data_8EYB # _model_server_result.job_id oFZck1zrkGNCQmAfUGbA2Q _model_server_result.datetime_utc '2024-11-16 10:56:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8eyb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 8EYB # _exptl.entry_id 8EYB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8EYB _cell.length_a 88.381 _cell.length_b 88.381 _cell.length_c 190.335 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EYB _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,G 1 1 B,D,F,H,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C GLU 7 D GLU 1162 1_555 C N PTR 8 D PTR 1163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 C C PTR 8 D PTR 1163 1_555 C N TYR 9 D TYR 1164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 D C GLU 7 E GLU 1162 1_555 D N PTR 8 E PTR 1163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale4 D C PTR 8 E PTR 1163 1_555 D N TYR 9 E TYR 1164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 363 n n C C2 TRS sing 364 n n C C3 TRS sing 365 n n C N TRS sing 366 n n C1 O1 TRS sing 367 n n C1 H11 TRS sing 368 n n C1 H12 TRS sing 369 n n C2 O2 TRS sing 370 n n C2 H21 TRS sing 371 n n C2 H22 TRS sing 372 n n C3 O3 TRS sing 373 n n C3 H31 TRS sing 374 n n C3 H32 TRS sing 375 n n N HN1 TRS sing 376 n n N HN2 TRS sing 377 n n N HN3 TRS sing 378 n n O1 HO1 TRS sing 379 n n O2 HO2 TRS sing 380 n n O3 HO3 TRS sing 381 n n # _atom_sites.entry_id 8EYB _atom_sites.fract_transf_matrix[1][1] 0.011315 _atom_sites.fract_transf_matrix[1][2] 0.006533 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013065 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005254 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 TRS A 1 301 2 TRS TRS . F 3 TRS B 1 301 1 TRS TRS . G 4 HOH A 1 401 13 HOH HOH . G 4 HOH A 2 402 1 HOH HOH . G 4 HOH A 3 403 26 HOH HOH . G 4 HOH A 4 404 19 HOH HOH . G 4 HOH A 5 405 25 HOH HOH . G 4 HOH A 6 406 139 HOH HOH . G 4 HOH A 7 407 21 HOH HOH . G 4 HOH A 8 408 159 HOH HOH . G 4 HOH A 9 409 18 HOH HOH . G 4 HOH A 10 410 28 HOH HOH . G 4 HOH A 11 411 62 HOH HOH . G 4 HOH A 12 412 113 HOH HOH . G 4 HOH A 13 413 9 HOH HOH . G 4 HOH A 14 414 160 HOH HOH . G 4 HOH A 15 415 14 HOH HOH . G 4 HOH A 16 416 17 HOH HOH . G 4 HOH A 17 417 22 HOH HOH . G 4 HOH A 18 418 29 HOH HOH . G 4 HOH A 19 419 117 HOH HOH . G 4 HOH A 20 420 5 HOH HOH . G 4 HOH A 21 421 57 HOH HOH . G 4 HOH A 22 422 94 HOH HOH . G 4 HOH A 23 423 7 HOH HOH . G 4 HOH A 24 424 150 HOH HOH . G 4 HOH A 25 425 103 HOH HOH . G 4 HOH A 26 426 24 HOH HOH . G 4 HOH A 27 427 53 HOH HOH . G 4 HOH A 28 428 2 HOH HOH . G 4 HOH A 29 429 23 HOH HOH . G 4 HOH A 30 430 12 HOH HOH . G 4 HOH A 31 431 95 HOH HOH . G 4 HOH A 32 432 74 HOH HOH . G 4 HOH A 33 433 107 HOH HOH . G 4 HOH A 34 434 11 HOH HOH . G 4 HOH A 35 435 109 HOH HOH . G 4 HOH A 36 436 63 HOH HOH . G 4 HOH A 37 437 6 HOH HOH . G 4 HOH A 38 438 166 HOH HOH . G 4 HOH A 39 439 27 HOH HOH . G 4 HOH A 40 440 16 HOH HOH . G 4 HOH A 41 441 10 HOH HOH . G 4 HOH A 42 442 20 HOH HOH . G 4 HOH A 43 443 149 HOH HOH . G 4 HOH A 44 444 30 HOH HOH . G 4 HOH A 45 445 114 HOH HOH . G 4 HOH A 46 446 108 HOH HOH . G 4 HOH A 47 447 54 HOH HOH . G 4 HOH A 48 448 15 HOH HOH . G 4 HOH A 49 449 165 HOH HOH . G 4 HOH A 50 450 132 HOH HOH . G 4 HOH A 51 451 3 HOH HOH . G 4 HOH A 52 452 56 HOH HOH . G 4 HOH A 53 453 96 HOH HOH . G 4 HOH A 54 454 154 HOH HOH . G 4 HOH A 55 455 105 HOH HOH . G 4 HOH A 56 456 106 HOH HOH . G 4 HOH A 57 457 73 HOH HOH . G 4 HOH A 58 458 116 HOH HOH . G 4 HOH A 59 459 138 HOH HOH . G 4 HOH A 60 460 167 HOH HOH . H 4 HOH B 1 401 58 HOH HOH . H 4 HOH B 2 402 76 HOH HOH . H 4 HOH B 3 403 42 HOH HOH . H 4 HOH B 4 404 91 HOH HOH . H 4 HOH B 5 405 124 HOH HOH . H 4 HOH B 6 406 79 HOH HOH . H 4 HOH B 7 407 142 HOH HOH . H 4 HOH B 8 408 37 HOH HOH . H 4 HOH B 9 409 50 HOH HOH . H 4 HOH B 10 410 67 HOH HOH . H 4 HOH B 11 411 47 HOH HOH . H 4 HOH B 12 412 77 HOH HOH . H 4 HOH B 13 413 68 HOH HOH . H 4 HOH B 14 414 123 HOH HOH . H 4 HOH B 15 415 43 HOH HOH . H 4 HOH B 16 416 84 HOH HOH . H 4 HOH B 17 417 80 HOH HOH . H 4 HOH B 18 418 143 HOH HOH . H 4 HOH B 19 419 81 HOH HOH . H 4 HOH B 20 420 33 HOH HOH . H 4 HOH B 21 421 40 HOH HOH . H 4 HOH B 22 422 82 HOH HOH . H 4 HOH B 23 423 140 HOH HOH . H 4 HOH B 24 424 34 HOH HOH . H 4 HOH B 25 425 90 HOH HOH . H 4 HOH B 26 426 101 HOH HOH . H 4 HOH B 27 427 46 HOH HOH . H 4 HOH B 28 428 121 HOH HOH . H 4 HOH B 29 429 69 HOH HOH . H 4 HOH B 30 430 45 HOH HOH . H 4 HOH B 31 431 125 HOH HOH . H 4 HOH B 32 432 41 HOH HOH . H 4 HOH B 33 433 92 HOH HOH . H 4 HOH B 34 434 59 HOH HOH . H 4 HOH B 35 435 100 HOH HOH . H 4 HOH B 36 436 39 HOH HOH . H 4 HOH B 37 437 164 HOH HOH . H 4 HOH B 38 438 44 HOH HOH . H 4 HOH B 39 439 32 HOH HOH . H 4 HOH B 40 440 36 HOH HOH . H 4 HOH B 41 441 85 HOH HOH . H 4 HOH B 42 442 134 HOH HOH . H 4 HOH B 43 443 89 HOH HOH . H 4 HOH B 44 444 122 HOH HOH . H 4 HOH B 45 445 51 HOH HOH . H 4 HOH B 46 446 52 HOH HOH . H 4 HOH B 47 447 147 HOH HOH . H 4 HOH B 48 448 38 HOH HOH . H 4 HOH B 49 449 66 HOH HOH . H 4 HOH B 50 450 31 HOH HOH . H 4 HOH B 51 451 141 HOH HOH . H 4 HOH B 52 452 135 HOH HOH . H 4 HOH B 53 453 78 HOH HOH . I 4 HOH E 1 1201 99 HOH HOH . I 4 HOH E 2 1202 71 HOH HOH . I 4 HOH E 3 1203 168 HOH HOH . I 4 HOH E 4 1204 129 HOH HOH . I 4 HOH E 5 1205 128 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . F 3 -6.974 54.897 -0.88 1 63.84 ? C TRS 301 B 1 HETATM 2 C C1 TRS . . . F 3 -7.204 56.416 -0.882 1 61.8 ? C1 TRS 301 B 1 HETATM 3 C C2 TRS . . . F 3 -8.176 54.16 -0.319 1 64.76 ? C2 TRS 301 B 1 HETATM 4 C C3 TRS . . . F 3 -5.752 54.635 -0.008 1 72.23 ? C3 TRS 301 B 1 HETATM 5 N N TRS . . . F 3 -6.731 54.446 -2.336 1 64.08 ? N TRS 301 B 1 HETATM 6 O O1 TRS . . . F 3 -8.536 56.753 -1.214 1 66.68 ? O1 TRS 301 B 1 HETATM 7 O O2 TRS . . . F 3 -9.308 54.419 -1.128 1 59.01 ? O2 TRS 301 B 1 HETATM 8 O O3 TRS . . . F 3 -4.765 55.598 -0.331 1 76.34 ? O3 TRS 301 B 1 HETATM 9 H H11 TRS . . . F 3 -6.527 56.88 -1.6 1 74.13 ? H11 TRS 301 B 1 HETATM 10 H H12 TRS . . . F 3 -6.97 56.815 0.105 1 74.13 ? H12 TRS 301 B 1 HETATM 11 H H21 TRS . . . F 3 -8.368 54.487 0.702 1 77.68 ? H21 TRS 301 B 1 HETATM 12 H H22 TRS . . . F 3 -7.976 53.089 -0.296 1 77.68 ? H22 TRS 301 B 1 HETATM 13 H H31 TRS . . . F 3 -6.019 54.709 1.046 1 86.64 ? H31 TRS 301 B 1 HETATM 14 H H32 TRS . . . F 3 -5.37 53.63 -0.187 1 86.64 ? H32 TRS 301 B 1 HETATM 15 H HN1 TRS . . . F 3 -5.906 54.764 -2.835 1 76.87 ? HN1 TRS 301 B 1 HETATM 16 H HN2 TRS . . . F 3 -7.41 54.67 -3.057 1 76.87 ? HN2 TRS 301 B 1 HETATM 17 H HN3 TRS . . . F 3 -6.638 53.459 -2.553 1 76.87 ? HN3 TRS 301 B 1 HETATM 18 H HO1 TRS . . . F 3 -8.62 57.727 -1.278 1 79.99 ? HO1 TRS 301 B 1 HETATM 19 H HO2 TRS . . . F 3 -10.108 54.05 -0.699 1 70.79 ? HO2 TRS 301 B 1 HETATM 20 H HO3 TRS . . . F 3 -3.998 55.495 0.271 1 91.58 ? HO3 TRS 301 B 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #