HOH B 54 554 65 HOH HOH . P 7 HOH B 55 555 163 HOH HOH . P 7 HOH B 56 556 201 HOH HOH . P 7 HOH B 57 557 121 HOH HOH . P 7 HOH B 58 558 202 HOH HOH . P 7 HOH B 59 559 217 HOH HOH . P 7 HOH B 60 560 196 HOH HOH . P 7 HOH B 61 561 151 HOH HOH . P 7 HOH B 62 562 140 HOH HOH . P 7 HOH B 63 563 123 HOH HOH . P 7 HOH B 64 564 222 HOH HOH . P 7 HOH B 65 565 138 HOH HOH . P 7 HOH B 66 566 156 HOH HOH . P 7 HOH B 67 567 54 HOH HOH . P 7 HOH B 68 568 242 HOH HOH . P 7 HOH B 69 569 248 HOH HOH . P 7 HOH B 70 570 244 HOH HOH . P 7 HOH B 71 571 111 HOH HOH . P 7 HOH B 72 572 47 HOH HOH . P 7 HOH B 73 573 219 HOH HOH . P 7 HOH B 74 574 256 HOH HOH . P 7 HOH B 75 575 35 HOH HOH . Q 7 HOH D 1 1101 234 HOH HOH . Q 7 HOH D 2 1102 33 HOH HOH . Q 7 HOH D 3 1103 161 HOH HOH . Q 7 HOH D 4 1104 178 HOH HOH . R 7 HOH E 1 1101 34 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 6 _atom_site.Cartn_x 30.266 _atom_site.Cartn_y -44.78 _atom_site.Cartn_z 13.278 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 70.29 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 406 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #