data_8F0J # _model_server_result.job_id iXpZ6uE9GZESV31PEKGyTw _model_server_result.datetime_utc '2024-11-21 22:35:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f0j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":101}' # _entry.id 8F0J # _exptl.entry_id 8F0J _exptl.method 'ELECTRON MICROSCOPY' # _entity.details 'Its an analogue derived from pramlintide by adding a lipid modification on the position 21 of lysine' _entity.formula_weight 385.538 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-hexadecanoyl-L-glutamic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8F0J _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F0J _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2 P CYS 2 1_555 A SG CYS 7 P CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 B SG CYS 63 R CYS 55 1_555 B SG CYS 89 R CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 B SG CYS 80 R CYS 72 1_555 B SG CYS 120 R CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 103 R CYS 95 1_555 B SG CYS 142 R CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 B SG CYS 227 R CYS 219 1_555 B SG CYS 297 R CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 F SG CYS 22 N CYS 22 1_555 F SG CYS 96 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 F SG CYS 99 N CYS 99 1_555 F SG CYS 107 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A NZ LYS 21 P LYS 21 1_555 G C07 D6M . P D6M 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale2 A C TYR 37 P TYR 37 1_555 A N NH2 38 P NH2 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 B ND2 ASN 81 R ASN 73 1_555 H C1 NAG . R NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale4 B ND2 ASN 138 R ASN 130 1_555 I C1 NAG . R NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? # _chem_comp.formula 'C21 H39 N O5' _chem_comp.formula_weight 385.538 _chem_comp.id D6M _chem_comp.mon_nstd_flag . _chem_comp.name 'N-hexadecanoyl-L-glutamic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O01 C02 D6M doub 83 n n C02 N03 D6M sing 84 n n C02 C12 D6M sing 85 n n N03 C04 D6M sing 86 n n C04 C05 D6M sing 87 n n C04 C09 D6M sing 88 n n C05 C06 D6M sing 89 n n C06 C07 D6M sing 90 n n C07 O08 D6M doub 91 n n C07 OXT D6M sing 92 n n C09 O10 D6M doub 93 n n C09 O11 D6M sing 94 n n C12 C13 D6M sing 95 n n C13 C14 D6M sing 96 n n C14 C15 D6M sing 97 n n C15 C16 D6M sing 98 n n C16 C17 D6M sing 99 n n C17 C18 D6M sing 100 n n C18 C19 D6M sing 101 n n C19 C20 D6M sing 102 n n C20 C21 D6M sing 103 n n C21 C22 D6M sing 104 n n C22 C23 D6M sing 105 n n C23 C24 D6M sing 106 n n C24 C25 D6M sing 107 n n C25 C26 D6M sing 108 n n N03 H03 D6M sing 109 n n C12 H121 D6M sing 110 n n C12 H122 D6M sing 111 n n C04 H04 D6M sing 112 n n C05 H051 D6M sing 113 n n C05 H052 D6M sing 114 n n C06 H061 D6M sing 115 n n C06 H062 D6M sing 116 n n OXT HX0 D6M sing 117 n n O11 H11 D6M sing 118 n n C13 H131 D6M sing 119 n n C13 H132 D6M sing 120 n n C14 H141 D6M sing 121 n n C14 H142 D6M sing 122 n n C15 H151 D6M sing 123 n n C15 H152 D6M sing 124 n n C16 H161 D6M sing 125 n n C16 H162 D6M sing 126 n n C17 H171 D6M sing 127 n n C17 H172 D6M sing 128 n n C18 H181 D6M sing 129 n n C18 H182 D6M sing 130 n n C19 H191 D6M sing 131 n n C19 H192 D6M sing 132 n n C20 H201 D6M sing 133 n n C20 H202 D6M sing 134 n n C21 H211 D6M sing 135 n n C21 H212 D6M sing 136 n n C22 H221 D6M sing 137 n n C22 H222 D6M sing 138 n n C23 H231 D6M sing 139 n n C23 H232 D6M sing 140 n n C24 H241 D6M sing 141 n n C24 H242 D6M sing 142 n n C25 H251 D6M sing 143 n n C25 H252 D6M sing 144 n n C26 H261 D6M sing 145 n n C26 H262 D6M sing 146 n n C26 H263 D6M sing 147 n n # _atom_sites.entry_id 8F0J _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 7 D6M P 1 101 21 D6M L6M . H 8 NAG R 1 501 410 NAG NAG . I 8 NAG R 1 502 411 NAG NAG . J 9 PTY R 1 503 1 PTY PTY . K 9 PTY R 1 504 2 PTY PTY . L 10 PLM R 1 505 4 PLM PLM . M 11 Y01 R 1 506 5 Y01 Y01 . N 11 Y01 R 1 507 6 Y01 Y01 . O 9 PTY R 1 508 7 PTY PTY . P 12 P42 R 1 509 8 P42 P42 . Q 10 PLM R 1 510 9 PLM PLM . R 10 PLM R 1 511 10 PLM PLM . S 10 PLM R 1 512 11 PLM PLM . T 10 PLM R 1 513 12 PLM PLM . U 10 PLM R 1 514 13 PLM PLM . V 10 PLM R 1 515 14 PLM PLM . W 10 PLM R 1 516 15 PLM PLM . X 13 HOH P 1 201 10 HOH HOH . X 13 HOH P 2 202 17 HOH HOH . X 13 HOH P 3 203 15 HOH HOH . X 13 HOH P 4 204 14 HOH HOH . X 13 HOH P 5 205 16 HOH HOH . X 13 HOH P 6 206 19 HOH HOH . X 13 HOH P 7 207 9 HOH HOH . X 13 HOH P 8 208 1 HOH HOH . X 13 HOH P 9 209 18 HOH HOH . X 13 HOH P 10 210 20 HOH HOH . Y 13 HOH R 1 601 22 HOH HOH . Y 13 HOH R 2 602 2 HOH HOH . Y 13 HOH R 3 603 28 HOH HOH . Y 13 HOH R 4 604 21 HOH HOH . Y 13 HOH R 5 605 6 HOH HOH . Y 13 HOH R 6 606 24 HOH HOH . Y 13 HOH R 7 607 3 HOH HOH . Y 13 HOH R 8 608 29 HOH HOH . Y 13 HOH R 9 609 7 HOH HOH . Y 13 HOH R 10 610 26 HOH HOH . Y 13 HOH R 11 611 27 HOH HOH . Y 13 HOH R 12 612 8 HOH HOH . Y 13 HOH R 13 613 23 HOH HOH . Y 13 HOH R 14 614 4 HOH HOH . Z 13 HOH A 1 401 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 D6M . . . G 7 133.05 84.798 89.312 1 28.66 ? O01 D6M 101 P 1 HETATM 2 C C02 D6M . . . G 7 132.258 84.644 88.446 1 26.43 ? C02 D6M 101 P 1 HETATM 3 N N03 D6M . . . G 7 132.698 84.459 87.075 1 24.98 ? N03 D6M 101 P 1 HETATM 4 C C04 D6M . . . G 7 131.701 84.271 86.035 1 24.31 ? C04 D6M 101 P 1 HETATM 5 C C05 D6M . . . G 7 131.972 85.198 84.853 1 24.05 ? C05 D6M 101 P 1 HETATM 6 C C06 D6M . . . G 7 133.394 85.736 84.738 1 25.34 ? C06 D6M 101 P 1 HETATM 7 C C07 D6M . . . G 7 133.667 86.167 83.299 1 26.97 ? C07 D6M 101 P 1 HETATM 8 O O08 D6M . . . G 7 134.772 86.106 82.876 1 26.95 ? O08 D6M 101 P 1 HETATM 9 C C09 D6M . . . G 7 131.679 82.82 85.551 1 25.77 ? C09 D6M 101 P 1 HETATM 10 O O10 D6M . . . G 7 130.775 82.043 85.953 1 28.68 ? O10 D6M 101 P 1 HETATM 11 O O11 D6M . . . G 7 132.553 82.399 84.749 1 28.44 ? O11 D6M 101 P 1 HETATM 12 C C12 D6M . . . G 7 130.766 84.634 88.768 1 23.91 ? C12 D6M 101 P 1 HETATM 13 C C13 D6M . . . G 7 130.447 85.109 90.184 1 25.83 ? C13 D6M 101 P 1 HETATM 14 C C14 D6M . . . G 7 129.477 84.16 90.883 1 22.86 ? C14 D6M 101 P 1 HETATM 15 C C15 D6M . . . G 7 128.147 84.829 91.221 1 24.58 ? C15 D6M 101 P 1 HETATM 16 C C16 D6M . . . G 7 127.545 84.318 92.526 1 23.75 ? C16 D6M 101 P 1 HETATM 17 C C17 D6M . . . G 7 126.43 85.22 93.038 1 26.25 ? C17 D6M 101 P 1 HETATM 18 C C18 D6M . . . G 7 125.337 84.433 93.754 1 22.85 ? C18 D6M 101 P 1 HETATM 19 C C19 D6M . . . G 7 124.843 85.114 95.028 1 25.79 ? C19 D6M 101 P 1 HETATM 20 C C20 D6M . . . G 7 123.318 85.184 95.048 1 23.32 ? C20 D6M 101 P 1 HETATM 21 C C21 D6M . . . G 7 122.733 85.32 96.447 1 25.46 ? C21 D6M 101 P 1 HETATM 22 C C22 D6M . . . G 7 123.68 86.012 97.419 1 24.3 ? C22 D6M 101 P 1 HETATM 23 C C23 D6M . . . G 7 122.945 86.525 98.652 1 24.16 ? C23 D6M 101 P 1 HETATM 24 C C24 D6M . . . G 7 121.531 85.965 98.741 1 23.17 ? C24 D6M 101 P 1 HETATM 25 C C25 D6M . . . G 7 121.184 85.461 100.138 1 25.76 ? C25 D6M 101 P 1 HETATM 26 C C26 D6M . . . G 7 119.779 84.868 100.213 1 26.1 ? C26 D6M 101 P 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 26 #