data_8F0J
#
_model_server_result.job_id            DVXCRITKNxBdlNw28mHlaA 
_model_server_result.datetime_utc      '2024-11-21 23:09:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8f0j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":501}' 
#
_entry.id    8F0J 
#
_exptl.entry_id    8F0J 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8F0J 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8F0J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 H N N 
? 8 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 2 P CYS 2 1_555 A SG CYS 7 P CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf2 B SG CYS 63 R CYS 55 1_555 B SG CYS 89 R CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 B SG CYS 80 R CYS 72 1_555 B SG CYS 120 R CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 B SG CYS 103 R CYS 95 1_555 B SG CYS 142 R CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 B SG CYS 227 R CYS 219 1_555 B SG CYS 297 R CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf6 F SG CYS 22 N CYS 22 1_555 F SG CYS 96 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf7 F SG CYS 99 N CYS 99 1_555 F SG CYS 107 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 A NZ LYS 21 P LYS 21 1_555 G C07 D6M . P D6M 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? 
covale ? covale2 A C TYR 37 P TYR 37 1_555 A N NH2 38 P NH2 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale3 B ND2 ASN 81 R ASN 73 1_555 H C1 NAG . R NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale4 B ND2 ASN 138 R ASN 130 1_555 I C1 NAG . R NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 302 n n 
C1 O1 NAG sing 303 n n 
C1 O5 NAG sing 304 n n 
C1 H1 NAG sing 305 n n 
C2 C3 NAG sing 306 n n 
C2 N2 NAG sing 307 n n 
C2 H2 NAG sing 308 n n 
C3 C4 NAG sing 309 n n 
C3 O3 NAG sing 310 n n 
C3 H3 NAG sing 311 n n 
C4 C5 NAG sing 312 n n 
C4 O4 NAG sing 313 n n 
C4 H4 NAG sing 314 n n 
C5 C6 NAG sing 315 n n 
C5 O5 NAG sing 316 n n 
C5 H5 NAG sing 317 n n 
C6 O6 NAG sing 318 n n 
C6 H61 NAG sing 319 n n 
C6 H62 NAG sing 320 n n 
C7 C8 NAG sing 321 n n 
C7 N2 NAG sing 322 n n 
C7 O7 NAG doub 323 n n 
C8 H81 NAG sing 324 n n 
C8 H82 NAG sing 325 n n 
C8 H83 NAG sing 326 n n 
N2 HN2 NAG sing 327 n n 
O1 HO1 NAG sing 328 n n 
O3 HO3 NAG sing 329 n n 
O4 HO4 NAG sing 330 n n 
O6 HO6 NAG sing 331 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8F0J 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 7 D6M P 1 101 21 D6M L6M . 
H 8 NAG R 1 501 410 NAG NAG . 
I 8 NAG R 1 502 411 NAG NAG . 
J 9 PTY R 1 503 1 PTY PTY . 
K 9 PTY R 1 504 2 PTY PTY . 
L 10 PLM R 1 505 4 PLM PLM . 
M 11 Y01 R 1 506 5 Y01 Y01 . 
N 11 Y01 R 1 507 6 Y01 Y01 . 
O 9 PTY R 1 508 7 PTY PTY . 
P 12 P42 R 1 509 8 P42 P42 . 
Q 10 PLM R 1 510 9 PLM PLM . 
R 10 PLM R 1 511 10 PLM PLM . 
S 10 PLM R 1 512 11 PLM PLM . 
T 10 PLM R 1 513 12 PLM PLM . 
U 10 PLM R 1 514 13 PLM PLM . 
V 10 PLM R 1 515 14 PLM PLM . 
W 10 PLM R 1 516 15 PLM PLM . 
X 13 HOH P 1 201 10 HOH HOH . 
X 13 HOH P 2 202 17 HOH HOH . 
X 13 HOH P 3 203 15 HOH HOH . 
X 13 HOH P 4 204 14 HOH HOH . 
X 13 HOH P 5 205 16 HOH HOH . 
X 13 HOH P 6 206 19 HOH HOH . 
X 13 HOH P 7 207 9 HOH HOH . 
X 13 HOH P 8 208 1 HOH HOH . 
X 13 HOH P 9 209 18 HOH HOH . 
X 13 HOH P 10 210 20 HOH HOH . 
Y 13 HOH R 1 601 22 HOH HOH . 
Y 13 HOH R 2 602 2 HOH HOH . 
Y 13 HOH R 3 603 28 HOH HOH . 
Y 13 HOH R 4 604 21 HOH HOH . 
Y 13 HOH R 5 605 6 HOH HOH . 
Y 13 HOH R 6 606 24 HOH HOH . 
Y 13 HOH R 7 607 3 HOH HOH . 
Y 13 HOH R 8 608 29 HOH HOH . 
Y 13 HOH R 9 609 7 HOH HOH . 
Y 13 HOH R 10 610 26 HOH HOH . 
Y 13 HOH R 11 611 27 HOH HOH . 
Y 13 HOH R 12 612 8 HOH HOH . 
Y 13 HOH R 13 613 23 HOH HOH . 
Y 13 HOH R 14 614 4 HOH HOH . 
Z 13 HOH A 1 401 25 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . H 8 142.856 112.535 40.608 1 22.7 ? C1 NAG 501 R 1 
HETATM 2 C C2 NAG . . . H 8 143.583 111.721 39.539 1 23.44 ? C2 NAG 501 R 1 
HETATM 3 C C3 NAG . . . H 8 143.921 112.605 38.343 1 24.61 ? C3 NAG 501 R 1 
HETATM 4 C C4 NAG . . . H 8 142.67 113.303 37.827 1 22.65 ? C4 NAG 501 R 1 
HETATM 5 C C5 NAG . . . H 8 141.973 114.047 38.963 1 24.97 ? C5 NAG 501 R 1 
HETATM 6 C C6 NAG . . . H 8 140.657 114.661 38.548 1 24.62 ? C6 NAG 501 R 1 
HETATM 7 C C7 NAG . . . H 8 144.82 109.853 40.54 1 26.22 ? C7 NAG 501 R 1 
HETATM 8 C C8 NAG . . . H 8 146.144 109.379 41.059 1 22.87 ? C8 NAG 501 R 1 
HETATM 9 N N2 NAG . . . H 8 144.786 111.106 40.078 1 23.67 ? N2 NAG 501 R 1 
HETATM 10 O O3 NAG . . . H 8 144.495 111.81 37.312 1 25.79 ? O3 NAG 501 R 1 
HETATM 11 O O4 NAG . . . H 8 143.015 114.227 36.802 1 30.38 ? O4 NAG 501 R 1 
HETATM 12 O O5 NAG . . . H 8 141.687 113.141 40.039 1 23.67 ? O5 NAG 501 R 1 
HETATM 13 O O6 NAG . . . H 8 140.741 116.079 38.487 1 28.24 ? O6 NAG 501 R 1 
HETATM 14 O O7 NAG . . . H 8 143.826 109.133 40.541 1 28.76 ? O7 NAG 501 R 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           14 
#