data_8EZP # _model_server_result.job_id Jc5PzbL6TIC8_dB0tg49LQ _model_server_result.datetime_utc '2024-11-13 06:52:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ezp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":208}' # _entry.id 8EZP # _exptl.entry_id 8EZP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8EZP _cell.length_a 77.502 _cell.length_b 77.502 _cell.length_c 37.177 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EZP _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? metalc ? metalc1 A O SER 60 A SER 60 1_555 I NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc2 A O CYS 64 A CYS 64 1_555 I NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc3 A OG SER 72 A SER 72 1_555 I NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc4 A O ARG 73 A ARG 73 1_555 I NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc5 I NA NA . A NA 208 1_555 K O HOH . A HOH 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc6 I NA NA . A NA 208 1_555 K O HOH . A HOH 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8EZP _atom_sites.fract_transf_matrix[1][1] 0.012903 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012903 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026898 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 201 201 CL CL . C 2 CL A 1 202 202 CL CL . D 2 CL A 1 203 203 CL CL . E 2 CL A 1 204 204 CL CL . F 2 CL A 1 205 205 CL CL . G 2 CL A 1 206 207 CL CL . H 2 CL A 1 207 208 CL CL . I 3 NA A 1 208 209 NA NA . J 4 EDO A 1 209 210 EDO EDO . K 5 HOH A 1 301 99 HOH HOH . K 5 HOH A 2 302 98 HOH HOH . K 5 HOH A 3 303 101 HOH HOH . K 5 HOH A 4 304 55 HOH HOH . K 5 HOH A 5 305 58 HOH HOH . K 5 HOH A 6 306 26 HOH HOH . K 5 HOH A 7 307 21 HOH HOH . K 5 HOH A 8 308 18 HOH HOH . K 5 HOH A 9 309 35 HOH HOH . K 5 HOH A 10 310 1 HOH HOH . K 5 HOH A 11 311 97 HOH HOH . K 5 HOH A 12 312 39 HOH HOH . K 5 HOH A 13 313 45 HOH HOH . K 5 HOH A 14 314 85 HOH HOH . K 5 HOH A 15 315 67 HOH HOH . K 5 HOH A 16 316 33 HOH HOH . K 5 HOH A 17 317 84 HOH HOH . K 5 HOH A 18 318 65 HOH HOH . K 5 HOH A 19 319 82 HOH HOH . K 5 HOH A 20 320 90 HOH HOH . K 5 HOH A 21 321 13 HOH HOH . K 5 HOH A 22 322 100 HOH HOH . K 5 HOH A 23 323 41 HOH HOH . K 5 HOH A 24 324 2 HOH HOH . K 5 HOH A 25 325 54 HOH HOH . K 5 HOH A 26 326 24 HOH HOH . K 5 HOH A 27 327 29 HOH HOH . K 5 HOH A 28 328 25 HOH HOH . K 5 HOH A 29 329 17 HOH HOH . K 5 HOH A 30 330 81 HOH HOH . K 5 HOH A 31 331 9 HOH HOH . K 5 HOH A 32 332 79 HOH HOH . K 5 HOH A 33 333 59 HOH HOH . K 5 HOH A 34 334 88 HOH HOH . K 5 HOH A 35 335 42 HOH HOH . K 5 HOH A 36 336 10 HOH HOH . K 5 HOH A 37 337 61 HOH HOH . K 5 HOH A 38 338 87 HOH HOH . K 5 HOH A 39 339 3 HOH HOH . K 5 HOH A 40 340 57 HOH HOH . K 5 HOH A 41 341 31 HOH HOH . K 5 HOH A 42 342 68 HOH HOH . K 5 HOH A 43 343 23 HOH HOH . K 5 HOH A 44 344 74 HOH HOH . K 5 HOH A 45 345 7 HOH HOH . K 5 HOH A 46 346 28 HOH HOH . K 5 HOH A 47 347 95 HOH HOH . K 5 HOH A 48 348 34 HOH HOH . K 5 HOH A 49 349 27 HOH HOH . K 5 HOH A 50 350 53 HOH HOH . K 5 HOH A 51 351 89 HOH HOH . K 5 HOH A 52 352 86 HOH HOH . K 5 HOH A 53 353 60 HOH HOH . K 5 HOH A 54 354 92 HOH HOH . K 5 HOH A 55 355 22 HOH HOH . K 5 HOH A 56 356 62 HOH HOH . K 5 HOH A 57 357 5 HOH HOH . K 5 HOH A 58 358 63 HOH HOH . K 5 HOH A 59 359 47 HOH HOH . K 5 HOH A 60 360 12 HOH HOH . K 5 HOH A 61 361 20 HOH HOH . K 5 HOH A 62 362 40 HOH HOH . K 5 HOH A 63 363 4 HOH HOH . K 5 HOH A 64 364 48 HOH HOH . K 5 HOH A 65 365 50 HOH HOH . K 5 HOH A 66 366 6 HOH HOH . K 5 HOH A 67 367 38 HOH HOH . K 5 HOH A 68 368 107 HOH HOH . K 5 HOH A 69 369 32 HOH HOH . K 5 HOH A 70 370 37 HOH HOH . K 5 HOH A 71 371 51 HOH HOH . K 5 HOH A 72 372 91 HOH HOH . K 5 HOH A 73 373 8 HOH HOH . K 5 HOH A 74 374 75 HOH HOH . K 5 HOH A 75 375 49 HOH HOH . K 5 HOH A 76 376 30 HOH HOH . K 5 HOH A 77 377 36 HOH HOH . K 5 HOH A 78 378 16 HOH HOH . K 5 HOH A 79 379 11 HOH HOH . K 5 HOH A 80 380 76 HOH HOH . K 5 HOH A 81 381 72 HOH HOH . K 5 HOH A 82 382 52 HOH HOH . K 5 HOH A 83 383 77 HOH HOH . K 5 HOH A 84 384 14 HOH HOH . K 5 HOH A 85 385 78 HOH HOH . K 5 HOH A 86 386 73 HOH HOH . K 5 HOH A 87 387 56 HOH HOH . K 5 HOH A 88 388 71 HOH HOH . K 5 HOH A 89 389 46 HOH HOH . K 5 HOH A 90 390 83 HOH HOH . K 5 HOH A 91 391 44 HOH HOH . K 5 HOH A 92 392 80 HOH HOH . K 5 HOH A 93 393 19 HOH HOH . K 5 HOH A 94 394 15 HOH HOH . K 5 HOH A 95 395 105 HOH HOH . K 5 HOH A 96 396 94 HOH HOH . K 5 HOH A 97 397 96 HOH HOH . K 5 HOH A 98 398 102 HOH HOH . K 5 HOH A 99 399 66 HOH HOH . K 5 HOH A 100 400 64 HOH HOH . K 5 HOH A 101 401 43 HOH HOH . K 5 HOH A 102 402 69 HOH HOH . K 5 HOH A 103 403 106 HOH HOH . K 5 HOH A 104 404 104 HOH HOH . K 5 HOH A 105 405 70 HOH HOH . K 5 HOH A 106 406 93 HOH HOH . K 5 HOH A 107 407 103 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 3 _atom_site.Cartn_x 25.453 _atom_site.Cartn_y 31.589 _atom_site.Cartn_z -13.039 _atom_site.occupancy 0.86 _atom_site.B_iso_or_equiv 23.87 _atom_site.pdbx_formal_charge 0 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 208 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #