data_8F00 # _model_server_result.job_id Y8k-wFW7obUcvvNzGENlLg _model_server_result.datetime_utc '2024-11-13 07:37:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f00 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":209}' # _entry.id 8F00 # _exptl.entry_id 8F00 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8F00 _cell.length_a 77.794 _cell.length_b 77.794 _cell.length_c 37.127 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F00 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc1 A O SER 60 A SER 60 1_555 I NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc2 A O CYS 64 A CYS 64 1_555 I NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc3 A OG SER 72 A SER 72 1_555 I NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc4 A O ARG 73 A ARG 73 1_555 I NA NA . A NA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc5 I NA NA . A NA 208 1_555 N O HOH . A HOH 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc6 I NA NA . A NA 208 1_555 N O HOH . A HOH 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8F00 _atom_sites.fract_transf_matrix[1][1] 0.012854 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012854 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026935 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 201 201 CL CL . C 2 CL A 1 202 202 CL CL . D 2 CL A 1 203 203 CL CL . E 2 CL A 1 204 204 CL CL . F 2 CL A 1 205 205 CL CL . G 2 CL A 1 206 207 CL CL . H 2 CL A 1 207 208 CL CL . I 3 NA A 1 208 209 NA NA . J 4 EDO A 1 209 210 EDO EDO . K 2 CL A 1 210 211 CL CL . L 2 CL A 1 211 212 CL CL . M 2 CL A 1 212 214 CL CL . N 5 HOH A 1 301 88 HOH HOH . N 5 HOH A 2 302 89 HOH HOH . N 5 HOH A 3 303 56 HOH HOH . N 5 HOH A 4 304 62 HOH HOH . N 5 HOH A 5 305 21 HOH HOH . N 5 HOH A 6 306 74 HOH HOH . N 5 HOH A 7 307 45 HOH HOH . N 5 HOH A 8 308 3 HOH HOH . N 5 HOH A 9 309 26 HOH HOH . N 5 HOH A 10 310 18 HOH HOH . N 5 HOH A 11 311 42 HOH HOH . N 5 HOH A 12 312 10 HOH HOH . N 5 HOH A 13 313 65 HOH HOH . N 5 HOH A 14 314 39 HOH HOH . N 5 HOH A 15 315 83 HOH HOH . N 5 HOH A 16 316 1 HOH HOH . N 5 HOH A 17 317 4 HOH HOH . N 5 HOH A 18 318 27 HOH HOH . N 5 HOH A 19 319 82 HOH HOH . N 5 HOH A 20 320 35 HOH HOH . N 5 HOH A 21 321 49 HOH HOH . N 5 HOH A 22 322 41 HOH HOH . N 5 HOH A 23 323 61 HOH HOH . N 5 HOH A 24 324 60 HOH HOH . N 5 HOH A 25 325 2 HOH HOH . N 5 HOH A 26 326 67 HOH HOH . N 5 HOH A 27 327 85 HOH HOH . N 5 HOH A 28 328 25 HOH HOH . N 5 HOH A 29 329 9 HOH HOH . N 5 HOH A 30 330 48 HOH HOH . N 5 HOH A 31 331 7 HOH HOH . N 5 HOH A 32 332 33 HOH HOH . N 5 HOH A 33 333 31 HOH HOH . N 5 HOH A 34 334 23 HOH HOH . N 5 HOH A 35 335 38 HOH HOH . N 5 HOH A 36 336 24 HOH HOH . N 5 HOH A 37 337 84 HOH HOH . N 5 HOH A 38 338 29 HOH HOH . N 5 HOH A 39 339 63 HOH HOH . N 5 HOH A 40 340 20 HOH HOH . N 5 HOH A 41 341 59 HOH HOH . N 5 HOH A 42 342 17 HOH HOH . N 5 HOH A 43 343 6 HOH HOH . N 5 HOH A 44 344 51 HOH HOH . N 5 HOH A 45 345 77 HOH HOH . N 5 HOH A 46 346 13 HOH HOH . N 5 HOH A 47 347 28 HOH HOH . N 5 HOH A 48 348 34 HOH HOH . N 5 HOH A 49 349 50 HOH HOH . N 5 HOH A 50 350 5 HOH HOH . N 5 HOH A 51 351 32 HOH HOH . N 5 HOH A 52 352 68 HOH HOH . N 5 HOH A 53 353 55 HOH HOH . N 5 HOH A 54 354 58 HOH HOH . N 5 HOH A 55 355 40 HOH HOH . N 5 HOH A 56 356 79 HOH HOH . N 5 HOH A 57 357 52 HOH HOH . N 5 HOH A 58 358 11 HOH HOH . N 5 HOH A 59 359 81 HOH HOH . N 5 HOH A 60 360 57 HOH HOH . N 5 HOH A 61 361 80 HOH HOH . N 5 HOH A 62 362 22 HOH HOH . N 5 HOH A 63 363 14 HOH HOH . N 5 HOH A 64 364 64 HOH HOH . N 5 HOH A 65 365 12 HOH HOH . N 5 HOH A 66 366 30 HOH HOH . N 5 HOH A 67 367 8 HOH HOH . N 5 HOH A 68 368 86 HOH HOH . N 5 HOH A 69 369 76 HOH HOH . N 5 HOH A 70 370 43 HOH HOH . N 5 HOH A 71 371 36 HOH HOH . N 5 HOH A 72 372 72 HOH HOH . N 5 HOH A 73 373 71 HOH HOH . N 5 HOH A 74 374 37 HOH HOH . N 5 HOH A 75 375 87 HOH HOH . N 5 HOH A 76 376 16 HOH HOH . N 5 HOH A 77 377 44 HOH HOH . N 5 HOH A 78 378 73 HOH HOH . N 5 HOH A 79 379 78 HOH HOH . N 5 HOH A 80 380 19 HOH HOH . N 5 HOH A 81 381 15 HOH HOH . N 5 HOH A 82 382 54 HOH HOH . N 5 HOH A 83 383 46 HOH HOH . N 5 HOH A 84 384 70 HOH HOH . N 5 HOH A 85 385 47 HOH HOH . N 5 HOH A 86 386 66 HOH HOH . N 5 HOH A 87 387 69 HOH HOH . N 5 HOH A 88 388 75 HOH HOH . N 5 HOH A 89 389 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . J 4 17.959 35.825 -6.565 1 52.18 0 C1 EDO 209 A 1 HETATM 2 O O1 EDO . . . J 4 17.759 34.721 -5.785 1 31.61 0 O1 EDO 209 A 1 HETATM 3 C C2 EDO . . . J 4 16.98 36.651 -5.977 1 58.24 0 C2 EDO 209 A 1 HETATM 4 O O2 EDO . . . J 4 15.744 36.124 -6.417 1 73.72 0 O2 EDO 209 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #