data_8F0J
#
_model_server_result.job_id            EdTfrAfNpi3lgF-z0MUnLQ 
_model_server_result.datetime_utc      '2024-11-21 22:57:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8f0j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":506}' 
#
_entry.id    8F0J 
#
_exptl.entry_id    8F0J 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              486.726 
_entity.id                          11 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHOLESTEROL HEMISUCCINATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8F0J 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8F0J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 11 M N N 
? 11 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 2 P CYS 2 1_555 A SG CYS 7 P CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf2 B SG CYS 63 R CYS 55 1_555 B SG CYS 89 R CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 B SG CYS 80 R CYS 72 1_555 B SG CYS 120 R CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 B SG CYS 103 R CYS 95 1_555 B SG CYS 142 R CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 B SG CYS 227 R CYS 219 1_555 B SG CYS 297 R CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf6 F SG CYS 22 N CYS 22 1_555 F SG CYS 96 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf7 F SG CYS 99 N CYS 99 1_555 F SG CYS 107 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 A NZ LYS 21 P LYS 21 1_555 G C07 D6M . P D6M 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? 
covale ? covale2 A C TYR 37 P TYR 37 1_555 A N NH2 38 P NH2 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale3 B ND2 ASN 81 R ASN 73 1_555 H C1 NAG . R NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale4 B ND2 ASN 138 R ASN 130 1_555 I C1 NAG . R NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
#
_chem_comp.formula           'C31 H50 O4' 
_chem_comp.formula_weight    486.726 
_chem_comp.id                Y01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHOLESTEROL HEMISUCCINATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CBA Y01 sing 790 n n 
CBA CAB Y01 sing 791 n n 
CBA CAN Y01 sing 792 n n 
CAN CAJ Y01 sing 793 n n 
CAJ CAO Y01 sing 794 n n 
CAO CBB Y01 sing 795 n n 
CBB CAC Y01 sing 796 n n 
CBB CBE Y01 sing 797 n n 
CBE CAP Y01 sing 798 n n 
CBE CBI Y01 sing 799 n n 
CAP CAQ Y01 sing 800 n n 
CAQ CBG Y01 sing 801 n n 
CBG CBI Y01 sing 802 n n 
CBG CBD Y01 sing 803 n n 
CBI CAE Y01 sing 804 n n 
CBI CAU Y01 sing 805 n n 
CAU CAS Y01 sing 806 n n 
CAS CBF Y01 sing 807 n n 
CBF CBD Y01 sing 808 n n 
CBF CBH Y01 sing 809 n n 
CBD CAK Y01 sing 810 n n 
CAK CAI Y01 sing 811 n n 
CAI CAZ Y01 doub 812 n n 
CAZ CAV Y01 sing 813 n n 
CAZ CBH Y01 sing 814 n n 
CAV CBC Y01 sing 815 n n 
CBH CAD Y01 sing 816 n n 
CBH CAT Y01 sing 817 n n 
CAT CAR Y01 sing 818 n n 
CAR CBC Y01 sing 819 n n 
CBC OAW Y01 sing 820 n n 
OAW CAY Y01 sing 821 n n 
CAY OAG Y01 doub 822 n n 
CAY CAM Y01 sing 823 n n 
CAM CAL Y01 sing 824 n n 
CAL CAX Y01 sing 825 n n 
CAX OAH Y01 sing 826 n n 
CAX OAF Y01 doub 827 n n 
CAA HAA1 Y01 sing 828 n n 
CAA HAA2 Y01 sing 829 n n 
CAA HAA3 Y01 sing 830 n n 
CBA HBA Y01 sing 831 n n 
CAB HAB1 Y01 sing 832 n n 
CAB HAB2 Y01 sing 833 n n 
CAB HAB3 Y01 sing 834 n n 
CAN HAN1 Y01 sing 835 n n 
CAN HAN2 Y01 sing 836 n n 
CAJ HAJ1 Y01 sing 837 n n 
CAJ HAJ2 Y01 sing 838 n n 
CAO HAO1 Y01 sing 839 n n 
CAO HAO2 Y01 sing 840 n n 
CBB HBB Y01 sing 841 n n 
CAC HAC1 Y01 sing 842 n n 
CAC HAC2 Y01 sing 843 n n 
CAC HAC3 Y01 sing 844 n n 
CBE HBE Y01 sing 845 n n 
CAP HAP1 Y01 sing 846 n n 
CAP HAP2 Y01 sing 847 n n 
CAQ HAQ1 Y01 sing 848 n n 
CAQ HAQ2 Y01 sing 849 n n 
CBG HBG Y01 sing 850 n n 
CBD HBD Y01 sing 851 n n 
CAE HAE1 Y01 sing 852 n n 
CAE HAE2 Y01 sing 853 n n 
CAE HAE3 Y01 sing 854 n n 
CAU HAU1 Y01 sing 855 n n 
CAU HAU2 Y01 sing 856 n n 
CAS HAS1 Y01 sing 857 n n 
CAS HAS2 Y01 sing 858 n n 
CBF HBF Y01 sing 859 n n 
CAK HAK1 Y01 sing 860 n n 
CAK HAK2 Y01 sing 861 n n 
CAI HAI Y01 sing 862 n n 
CAV HAV1 Y01 sing 863 n n 
CAV HAV2 Y01 sing 864 n n 
CBC HBC Y01 sing 865 n n 
CAD HAD1 Y01 sing 866 n n 
CAD HAD2 Y01 sing 867 n n 
CAD HAD3 Y01 sing 868 n n 
CAT HAT1 Y01 sing 869 n n 
CAT HAT2 Y01 sing 870 n n 
CAR HAR1 Y01 sing 871 n n 
CAR HAR2 Y01 sing 872 n n 
CAM HAM1 Y01 sing 873 n n 
CAM HAM2 Y01 sing 874 n n 
CAL HAL1 Y01 sing 875 n n 
CAL HAL2 Y01 sing 876 n n 
OAH HAH Y01 sing 877 n n 
#
_atom_sites.entry_id                     8F0J 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 7 D6M P 1 101 21 D6M L6M . 
H 8 NAG R 1 501 410 NAG NAG . 
I 8 NAG R 1 502 411 NAG NAG . 
J 9 PTY R 1 503 1 PTY PTY . 
K 9 PTY R 1 504 2 PTY PTY . 
L 10 PLM R 1 505 4 PLM PLM . 
M 11 Y01 R 1 506 5 Y01 Y01 . 
N 11 Y01 R 1 507 6 Y01 Y01 . 
O 9 PTY R 1 508 7 PTY PTY . 
P 12 P42 R 1 509 8 P42 P42 . 
Q 10 PLM R 1 510 9 PLM PLM . 
R 10 PLM R 1 511 10 PLM PLM . 
S 10 PLM R 1 512 11 PLM PLM . 
T 10 PLM R 1 513 12 PLM PLM . 
U 10 PLM R 1 514 13 PLM PLM . 
V 10 PLM R 1 515 14 PLM PLM . 
W 10 PLM R 1 516 15 PLM PLM . 
X 13 HOH P 1 201 10 HOH HOH . 
X 13 HOH P 2 202 17 HOH HOH . 
X 13 HOH P 3 203 15 HOH HOH . 
X 13 HOH P 4 204 14 HOH HOH . 
X 13 HOH P 5 205 16 HOH HOH . 
X 13 HOH P 6 206 19 HOH HOH . 
X 13 HOH P 7 207 9 HOH HOH . 
X 13 HOH P 8 208 1 HOH HOH . 
X 13 HOH P 9 209 18 HOH HOH . 
X 13 HOH P 10 210 20 HOH HOH . 
Y 13 HOH R 1 601 22 HOH HOH . 
Y 13 HOH R 2 602 2 HOH HOH . 
Y 13 HOH R 3 603 28 HOH HOH . 
Y 13 HOH R 4 604 21 HOH HOH . 
Y 13 HOH R 5 605 6 HOH HOH . 
Y 13 HOH R 6 606 24 HOH HOH . 
Y 13 HOH R 7 607 3 HOH HOH . 
Y 13 HOH R 8 608 29 HOH HOH . 
Y 13 HOH R 9 609 7 HOH HOH . 
Y 13 HOH R 10 610 26 HOH HOH . 
Y 13 HOH R 11 611 27 HOH HOH . 
Y 13 HOH R 12 612 8 HOH HOH . 
Y 13 HOH R 13 613 23 HOH HOH . 
Y 13 HOH R 14 614 4 HOH HOH . 
Z 13 HOH A 1 401 25 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA Y01 . . . M 11 110.351 85.296 87.928 1 24.69 ? CAA Y01 506 R 1 
HETATM 2 C CBA Y01 . . . M 11 109.164 85.115 86.995 1 26.12 ? CBA Y01 506 R 1 
HETATM 3 C CAB Y01 . . . M 11 108.938 83.64 86.703 1 27.95 ? CAB Y01 506 R 1 
HETATM 4 C CAN Y01 . . . M 11 107.904 85.771 87.56 1 26.96 ? CAN Y01 506 R 1 
HETATM 5 C CAJ Y01 . . . M 11 106.683 85.707 86.67 1 26.73 ? CAJ Y01 506 R 1 
HETATM 6 C CAO Y01 . . . M 11 105.479 86.432 87.231 1 24.66 ? CAO Y01 506 R 1 
HETATM 7 C CBB Y01 . . . M 11 104.517 85.598 88.095 1 26.34 ? CBB Y01 506 R 1 
HETATM 8 C CAC Y01 . . . M 11 104.909 84.122 88.111 1 25.9 ? CAC Y01 506 R 1 
HETATM 9 C CBE Y01 . . . M 11 104.351 86.2 89.505 1 28.23 ? CBE Y01 506 R 1 
HETATM 10 C CAP Y01 . . . M 11 105.622 86.916 90.038 1 22.04 ? CAP Y01 506 R 1 
HETATM 11 C CAQ Y01 . . . M 11 105.132 87.956 91.066 1 26.61 ? CAQ Y01 506 R 1 
HETATM 12 C CBG Y01 . . . M 11 103.654 87.618 91.248 1 25.89 ? CBG Y01 506 R 1 
HETATM 13 C CBI Y01 . . . M 11 103.202 87.198 89.835 1 25.4 ? CBI Y01 506 R 1 
HETATM 14 C CAE Y01 . . . M 11 103.202 88.382 88.853 1 23.68 ? CAE Y01 506 R 1 
HETATM 15 C CAU Y01 . . . M 11 101.797 86.605 89.968 1 28.4 ? CAU Y01 506 R 1 
HETATM 16 C CAS Y01 . . . M 11 100.832 87.608 90.609 1 27.61 ? CAS Y01 506 R 1 
HETATM 17 C CBF Y01 . . . M 11 101.306 88.086 91.991 1 24.94 ? CBF Y01 506 R 1 
HETATM 18 C CBD Y01 . . . M 11 102.748 88.624 91.949 1 22.5 ? CBD Y01 506 R 1 
HETATM 19 C CAK Y01 . . . M 11 103.242 88.884 93.37 1 26.77 ? CAK Y01 506 R 1 
HETATM 20 C CAI Y01 . . . M 11 102.205 89.521 94.24 1 25.16 ? CAI Y01 506 R 1 
HETATM 21 C CAZ Y01 . . . M 11 100.928 89.671 93.919 1 23.59 ? CAZ Y01 506 R 1 
HETATM 22 C CAV Y01 . . . M 11 99.98 90.417 94.835 1 24.9 ? CAV Y01 506 R 1 
HETATM 23 C CBH Y01 . . . M 11 100.311 89.08 92.655 1 26.97 ? CBH Y01 506 R 1 
HETATM 24 C CAD Y01 . . . M 11 99.946 90.244 91.716 1 24.06 ? CAD Y01 506 R 1 
HETATM 25 C CAT Y01 . . . M 11 99.032 88.308 93.053 1 26.74 ? CAT Y01 506 R 1 
HETATM 26 C CAR Y01 . . . M 11 98.09 89.102 93.959 1 26.19 ? CAR Y01 506 R 1 
HETATM 27 C CBC Y01 . . . M 11 98.799 89.554 95.207 1 28.5 ? CBC Y01 506 R 1 
HETATM 28 O OAW Y01 . . . M 11 97.876 90.334 96.024 1 29.94 ? OAW Y01 506 R 1 
HETATM 29 C CAY Y01 . . . M 11 98.174 90.553 97.303 1 28.64 ? CAY Y01 506 R 1 
HETATM 30 O OAG Y01 . . . M 11 99.26 90.388 97.779 1 28.83 ? OAG Y01 506 R 1 
HETATM 31 C CAM Y01 . . . M 11 96.963 90.972 98.088 1 25.98 ? CAM Y01 506 R 1 
HETATM 32 C CAL Y01 . . . M 11 96.545 89.992 99.167 1 27.77 ? CAL Y01 506 R 1 
HETATM 33 C CAX Y01 . . . M 11 96.314 88.573 98.675 1 31.41 ? CAX Y01 506 R 1 
HETATM 34 O OAH Y01 . . . M 11 95.435 88.384 97.811 1 28.56 ? OAH Y01 506 R 1 
HETATM 35 O OAF Y01 . . . M 11 97.018 87.662 99.154 1 32.76 ? OAF Y01 506 R 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           35 
#