data_8F0J # _model_server_result.job_id MXaNmkAdv6Gh0O6BHewQTg _model_server_result.datetime_utc '2024-11-21 22:44:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f0j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":507}' # _entry.id 8F0J # _exptl.entry_id 8F0J _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8F0J _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F0J _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 M N N ? 11 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2 P CYS 2 1_555 A SG CYS 7 P CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 B SG CYS 63 R CYS 55 1_555 B SG CYS 89 R CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 B SG CYS 80 R CYS 72 1_555 B SG CYS 120 R CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 103 R CYS 95 1_555 B SG CYS 142 R CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 B SG CYS 227 R CYS 219 1_555 B SG CYS 297 R CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 F SG CYS 22 N CYS 22 1_555 F SG CYS 96 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 F SG CYS 99 N CYS 99 1_555 F SG CYS 107 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A NZ LYS 21 P LYS 21 1_555 G C07 D6M . P D6M 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale2 A C TYR 37 P TYR 37 1_555 A N NH2 38 P NH2 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 B ND2 ASN 81 R ASN 73 1_555 H C1 NAG . R NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale4 B ND2 ASN 138 R ASN 130 1_555 I C1 NAG . R NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 790 n n CBA CAB Y01 sing 791 n n CBA CAN Y01 sing 792 n n CAN CAJ Y01 sing 793 n n CAJ CAO Y01 sing 794 n n CAO CBB Y01 sing 795 n n CBB CAC Y01 sing 796 n n CBB CBE Y01 sing 797 n n CBE CAP Y01 sing 798 n n CBE CBI Y01 sing 799 n n CAP CAQ Y01 sing 800 n n CAQ CBG Y01 sing 801 n n CBG CBI Y01 sing 802 n n CBG CBD Y01 sing 803 n n CBI CAE Y01 sing 804 n n CBI CAU Y01 sing 805 n n CAU CAS Y01 sing 806 n n CAS CBF Y01 sing 807 n n CBF CBD Y01 sing 808 n n CBF CBH Y01 sing 809 n n CBD CAK Y01 sing 810 n n CAK CAI Y01 sing 811 n n CAI CAZ Y01 doub 812 n n CAZ CAV Y01 sing 813 n n CAZ CBH Y01 sing 814 n n CAV CBC Y01 sing 815 n n CBH CAD Y01 sing 816 n n CBH CAT Y01 sing 817 n n CAT CAR Y01 sing 818 n n CAR CBC Y01 sing 819 n n CBC OAW Y01 sing 820 n n OAW CAY Y01 sing 821 n n CAY OAG Y01 doub 822 n n CAY CAM Y01 sing 823 n n CAM CAL Y01 sing 824 n n CAL CAX Y01 sing 825 n n CAX OAH Y01 sing 826 n n CAX OAF Y01 doub 827 n n CAA HAA1 Y01 sing 828 n n CAA HAA2 Y01 sing 829 n n CAA HAA3 Y01 sing 830 n n CBA HBA Y01 sing 831 n n CAB HAB1 Y01 sing 832 n n CAB HAB2 Y01 sing 833 n n CAB HAB3 Y01 sing 834 n n CAN HAN1 Y01 sing 835 n n CAN HAN2 Y01 sing 836 n n CAJ HAJ1 Y01 sing 837 n n CAJ HAJ2 Y01 sing 838 n n CAO HAO1 Y01 sing 839 n n CAO HAO2 Y01 sing 840 n n CBB HBB Y01 sing 841 n n CAC HAC1 Y01 sing 842 n n CAC HAC2 Y01 sing 843 n n CAC HAC3 Y01 sing 844 n n CBE HBE Y01 sing 845 n n CAP HAP1 Y01 sing 846 n n CAP HAP2 Y01 sing 847 n n CAQ HAQ1 Y01 sing 848 n n CAQ HAQ2 Y01 sing 849 n n CBG HBG Y01 sing 850 n n CBD HBD Y01 sing 851 n n CAE HAE1 Y01 sing 852 n n CAE HAE2 Y01 sing 853 n n CAE HAE3 Y01 sing 854 n n CAU HAU1 Y01 sing 855 n n CAU HAU2 Y01 sing 856 n n CAS HAS1 Y01 sing 857 n n CAS HAS2 Y01 sing 858 n n CBF HBF Y01 sing 859 n n CAK HAK1 Y01 sing 860 n n CAK HAK2 Y01 sing 861 n n CAI HAI Y01 sing 862 n n CAV HAV1 Y01 sing 863 n n CAV HAV2 Y01 sing 864 n n CBC HBC Y01 sing 865 n n CAD HAD1 Y01 sing 866 n n CAD HAD2 Y01 sing 867 n n CAD HAD3 Y01 sing 868 n n CAT HAT1 Y01 sing 869 n n CAT HAT2 Y01 sing 870 n n CAR HAR1 Y01 sing 871 n n CAR HAR2 Y01 sing 872 n n CAM HAM1 Y01 sing 873 n n CAM HAM2 Y01 sing 874 n n CAL HAL1 Y01 sing 875 n n CAL HAL2 Y01 sing 876 n n OAH HAH Y01 sing 877 n n # _atom_sites.entry_id 8F0J _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 7 D6M P 1 101 21 D6M L6M . H 8 NAG R 1 501 410 NAG NAG . I 8 NAG R 1 502 411 NAG NAG . J 9 PTY R 1 503 1 PTY PTY . K 9 PTY R 1 504 2 PTY PTY . L 10 PLM R 1 505 4 PLM PLM . M 11 Y01 R 1 506 5 Y01 Y01 . N 11 Y01 R 1 507 6 Y01 Y01 . O 9 PTY R 1 508 7 PTY PTY . P 12 P42 R 1 509 8 P42 P42 . Q 10 PLM R 1 510 9 PLM PLM . R 10 PLM R 1 511 10 PLM PLM . S 10 PLM R 1 512 11 PLM PLM . T 10 PLM R 1 513 12 PLM PLM . U 10 PLM R 1 514 13 PLM PLM . V 10 PLM R 1 515 14 PLM PLM . W 10 PLM R 1 516 15 PLM PLM . X 13 HOH P 1 201 10 HOH HOH . X 13 HOH P 2 202 17 HOH HOH . X 13 HOH P 3 203 15 HOH HOH . X 13 HOH P 4 204 14 HOH HOH . X 13 HOH P 5 205 16 HOH HOH . X 13 HOH P 6 206 19 HOH HOH . X 13 HOH P 7 207 9 HOH HOH . X 13 HOH P 8 208 1 HOH HOH . X 13 HOH P 9 209 18 HOH HOH . X 13 HOH P 10 210 20 HOH HOH . Y 13 HOH R 1 601 22 HOH HOH . Y 13 HOH R 2 602 2 HOH HOH . Y 13 HOH R 3 603 28 HOH HOH . Y 13 HOH R 4 604 21 HOH HOH . Y 13 HOH R 5 605 6 HOH HOH . Y 13 HOH R 6 606 24 HOH HOH . Y 13 HOH R 7 607 3 HOH HOH . Y 13 HOH R 8 608 29 HOH HOH . Y 13 HOH R 9 609 7 HOH HOH . Y 13 HOH R 10 610 26 HOH HOH . Y 13 HOH R 11 611 27 HOH HOH . Y 13 HOH R 12 612 8 HOH HOH . Y 13 HOH R 13 613 23 HOH HOH . Y 13 HOH R 14 614 4 HOH HOH . Z 13 HOH A 1 401 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . N 11 105.546 86.155 82.832 1 27.47 ? CAA Y01 507 R 1 HETATM 2 C CBA Y01 . . . N 11 104.143 85.733 83.241 1 28.19 ? CBA Y01 507 R 1 HETATM 3 C CAB Y01 . . . N 11 104.182 84.415 83.997 1 29.52 ? CAB Y01 507 R 1 HETATM 4 C CAN Y01 . . . N 11 103.451 86.823 84.059 1 26.85 ? CAN Y01 507 R 1 HETATM 5 C CAJ Y01 . . . N 11 102.05 86.504 84.519 1 25.64 ? CAJ Y01 507 R 1 HETATM 6 C CAO Y01 . . . N 11 101.425 87.62 85.32 1 24.82 ? CAO Y01 507 R 1 HETATM 7 C CBB Y01 . . . N 11 100 87.355 85.827 1 28.86 ? CBB Y01 507 R 1 HETATM 8 C CAC Y01 . . . N 11 99.981 86.114 86.716 1 28.45 ? CAC Y01 507 R 1 HETATM 9 C CBE Y01 . . . N 11 99.454 88.619 86.518 1 26.02 ? CBE Y01 507 R 1 HETATM 10 C CAP Y01 . . . N 11 99.564 89.872 85.606 1 24.05 ? CAP Y01 507 R 1 HETATM 11 C CAQ Y01 . . . N 11 98.353 90.767 85.929 1 24.09 ? CAQ Y01 507 R 1 HETATM 12 C CBG Y01 . . . N 11 97.862 90.204 87.257 1 27.43 ? CBG Y01 507 R 1 HETATM 13 C CBI Y01 . . . N 11 97.991 88.679 87.06 1 25.5 ? CBI Y01 507 R 1 HETATM 14 C CAE Y01 . . . N 11 97.01 88.152 86 1 27.23 ? CAE Y01 507 R 1 HETATM 15 C CAU Y01 . . . N 11 97.728 88.031 88.425 1 26.6 ? CAU Y01 507 R 1 HETATM 16 C CAS Y01 . . . N 11 96.371 88.449 89.001 1 27.39 ? CAS Y01 507 R 1 HETATM 17 C CBF Y01 . . . N 11 96.225 89.972 89.137 1 25.18 ? CBF Y01 507 R 1 HETATM 18 C CBD Y01 . . . N 11 96.525 90.684 87.806 1 26.04 ? CBD Y01 507 R 1 HETATM 19 C CAK Y01 . . . N 11 96.555 92.195 88.015 1 25.39 ? CAK Y01 507 R 1 HETATM 20 C CAI Y01 . . . N 11 95.469 92.681 88.921 1 24.76 ? CAI Y01 507 R 1 HETATM 21 C CAZ Y01 . . . N 11 94.682 91.906 89.65 1 25.21 ? CAZ Y01 507 R 1 HETATM 22 C CAV Y01 . . . N 11 93.557 92.5 90.469 1 23.94 ? CAV Y01 507 R 1 HETATM 23 C CBH Y01 . . . N 11 94.86 90.394 89.754 1 26.7 ? CBH Y01 507 R 1 HETATM 24 C CAD Y01 . . . N 11 93.673 89.727 89.035 1 27.54 ? CAD Y01 507 R 1 HETATM 25 C CAT Y01 . . . N 11 94.847 90.008 91.252 1 25.2 ? CAT Y01 507 R 1 HETATM 26 C CAR Y01 . . . N 11 93.684 90.617 92.039 1 26.71 ? CAR Y01 507 R 1 HETATM 27 C CBC Y01 . . . N 11 93.684 92.117 91.923 1 26.83 ? CBC Y01 507 R 1 HETATM 28 O OAW Y01 . . . N 11 92.539 92.688 92.625 1 26.41 ? OAW Y01 507 R 1 HETATM 29 C CAY Y01 . . . N 11 92.549 92.719 93.956 1 26.83 ? CAY Y01 507 R 1 HETATM 30 O OAG Y01 . . . N 11 93.374 92.179 94.634 1 31.42 ? OAG Y01 507 R 1 HETATM 31 C CAM Y01 . . . N 11 91.426 93.556 94.501 1 23.78 ? CAM Y01 507 R 1 HETATM 32 C CAL Y01 . . . N 11 91.853 94.73 95.361 1 25.3 ? CAL Y01 507 R 1 HETATM 33 C CAX Y01 . . . N 11 90.735 95.687 95.738 1 29.83 ? CAX Y01 507 R 1 HETATM 34 O OAH Y01 . . . N 11 90.148 96.296 94.823 1 30.77 ? OAH Y01 507 R 1 HETATM 35 O OAF Y01 . . . N 11 90.455 95.821 96.946 1 25.48 ? OAF Y01 507 R 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 35 #