data_8F02 # _model_server_result.job_id 1ZX-MHsmHWUNflnohBbLjg _model_server_result.datetime_utc '2024-11-14 20:48:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f02 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8F02 # _exptl.entry_id 8F02 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 629.711 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,2S,5S)-N-{(2S,3R)-4-(3,3-dimethylazetidin-1-yl)-3-hydroxy-4-oxo-1-[(3S)-2-oxopiperidin-3-yl]butan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8F02 _cell.length_a 45.649 _cell.length_b 63.231 _cell.length_c 103.798 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F02 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C18 _struct_conn.ptnr2_label_comp_id X6T _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id X6T _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.845 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C30 H46 F3 N5 O6' _chem_comp.formula_weight 629.711 _chem_comp.id X6T _chem_comp.mon_nstd_flag . _chem_comp.name (1R,2S,5S)-N-{(2S,3R)-4-(3,3-dimethylazetidin-1-yl)-3-hydroxy-4-oxo-1-[(3S)-2-oxopiperidin-3-yl]butan-2-yl}-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F1 C16 X6T sing 376 n n F3 C16 X6T sing 377 n n C16 F2 X6T sing 378 n n C16 C15 X6T sing 379 n n C13 C11 X6T sing 380 n n C15 O2 X6T doub 381 n n C15 N2 X6T sing 382 n n C12 C11 X6T sing 383 n n N2 C10 X6T sing 384 n n C11 C10 X6T sing 385 n n C11 C14 X6T sing 386 n n C10 C9 X6T sing 387 n n C29 C28 X6T sing 388 n n C29 N5 X6T sing 389 n n C28 C27 X6T sing 390 n n N5 C30 X6T sing 391 n n O3 C9 X6T doub 392 n n C9 N1 X6T sing 393 n n C30 O6 X6T doub 394 n n C30 C26 X6T sing 395 n n N1 C8 X6T sing 396 n n N1 C2 X6T sing 397 n n C8 C4 X6T sing 398 n n C27 C26 X6T sing 399 n n C26 C25 X6T sing 400 n n C6 C5 X6T sing 401 n n C2 C1 X6T sing 402 n n C2 C3 X6T sing 403 n n O1 C1 X6T doub 404 n n C4 C5 X6T sing 405 n n C4 C3 X6T sing 406 n n C1 N3 X6T sing 407 n n C25 C17 X6T sing 408 n n C5 C3 X6T sing 409 n n C5 C7 X6T sing 410 n n N3 C17 X6T sing 411 n n C17 C18 X6T sing 412 n n C18 O5 X6T sing 413 n n C18 C19 X6T sing 414 n n C22 C21 X6T sing 415 n n O4 C19 X6T doub 416 n n C19 N4 X6T sing 417 n n N4 C20 X6T sing 418 n n N4 C24 X6T sing 419 n n C20 C21 X6T sing 420 n n C21 C24 X6T sing 421 n n C21 C23 X6T sing 422 n n N3 H1 X6T sing 423 n n C4 H2 X6T sing 424 n n C6 H3 X6T sing 425 n n C6 H4 X6T sing 426 n n C6 H5 X6T sing 427 n n C7 H6 X6T sing 428 n n C7 H7 X6T sing 429 n n C7 H8 X6T sing 430 n n C8 H9 X6T sing 431 n n C8 H10 X6T sing 432 n n C10 H11 X6T sing 433 n n C13 H12 X6T sing 434 n n C13 H13 X6T sing 435 n n C13 H14 X6T sing 436 n n C17 H15 X6T sing 437 n n C20 H16 X6T sing 438 n n C20 H17 X6T sing 439 n n C22 H18 X6T sing 440 n n C22 H19 X6T sing 441 n n C22 H20 X6T sing 442 n n C24 H21 X6T sing 443 n n C24 H22 X6T sing 444 n n C26 H23 X6T sing 445 n n C28 H24 X6T sing 446 n n C28 H25 X6T sing 447 n n C2 H26 X6T sing 448 n n N2 H27 X6T sing 449 n n C3 H28 X6T sing 450 n n N5 H29 X6T sing 451 n n O5 H30 X6T sing 452 n n C12 H31 X6T sing 453 n n C12 H32 X6T sing 454 n n C12 H33 X6T sing 455 n n C14 H34 X6T sing 456 n n C14 H35 X6T sing 457 n n C14 H36 X6T sing 458 n n C18 H37 X6T sing 459 n n C23 H38 X6T sing 460 n n C23 H39 X6T sing 461 n n C23 H40 X6T sing 462 n n C25 H41 X6T sing 463 n n C25 H42 X6T sing 464 n n C27 H43 X6T sing 465 n n C27 H44 X6T sing 466 n n C29 H45 X6T sing 467 n n C29 H46 X6T sing 468 n n # _atom_sites.entry_id 8F02 _atom_sites.fract_transf_matrix[1][1] 0.021906 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015815 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009634 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 X6T A 1 401 401 X6T LIG . C 3 HOH A 1 501 34 HOH HOH . C 3 HOH A 2 502 21 HOH HOH . C 3 HOH A 3 503 8 HOH HOH . C 3 HOH A 4 504 16 HOH HOH . C 3 HOH A 5 505 18 HOH HOH . C 3 HOH A 6 506 9 HOH HOH . C 3 HOH A 7 507 6 HOH HOH . C 3 HOH A 8 508 14 HOH HOH . C 3 HOH A 9 509 33 HOH HOH . C 3 HOH A 10 510 28 HOH HOH . C 3 HOH A 11 511 42 HOH HOH . C 3 HOH A 12 512 39 HOH HOH . C 3 HOH A 13 513 11 HOH HOH . C 3 HOH A 14 514 49 HOH HOH . C 3 HOH A 15 515 37 HOH HOH . C 3 HOH A 16 516 38 HOH HOH . C 3 HOH A 17 517 4 HOH HOH . C 3 HOH A 18 518 5 HOH HOH . C 3 HOH A 19 519 7 HOH HOH . C 3 HOH A 20 520 23 HOH HOH . C 3 HOH A 21 521 25 HOH HOH . C 3 HOH A 22 522 12 HOH HOH . C 3 HOH A 23 523 15 HOH HOH . C 3 HOH A 24 524 35 HOH HOH . C 3 HOH A 25 525 2 HOH HOH . C 3 HOH A 26 526 41 HOH HOH . C 3 HOH A 27 527 1 HOH HOH . C 3 HOH A 28 528 47 HOH HOH . C 3 HOH A 29 529 45 HOH HOH . C 3 HOH A 30 530 3 HOH HOH . C 3 HOH A 31 531 19 HOH HOH . C 3 HOH A 32 532 46 HOH HOH . C 3 HOH A 33 533 50 HOH HOH . C 3 HOH A 34 534 36 HOH HOH . C 3 HOH A 35 535 22 HOH HOH . C 3 HOH A 36 536 29 HOH HOH . C 3 HOH A 37 537 10 HOH HOH . C 3 HOH A 38 538 40 HOH HOH . C 3 HOH A 39 539 13 HOH HOH . C 3 HOH A 40 540 31 HOH HOH . C 3 HOH A 41 541 26 HOH HOH . C 3 HOH A 42 542 17 HOH HOH . C 3 HOH A 43 543 32 HOH HOH . C 3 HOH A 44 544 44 HOH HOH . C 3 HOH A 45 545 24 HOH HOH . C 3 HOH A 46 546 48 HOH HOH . C 3 HOH A 47 547 30 HOH HOH . C 3 HOH A 48 548 20 HOH HOH . C 3 HOH A 49 549 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 X6T . . . B 2 -19.739 15.756 -26.69 1 41.25 ? N1 X6T 401 A 1 HETATM 2 N N3 X6T . . . B 2 -18.195 13.427 -24.619 1 41 ? N3 X6T 401 A 1 HETATM 3 C C4 X6T . . . B 2 -20.84 17.166 -25.154 1 47.67 ? C4 X6T 401 A 1 HETATM 4 C C5 X6T . . . B 2 -19.608 17.899 -24.678 1 45.94 ? C5 X6T 401 A 1 HETATM 5 C C6 X6T . . . B 2 -18.673 18.459 -25.726 1 48.38 ? C6 X6T 401 A 1 HETATM 6 C C7 X6T . . . B 2 -19.717 18.783 -23.452 1 51.64 ? C7 X6T 401 A 1 HETATM 7 C C8 X6T . . . B 2 -20.919 16.625 -26.56 1 44.79 ? C8 X6T 401 A 1 HETATM 8 C C10 X6T . . . B 2 -20.065 15.379 -29.078 1 48.24 ? C10 X6T 401 A 1 HETATM 9 C C13 X6T . . . B 2 -21.58 14.515 -30.829 1 45.34 ? C13 X6T 401 A 1 HETATM 10 C C15 X6T . . . B 2 -19.423 17.228 -30.535 1 52.89 ? C15 X6T 401 A 1 HETATM 11 C C17 X6T . . . B 2 -18.178 12.08 -24.07 1 48.72 ? C17 X6T 401 A 1 HETATM 12 C C20 X6T . . . B 2 -20.815 11.961 -21.392 1 82.63 ? C20 X6T 401 A 1 HETATM 13 C C21 X6T . . . B 2 -21.777 10.789 -21.051 1 85.59 ? C21 X6T 401 A 1 HETATM 14 C C22 X6T . . . B 2 -22.804 10.491 -22.138 1 80.64 ? C22 X6T 401 A 1 HETATM 15 C C24 X6T . . . B 2 -20.56 9.837 -21.011 1 83.37 ? C24 X6T 401 A 1 HETATM 16 C C26 X6T . . . B 2 -17.555 11.051 -26.333 1 48.92 ? C26 X6T 401 A 1 HETATM 17 C C28 X6T . . . B 2 -19.14 9.941 -27.97 1 49.27 ? C28 X6T 401 A 1 HETATM 18 C C1 X6T . . . B 2 -19.286 13.994 -25.124 1 46.77 ? C1 X6T 401 A 1 HETATM 19 O O1 X6T . . . B 2 -20.333 13.386 -25.349 1 47.33 ? O1 X6T 401 A 1 HETATM 20 C C2 X6T . . . B 2 -19.082 15.469 -25.434 1 44.56 ? C2 X6T 401 A 1 HETATM 21 N N2 X6T . . . B 2 -19.172 16.035 -30.023 1 48.41 ? N2 X6T 401 A 1 HETATM 22 O O2 X6T . . . B 2 -20.36 17.952 -30.286 1 51.93 ? O2 X6T 401 A 1 HETATM 23 C C3 X6T . . . B 2 -19.747 16.417 -24.44 1 47.57 ? C3 X6T 401 A 1 HETATM 24 O O3 X6T . . . B 2 -18.164 14.64 -27.811 1 41.66 ? O3 X6T 401 A 1 HETATM 25 N N4 X6T . . . B 2 -19.731 10.962 -21.487 1 79.86 ? N4 X6T 401 A 1 HETATM 26 O O4 X6T . . . B 2 -17.752 10.026 -21.902 1 55.66 ? O4 X6T 401 A 1 HETATM 27 N N5 X6T . . . B 2 -16.749 9.382 -27.934 1 52.68 ? N5 X6T 401 A 1 HETATM 28 O O5 X6T . . . B 2 -18.634 13.41 -22.07 1 56.07 ? O5 X6T 401 A 1 HETATM 29 O O6 X6T . . . B 2 -15.257 10.629 -26.802 1 44.76 ? O6 X6T 401 A 1 HETATM 30 C C9 X6T . . . B 2 -19.242 15.214 -27.801 1 45.62 ? C9 X6T 401 A 1 HETATM 31 C C11 X6T . . . B 2 -20.699 14.08 -29.649 1 46.01 ? C11 X6T 401 A 1 HETATM 32 C C12 X6T . . . B 2 -19.673 13.043 -30.121 1 47.17 ? C12 X6T 401 A 1 HETATM 33 C C14 X6T . . . B 2 -21.581 13.426 -28.589 1 47.72 ? C14 X6T 401 A 1 HETATM 34 C C16 X6T . . . B 2 -18.387 17.702 -31.543 1 61.23 ? C16 X6T 401 A 1 HETATM 35 C C18 X6T . . . B 2 -17.931 12.268 -22.554 1 54.39 ? C18 X6T 401 A 1 HETATM 36 C C19 X6T . . . B 2 -18.471 11.004 -21.916 1 60.92 ? C19 X6T 401 A 1 HETATM 37 C C23 X6T . . . B 2 -22.44 10.888 -19.684 1 86.14 ? C23 X6T 401 A 1 HETATM 38 C C25 X6T . . . B 2 -17.175 11.222 -24.854 1 46.37 ? C25 X6T 401 A 1 HETATM 39 C C27 X6T . . . B 2 -18.938 10.41 -26.544 1 49.79 ? C27 X6T 401 A 1 HETATM 40 C C29 X6T . . . B 2 -18.084 8.908 -28.295 1 50.22 ? C29 X6T 401 A 1 HETATM 41 C C30 X6T . . . B 2 -16.441 10.33 -27.05 1 50.76 ? C30 X6T 401 A 1 HETATM 42 F F1 X6T . . . B 2 -18.433 16.999 -32.672 1 73.44 ? F1 X6T 401 A 1 HETATM 43 F F2 X6T . . . B 2 -17.172 17.512 -31.069 1 76.89 ? F2 X6T 401 A 1 HETATM 44 F F3 X6T . . . B 2 -18.521 18.991 -31.75 1 74.25 ? F3 X6T 401 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 212 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 44 #