data_8EYM # _model_server_result.job_id I4enXBNfmRoY8uFqvgQuhg _model_server_result.datetime_utc '2024-11-25 00:17:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8eym # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 8EYM # _exptl.entry_id 8EYM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 301.188 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-6-O-phosphono-alpha-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8EYM _cell.length_a 73.181 _cell.length_b 80.237 _cell.length_c 91.508 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EYM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C8 H16 N O9 P' _chem_comp.formula_weight 301.188 _chem_comp.id 16G _chem_comp.mon_nstd_flag n _chem_comp.name 2-acetamido-2-deoxy-6-O-phosphono-alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms N-ACETYL-D-GLUCOSAMINE-6-PHOSPHATE;N-acetyl-6-O-phosphono-alpha-D-glucosamine;2-acetamido-2-deoxy-6-O-phosphono-alpha-D-glucose;2-acetamido-2-deoxy-6-O-phosphono-D-glucose;2-acetamido-2-deoxy-6-O-phosphono-glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 16G sing 1 n n C1 O1 16G sing 2 n n C1 O5 16G sing 3 n n C1 H1 16G sing 4 n n C2 C3 16G sing 5 n n C2 N2 16G sing 6 n n C2 H2 16G sing 7 n n C3 C4 16G sing 8 n n C3 O3 16G sing 9 n n C3 H3 16G sing 10 n n C4 C5 16G sing 11 n n C4 O4 16G sing 12 n n C4 H4 16G sing 13 n n C5 C6 16G sing 14 n n C5 O5 16G sing 15 n n C5 H5 16G sing 16 n n C6 O6 16G sing 17 n n C6 H61 16G sing 18 n n C6 H62 16G sing 19 n n C7 C8 16G sing 20 n n C7 N2 16G sing 21 n n C7 O7 16G doub 22 n n C8 H81 16G sing 23 n n C8 H82 16G sing 24 n n C8 H83 16G sing 25 n n N2 HN2 16G sing 26 n n O1 HO1 16G sing 27 n n O3 HO3 16G sing 28 n n O4 HO4 16G sing 29 n n O6 P 16G sing 30 n n P O1P 16G doub 31 n n P O2P 16G sing 32 n n P O3P 16G sing 33 n n O2P HOP2 16G sing 34 n n O3P HOP3 16G sing 35 n n # _pdbx_chem_comp_identifier.comp_id 16G _pdbx_chem_comp_identifier.identifier a-D-GlcpNAc6PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 8EYM _atom_sites.fract_transf_matrix[1][1] 0.013665 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012463 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010928 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 16G A 1 401 401 16G 16G . D 3 AGP A 1 402 501 AGP AGP . E 2 16G B 1 401 401 16G 16G . F 3 AGP B 1 402 501 AGP AGP . G 4 HOH A 1 501 91 HOH HOH . G 4 HOH A 2 502 5 HOH HOH . G 4 HOH A 3 503 9 HOH HOH . G 4 HOH A 4 504 44 HOH HOH . G 4 HOH A 5 505 123 HOH HOH . G 4 HOH A 6 506 43 HOH HOH . G 4 HOH A 7 507 39 HOH HOH . G 4 HOH A 8 508 101 HOH HOH . G 4 HOH A 9 509 10 HOH HOH . G 4 HOH A 10 510 112 HOH HOH . G 4 HOH A 11 511 23 HOH HOH . G 4 HOH A 12 512 79 HOH HOH . G 4 HOH A 13 513 26 HOH HOH . G 4 HOH A 14 514 17 HOH HOH . G 4 HOH A 15 515 25 HOH HOH . G 4 HOH A 16 516 2 HOH HOH . G 4 HOH A 17 517 42 HOH HOH . G 4 HOH A 18 518 110 HOH HOH . G 4 HOH A 19 519 64 HOH HOH . G 4 HOH A 20 520 24 HOH HOH . G 4 HOH A 21 521 55 HOH HOH . G 4 HOH A 22 522 93 HOH HOH . G 4 HOH A 23 523 28 HOH HOH . G 4 HOH A 24 524 89 HOH HOH . G 4 HOH A 25 525 77 HOH HOH . G 4 HOH A 26 526 33 HOH HOH . G 4 HOH A 27 527 53 HOH HOH . G 4 HOH A 28 528 159 HOH HOH . G 4 HOH A 29 529 59 HOH HOH . G 4 HOH A 30 530 16 HOH HOH . G 4 HOH A 31 531 97 HOH HOH . G 4 HOH A 32 532 80 HOH HOH . G 4 HOH A 33 533 113 HOH HOH . G 4 HOH A 34 534 37 HOH HOH . G 4 HOH A 35 535 63 HOH HOH . G 4 HOH A 36 536 31 HOH HOH . G 4 HOH A 37 537 48 HOH HOH . G 4 HOH A 38 538 153 HOH HOH . G 4 HOH A 39 539 165 HOH HOH . G 4 HOH A 40 540 125 HOH HOH . G 4 HOH A 41 541 178 HOH HOH . G 4 HOH A 42 542 122 HOH HOH . G 4 HOH A 43 543 74 HOH HOH . G 4 HOH A 44 544 108 HOH HOH . G 4 HOH A 45 545 46 HOH HOH . G 4 HOH A 46 546 6 HOH HOH . G 4 HOH A 47 547 177 HOH HOH . G 4 HOH A 48 548 154 HOH HOH . G 4 HOH A 49 549 103 HOH HOH . G 4 HOH A 50 550 162 HOH HOH . G 4 HOH A 51 551 111 HOH HOH . G 4 HOH A 52 552 88 HOH HOH . G 4 HOH A 53 553 147 HOH HOH . G 4 HOH A 54 554 137 HOH HOH . G 4 HOH A 55 555 132 HOH HOH . G 4 HOH A 56 556 167 HOH HOH . G 4 HOH A 57 557 163 HOH HOH . G 4 HOH A 58 558 158 HOH HOH . G 4 HOH A 59 559 152 HOH HOH . G 4 HOH A 60 560 176 HOH HOH . G 4 HOH A 61 561 140 HOH HOH . G 4 HOH A 62 562 133 HOH HOH . G 4 HOH A 63 563 156 HOH HOH . G 4 HOH A 64 564 173 HOH HOH . G 4 HOH A 65 565 155 HOH HOH . G 4 HOH A 66 566 157 HOH HOH . G 4 HOH A 67 567 143 HOH HOH . G 4 HOH A 68 568 151 HOH HOH . G 4 HOH A 69 569 184 HOH HOH . G 4 HOH A 70 570 168 HOH HOH . G 4 HOH A 71 571 183 HOH HOH . G 4 HOH A 72 572 118 HOH HOH . G 4 HOH A 73 573 150 HOH HOH . G 4 HOH A 74 574 164 HOH HOH . H 4 HOH B 1 501 65 HOH HOH . H 4 HOH B 2 502 72 HOH HOH . H 4 HOH B 3 503 114 HOH HOH . H 4 HOH B 4 504 51 HOH HOH . H 4 HOH B 5 505 22 HOH HOH . H 4 HOH B 6 506 126 HOH HOH . H 4 HOH B 7 507 1 HOH HOH . H 4 HOH B 8 508 56 HOH HOH . H 4 HOH B 9 509 78 HOH HOH . H 4 HOH B 10 510 8 HOH HOH . H 4 HOH B 11 511 32 HOH HOH . H 4 HOH B 12 512 61 HOH HOH . H 4 HOH B 13 513 12 HOH HOH . H 4 HOH B 14 514 169 HOH HOH . H 4 HOH B 15 515 68 HOH HOH . H 4 HOH B 16 516 130 HOH HOH . H 4 HOH B 17 517 13 HOH HOH . H 4 HOH B 18 518 40 HOH HOH . H 4 HOH B 19 519 3 HOH HOH . H 4 HOH B 20 520 76 HOH HOH . H 4 HOH B 21 521 19 HOH HOH . H 4 HOH B 22 522 4 HOH HOH . H 4 HOH B 23 523 35 HOH HOH . H 4 HOH B 24 524 67 HOH HOH . H 4 HOH B 25 525 11 HOH HOH . H 4 HOH B 26 526 21 HOH HOH . H 4 HOH B 27 527 36 HOH HOH . H 4 HOH B 28 528 20 HOH HOH . H 4 HOH B 29 529 121 HOH HOH . H 4 HOH B 30 530 57 HOH HOH . H 4 HOH B 31 531 82 HOH HOH . H 4 HOH B 32 532 139 HOH HOH . H 4 HOH B 33 533 73 HOH HOH . H 4 HOH B 34 534 102 HOH HOH . H 4 HOH B 35 535 50 HOH HOH . H 4 HOH B 36 536 27 HOH HOH . H 4 HOH B 37 537 30 HOH HOH . H 4 HOH B 38 538 120 HOH HOH . H 4 HOH B 39 539 34 HOH HOH . H 4 HOH B 40 540 7 HOH HOH . H 4 HOH B 41 541 47 HOH HOH . H 4 HOH B 42 542 94 HOH HOH . H 4 HOH B 43 543 83 HOH HOH . H 4 HOH B 44 544 75 HOH HOH . H 4 HOH B 45 545 95 HOH HOH . H 4 HOH B 46 546 131 HOH HOH . H 4 HOH B 47 547 38 HOH HOH . H 4 HOH B 48 548 18 HOH HOH . H 4 HOH B 49 549 29 HOH HOH . H 4 HOH B 50 550 60 HOH HOH . H 4 HOH B 51 551 69 HOH HOH . H 4 HOH B 52 552 81 HOH HOH . H 4 HOH B 53 553 41 HOH HOH . H 4 HOH B 54 554 52 HOH HOH . H 4 HOH B 55 555 86 HOH HOH . H 4 HOH B 56 556 161 HOH HOH . H 4 HOH B 57 557 45 HOH HOH . H 4 HOH B 58 558 15 HOH HOH . H 4 HOH B 59 559 124 HOH HOH . H 4 HOH B 60 560 85 HOH HOH . H 4 HOH B 61 561 66 HOH HOH . H 4 HOH B 62 562 54 HOH HOH . H 4 HOH B 63 563 96 HOH HOH . H 4 HOH B 64 564 14 HOH HOH . H 4 HOH B 65 565 182 HOH HOH . H 4 HOH B 66 566 174 HOH HOH . H 4 HOH B 67 567 90 HOH HOH . H 4 HOH B 68 568 70 HOH HOH . H 4 HOH B 69 569 49 HOH HOH . H 4 HOH B 70 570 166 HOH HOH . H 4 HOH B 71 571 109 HOH HOH . H 4 HOH B 72 572 128 HOH HOH . H 4 HOH B 73 573 106 HOH HOH . H 4 HOH B 74 574 104 HOH HOH . H 4 HOH B 75 575 146 HOH HOH . H 4 HOH B 76 576 98 HOH HOH . H 4 HOH B 77 577 142 HOH HOH . H 4 HOH B 78 578 141 HOH HOH . H 4 HOH B 79 579 145 HOH HOH . H 4 HOH B 80 580 171 HOH HOH . H 4 HOH B 81 581 71 HOH HOH . H 4 HOH B 82 582 92 HOH HOH . H 4 HOH B 83 583 107 HOH HOH . H 4 HOH B 84 584 100 HOH HOH . H 4 HOH B 85 585 144 HOH HOH . H 4 HOH B 86 586 181 HOH HOH . H 4 HOH B 87 587 84 HOH HOH . H 4 HOH B 88 588 180 HOH HOH . H 4 HOH B 89 589 135 HOH HOH . H 4 HOH B 90 590 148 HOH HOH . H 4 HOH B 91 591 179 HOH HOH . H 4 HOH B 92 592 99 HOH HOH . H 4 HOH B 93 593 105 HOH HOH . H 4 HOH B 94 594 170 HOH HOH . H 4 HOH B 95 595 136 HOH HOH . H 4 HOH B 96 596 172 HOH HOH . H 4 HOH B 97 597 119 HOH HOH . H 4 HOH B 98 598 138 HOH HOH . H 4 HOH B 99 599 58 HOH HOH . H 4 HOH B 100 600 62 HOH HOH . H 4 HOH B 101 601 175 HOH HOH . H 4 HOH B 102 602 115 HOH HOH . H 4 HOH B 103 603 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 16G . . . C 2 -1.733 -5.469 -4.461 1 40.7 ? C1 16G 401 A 1 HETATM 2 C C2 16G . . . C 2 -1.86 -4.718 -3.112 1 44.4 ? C2 16G 401 A 1 HETATM 3 C C3 16G . . . C 2 -3.285 -4.629 -2.573 1 42.17 ? C3 16G 401 A 1 HETATM 4 C C4 16G . . . C 2 -4.26 -4.287 -3.682 1 39.99 ? C4 16G 401 A 1 HETATM 5 C C5 16G . . . C 2 -4.15 -5.35 -4.764 1 37.13 ? C5 16G 401 A 1 HETATM 6 C C6 16G . . . C 2 -5.161 -5.057 -5.856 1 35.75 ? C6 16G 401 A 1 HETATM 7 C C7 16G . . . C 2 0.125 -4.861 -1.616 1 44.03 ? C7 16G 401 A 1 HETATM 8 C C8 16G . . . C 2 0.846 -3.829 -2.455 1 43.78 ? C8 16G 401 A 1 HETATM 9 N N2 16G . . . C 2 -1.052 -5.322 -2.062 1 41.16 ? N2 16G 401 A 1 HETATM 10 O O1 16G . . . C 2 -1.47 -6.86 -4.274 1 40.86 ? O1 16G 401 A 1 HETATM 11 O O3 16G . . . C 2 -3.295 -3.586 -1.595 1 43.99 ? O3 16G 401 A 1 HETATM 12 O O4 16G . . . C 2 -5.602 -4.221 -3.177 1 41.7 ? O4 16G 401 A 1 HETATM 13 O O5 16G . . . C 2 -2.854 -5.311 -5.35 1 42.12 ? O5 16G 401 A 1 HETATM 14 O O6 16G . . . C 2 -5.457 -6.271 -6.54 1 38.81 ? O6 16G 401 A 1 HETATM 15 O O7 16G . . . C 2 0.591 -5.286 -0.555 1 44.08 ? O7 16G 401 A 1 HETATM 16 P P 16G . . . C 2 -6.223 -6.249 -7.966 1 43.03 ? P 16G 401 A 1 HETATM 17 O O1P 16G . . . C 2 -5.202 -5.659 -8.915 1 34.42 ? O1P 16G 401 A 1 HETATM 18 O O2P 16G . . . C 2 -6.608 -7.683 -8.24 1 39.83 ? O2P 16G 401 A 1 HETATM 19 O O3P 16G . . . C 2 -7.427 -5.377 -7.711 1 36.82 ? O3P 16G 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #