data_8EZZ # _model_server_result.job_id Q_xmoToiQj_WUlvs0JviMQ _model_server_result.datetime_utc '2024-11-14 20:57:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ezz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8EZZ # _exptl.entry_id 8EZZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 637.639 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,2S,5S)-N-{(2S,3R)-4-(3,3-difluoroazetidin-1-yl)-3-hydroxy-4-oxo-1-[(3S)-2-oxopiperidin-3-yl]butan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8EZZ _cell.length_a 45.494 _cell.length_b 63.18 _cell.length_c 103.655 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8EZZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C18 _struct_conn.ptnr2_label_comp_id X70 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id X70 _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.871 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C28 H40 F5 N5 O6' _chem_comp.formula_weight 637.639 _chem_comp.id X70 _chem_comp.mon_nstd_flag . _chem_comp.name (1R,2S,5S)-N-{(2S,3R)-4-(3,3-difluoroazetidin-1-yl)-3-hydroxy-4-oxo-1-[(3S)-2-oxopiperidin-3-yl]butan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F2 C16 X70 sing 376 n n C16 F3 X70 sing 377 n n C16 F1 X70 sing 378 n n C16 C15 X70 sing 379 n n C12 C11 X70 sing 380 n n C15 O2 X70 doub 381 n n C15 N2 X70 sing 382 n n C14 C11 X70 sing 383 n n N2 C10 X70 sing 384 n n C11 C10 X70 sing 385 n n C11 C13 X70 sing 386 n n C10 C9 X70 sing 387 n n C27 C26 X70 sing 388 n n C27 N5 X70 sing 389 n n C26 C25 X70 sing 390 n n O3 C9 X70 doub 391 n n C9 N1 X70 sing 392 n n N5 C28 X70 sing 393 n n C28 O6 X70 doub 394 n n C28 C24 X70 sing 395 n n N1 C8 X70 sing 396 n n N1 C2 X70 sing 397 n n C8 C4 X70 sing 398 n n C25 C24 X70 sing 399 n n C24 C23 X70 sing 400 n n C6 C5 X70 sing 401 n n C2 C1 X70 sing 402 n n C2 C3 X70 sing 403 n n O1 C1 X70 doub 404 n n C4 C5 X70 sing 405 n n C4 C3 X70 sing 406 n n C1 N3 X70 sing 407 n n C23 C17 X70 sing 408 n n C5 C3 X70 sing 409 n n C5 C7 X70 sing 410 n n N3 C17 X70 sing 411 n n C17 C18 X70 sing 412 n n C18 O4 X70 sing 413 n n C18 C19 X70 sing 414 n n O5 C19 X70 doub 415 n n C19 N4 X70 sing 416 n n F5 C21 X70 sing 417 n n N4 C20 X70 sing 418 n n N4 C22 X70 sing 419 n n C20 C21 X70 sing 420 n n C22 C21 X70 sing 421 n n C21 F4 X70 sing 422 n n N3 H1 X70 sing 423 n n C4 H2 X70 sing 424 n n C6 H3 X70 sing 425 n n C6 H4 X70 sing 426 n n C6 H5 X70 sing 427 n n C7 H6 X70 sing 428 n n C7 H7 X70 sing 429 n n C7 H8 X70 sing 430 n n C8 H9 X70 sing 431 n n C8 H10 X70 sing 432 n n C10 H11 X70 sing 433 n n C13 H12 X70 sing 434 n n C13 H13 X70 sing 435 n n C13 H14 X70 sing 436 n n C17 H15 X70 sing 437 n n C20 H16 X70 sing 438 n n C20 H17 X70 sing 439 n n C22 H18 X70 sing 440 n n C22 H19 X70 sing 441 n n C24 H20 X70 sing 442 n n C26 H21 X70 sing 443 n n C26 H22 X70 sing 444 n n C2 H23 X70 sing 445 n n N2 H24 X70 sing 446 n n C3 H25 X70 sing 447 n n O4 H26 X70 sing 448 n n N5 H27 X70 sing 449 n n C12 H28 X70 sing 450 n n C12 H29 X70 sing 451 n n C12 H30 X70 sing 452 n n C14 H31 X70 sing 453 n n C14 H32 X70 sing 454 n n C14 H33 X70 sing 455 n n C18 H34 X70 sing 456 n n C23 H35 X70 sing 457 n n C23 H36 X70 sing 458 n n C25 H37 X70 sing 459 n n C25 H38 X70 sing 460 n n C27 H39 X70 sing 461 n n C27 H40 X70 sing 462 n n # _atom_sites.entry_id 8EZZ _atom_sites.fract_transf_matrix[1][1] 0.021981 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015828 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009647 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 X70 A 1 401 401 X70 LIG . C 3 CL A 1 402 1 CL CL . D 4 HOH A 1 501 32 HOH HOH . D 4 HOH A 2 502 47 HOH HOH . D 4 HOH A 3 503 62 HOH HOH . D 4 HOH A 4 504 97 HOH HOH . D 4 HOH A 5 505 34 HOH HOH . D 4 HOH A 6 506 66 HOH HOH . D 4 HOH A 7 507 123 HOH HOH . D 4 HOH A 8 508 118 HOH HOH . D 4 HOH A 9 509 14 HOH HOH . D 4 HOH A 10 510 38 HOH HOH . D 4 HOH A 11 511 80 HOH HOH . D 4 HOH A 12 512 59 HOH HOH . D 4 HOH A 13 513 44 HOH HOH . D 4 HOH A 14 514 56 HOH HOH . D 4 HOH A 15 515 113 HOH HOH . D 4 HOH A 16 516 11 HOH HOH . D 4 HOH A 17 517 45 HOH HOH . D 4 HOH A 18 518 58 HOH HOH . D 4 HOH A 19 519 15 HOH HOH . D 4 HOH A 20 520 54 HOH HOH . D 4 HOH A 21 521 9 HOH HOH . D 4 HOH A 22 522 8 HOH HOH . D 4 HOH A 23 523 94 HOH HOH . D 4 HOH A 24 524 30 HOH HOH . D 4 HOH A 25 525 43 HOH HOH . D 4 HOH A 26 526 3 HOH HOH . D 4 HOH A 27 527 16 HOH HOH . D 4 HOH A 28 528 55 HOH HOH . D 4 HOH A 29 529 20 HOH HOH . D 4 HOH A 30 530 42 HOH HOH . D 4 HOH A 31 531 60 HOH HOH . D 4 HOH A 32 532 17 HOH HOH . D 4 HOH A 33 533 19 HOH HOH . D 4 HOH A 34 534 110 HOH HOH . D 4 HOH A 35 535 25 HOH HOH . D 4 HOH A 36 536 41 HOH HOH . D 4 HOH A 37 537 40 HOH HOH . D 4 HOH A 38 538 81 HOH HOH . D 4 HOH A 39 539 102 HOH HOH . D 4 HOH A 40 540 1 HOH HOH . D 4 HOH A 41 541 6 HOH HOH . D 4 HOH A 42 542 117 HOH HOH . D 4 HOH A 43 543 85 HOH HOH . D 4 HOH A 44 544 33 HOH HOH . D 4 HOH A 45 545 108 HOH HOH . D 4 HOH A 46 546 79 HOH HOH . D 4 HOH A 47 547 10 HOH HOH . D 4 HOH A 48 548 75 HOH HOH . D 4 HOH A 49 549 70 HOH HOH . D 4 HOH A 50 550 36 HOH HOH . D 4 HOH A 51 551 37 HOH HOH . D 4 HOH A 52 552 35 HOH HOH . D 4 HOH A 53 553 22 HOH HOH . D 4 HOH A 54 554 106 HOH HOH . D 4 HOH A 55 555 2 HOH HOH . D 4 HOH A 56 556 112 HOH HOH . D 4 HOH A 57 557 69 HOH HOH . D 4 HOH A 58 558 57 HOH HOH . D 4 HOH A 59 559 39 HOH HOH . D 4 HOH A 60 560 18 HOH HOH . D 4 HOH A 61 561 29 HOH HOH . D 4 HOH A 62 562 88 HOH HOH . D 4 HOH A 63 563 27 HOH HOH . D 4 HOH A 64 564 63 HOH HOH . D 4 HOH A 65 565 116 HOH HOH . D 4 HOH A 66 566 51 HOH HOH . D 4 HOH A 67 567 31 HOH HOH . D 4 HOH A 68 568 82 HOH HOH . D 4 HOH A 69 569 7 HOH HOH . D 4 HOH A 70 570 12 HOH HOH . D 4 HOH A 71 571 109 HOH HOH . D 4 HOH A 72 572 74 HOH HOH . D 4 HOH A 73 573 86 HOH HOH . D 4 HOH A 74 574 23 HOH HOH . D 4 HOH A 75 575 95 HOH HOH . D 4 HOH A 76 576 92 HOH HOH . D 4 HOH A 77 577 90 HOH HOH . D 4 HOH A 78 578 78 HOH HOH . D 4 HOH A 79 579 65 HOH HOH . D 4 HOH A 80 580 4 HOH HOH . D 4 HOH A 81 581 71 HOH HOH . D 4 HOH A 82 582 13 HOH HOH . D 4 HOH A 83 583 48 HOH HOH . D 4 HOH A 84 584 124 HOH HOH . D 4 HOH A 85 585 24 HOH HOH . D 4 HOH A 86 586 89 HOH HOH . D 4 HOH A 87 587 93 HOH HOH . D 4 HOH A 88 588 46 HOH HOH . D 4 HOH A 89 589 5 HOH HOH . D 4 HOH A 90 590 125 HOH HOH . D 4 HOH A 91 591 107 HOH HOH . D 4 HOH A 92 592 91 HOH HOH . D 4 HOH A 93 593 21 HOH HOH . D 4 HOH A 94 594 114 HOH HOH . D 4 HOH A 95 595 100 HOH HOH . D 4 HOH A 96 596 49 HOH HOH . D 4 HOH A 97 597 26 HOH HOH . D 4 HOH A 98 598 53 HOH HOH . D 4 HOH A 99 599 64 HOH HOH . D 4 HOH A 100 600 119 HOH HOH . D 4 HOH A 101 601 73 HOH HOH . D 4 HOH A 102 602 96 HOH HOH . D 4 HOH A 103 603 84 HOH HOH . D 4 HOH A 104 604 67 HOH HOH . D 4 HOH A 105 605 105 HOH HOH . D 4 HOH A 106 606 99 HOH HOH . D 4 HOH A 107 607 111 HOH HOH . D 4 HOH A 108 608 61 HOH HOH . D 4 HOH A 109 609 76 HOH HOH . D 4 HOH A 110 610 115 HOH HOH . D 4 HOH A 111 611 52 HOH HOH . D 4 HOH A 112 612 101 HOH HOH . D 4 HOH A 113 613 50 HOH HOH . D 4 HOH A 114 614 122 HOH HOH . D 4 HOH A 115 615 87 HOH HOH . D 4 HOH A 116 616 77 HOH HOH . D 4 HOH A 117 617 68 HOH HOH . D 4 HOH A 118 618 120 HOH HOH . D 4 HOH A 119 619 103 HOH HOH . D 4 HOH A 120 620 104 HOH HOH . D 4 HOH A 121 621 28 HOH HOH . D 4 HOH A 122 622 121 HOH HOH . D 4 HOH A 123 623 83 HOH HOH . D 4 HOH A 124 624 98 HOH HOH . D 4 HOH A 125 625 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 X70 . . . B 2 -19.642 15.702 -26.607 1 29.8 ? N1 X70 401 A 1 HETATM 2 N N3 X70 . . . B 2 -18.006 13.41 -24.409 1 34.42 ? N3 X70 401 A 1 HETATM 3 C C4 X70 . . . B 2 -20.793 17.076 -25.073 1 34.78 ? C4 X70 401 A 1 HETATM 4 C C5 X70 . . . B 2 -19.623 17.911 -24.644 1 35.21 ? C5 X70 401 A 1 HETATM 5 C C6 X70 . . . B 2 -18.768 18.511 -25.738 1 36.36 ? C6 X70 401 A 1 HETATM 6 C C7 X70 . . . B 2 -19.802 18.81 -23.427 1 37.29 ? C7 X70 401 A 1 HETATM 7 C C8 X70 . . . B 2 -20.813 16.584 -26.498 1 33.09 ? C8 X70 401 A 1 HETATM 8 C C10 X70 . . . B 2 -19.972 15.372 -29.008 1 32.55 ? C10 X70 401 A 1 HETATM 9 C C13 X70 . . . B 2 -21.441 13.4 -28.546 1 31.42 ? C13 X70 401 A 1 HETATM 10 C C15 X70 . . . B 2 -19.445 17.189 -30.506 1 43.48 ? C15 X70 401 A 1 HETATM 11 C C17 X70 . . . B 2 -18.087 12.045 -23.893 1 35.84 ? C17 X70 401 A 1 HETATM 12 C C20 X70 . . . B 2 -20.39 11.928 -20.453 1 71.89 ? C20 X70 401 A 1 HETATM 13 C C21 X70 . . . B 2 -21.297 10.732 -20.118 1 79.61 ? C21 X70 401 A 1 HETATM 14 C C22 X70 . . . B 2 -20.036 9.854 -20.137 1 71.87 ? C22 X70 401 A 1 HETATM 15 C C24 X70 . . . B 2 -17.522 10.977 -26.149 1 34.48 ? C24 X70 401 A 1 HETATM 16 C C26 X70 . . . B 2 -18.957 9.79 -27.829 1 32.56 ? C26 X70 401 A 1 HETATM 17 C C28 X70 . . . B 2 -16.372 10.331 -26.875 1 36.85 ? C28 X70 401 A 1 HETATM 18 C C1 X70 . . . B 2 -19.066 14.022 -24.938 1 33.86 ? C1 X70 401 A 1 HETATM 19 O O1 X70 . . . B 2 -20.101 13.421 -25.147 1 31.85 ? O1 X70 401 A 1 HETATM 20 C C2 X70 . . . B 2 -18.955 15.477 -25.345 1 32.27 ? C2 X70 401 A 1 HETATM 21 N N2 X70 . . . B 2 -19.086 16.061 -29.933 1 33.04 ? N2 X70 401 A 1 HETATM 22 O O2 X70 . . . B 2 -20.464 17.808 -30.286 1 38.66 ? O2 X70 401 A 1 HETATM 23 C C3 X70 . . . B 2 -19.63 16.425 -24.362 1 32.54 ? C3 X70 401 A 1 HETATM 24 O O3 X70 . . . B 2 -18.207 14.459 -27.73 1 31.59 ? O3 X70 401 A 1 HETATM 25 N N4 X70 . . . B 2 -19.384 10.939 -20.899 1 71.37 ? N4 X70 401 A 1 HETATM 26 O O4 X70 . . . B 2 -18.71 13.275 -21.913 1 44.29 ? O4 X70 401 A 1 HETATM 27 N N5 X70 . . . B 2 -16.588 9.287 -27.667 1 33.91 ? N5 X70 401 A 1 HETATM 28 O O5 X70 . . . B 2 -17.707 9.898 -21.869 1 49.73 ? O5 X70 401 A 1 HETATM 29 O O6 X70 . . . B 2 -15.237 10.788 -26.705 1 34.28 ? O6 X70 401 A 1 HETATM 30 C C9 X70 . . . B 2 -19.195 15.139 -27.722 1 27.92 ? C9 X70 401 A 1 HETATM 31 C C11 X70 . . . B 2 -20.568 14.073 -29.606 1 30.66 ? C11 X70 401 A 1 HETATM 32 C C12 X70 . . . B 2 -21.424 14.476 -30.815 1 35.18 ? C12 X70 401 A 1 HETATM 33 C C14 X70 . . . B 2 -19.484 13.09 -30.055 1 30.91 ? C14 X70 401 A 1 HETATM 34 C C16 X70 . . . B 2 -18.464 17.727 -31.551 1 51.95 ? C16 X70 401 A 1 HETATM 35 C C18 X70 . . . B 2 -17.878 12.211 -22.374 1 42.83 ? C18 X70 401 A 1 HETATM 36 C C19 X70 . . . B 2 -18.31 10.931 -21.674 1 48.93 ? C19 X70 401 A 1 HETATM 37 C C23 X70 . . . B 2 -17.13 11.137 -24.671 1 35.25 ? C23 X70 401 A 1 HETATM 38 C C25 X70 . . . B 2 -18.861 10.267 -26.396 1 37.1 ? C25 X70 401 A 1 HETATM 39 C C27 X70 . . . B 2 -17.888 8.743 -28.035 1 31.84 ? C27 X70 401 A 1 HETATM 40 F F1 X70 . . . B 2 -17.23 17.372 -31.374 1 55.4 ? F1 X70 401 A 1 HETATM 41 F F2 X70 . . . B 2 -18.758 17.297 -32.78 1 66.95 ? F2 X70 401 A 1 HETATM 42 F F3 X70 . . . B 2 -18.351 19.03 -31.423 1 58.88 ? F3 X70 401 A 1 HETATM 43 F F4 X70 . . . B 2 -21.909 10.768 -18.911 1 86.18 ? F4 X70 401 A 1 HETATM 44 F F5 X70 . . . B 2 -22.233 10.419 -21.064 1 86.12 ? F5 X70 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 222 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #