data_8F0J # _model_server_result.job_id pGh2IL7fkAWQLtUE0QbE-g _model_server_result.datetime_utc '2024-11-24 18:10:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f0j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":508}' # _entry.id 8F0J # _exptl.entry_id 8F0J _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 734.039 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHATIDYLETHANOLAMINE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8F0J _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F0J _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 J N N ? 9 K N N ? 9 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2 P CYS 2 1_555 A SG CYS 7 P CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 B SG CYS 63 R CYS 55 1_555 B SG CYS 89 R CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 B SG CYS 80 R CYS 72 1_555 B SG CYS 120 R CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 103 R CYS 95 1_555 B SG CYS 142 R CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 B SG CYS 227 R CYS 219 1_555 B SG CYS 297 R CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 F SG CYS 22 N CYS 22 1_555 F SG CYS 96 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 F SG CYS 99 N CYS 99 1_555 F SG CYS 107 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A NZ LYS 21 P LYS 21 1_555 G C07 D6M . P D6M 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale2 A C TYR 37 P TYR 37 1_555 A N NH2 38 P NH2 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 B ND2 ASN 81 R ASN 73 1_555 H C1 NAG . R NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale4 B ND2 ASN 138 R ASN 130 1_555 I C1 NAG . R NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? # _chem_comp.formula 'C40 H80 N O8 P' _chem_comp.formula_weight 734.039 _chem_comp.id PTY _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHATIDYLETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O4 PTY sing 562 n n C1 C6 PTY sing 563 n n C1 HC11 PTY sing 564 n n C1 HC12 PTY sing 565 n n C2 C3 PTY sing 566 n n C2 N1 PTY sing 567 n n C2 HC21 PTY sing 568 n n C2 HC22 PTY sing 569 n n C3 O11 PTY sing 570 n n C3 HC31 PTY sing 571 n n C3 HC32 PTY sing 572 n n O4 C30 PTY sing 573 n n C5 C6 PTY sing 574 n n C5 O14 PTY sing 575 n n C5 HC51 PTY sing 576 n n C5 HC52 PTY sing 577 n n C6 O7 PTY sing 578 n n C6 HC6 PTY sing 579 n n O7 C8 PTY sing 580 n n C8 O10 PTY doub 581 n n C8 C11 PTY sing 582 n n C11 C12 PTY sing 583 n n C11 H111 PTY sing 584 n n C11 H112 PTY sing 585 n n C12 C13 PTY sing 586 n n C12 H121 PTY sing 587 n n C12 H122 PTY sing 588 n n C13 C14 PTY sing 589 n n C13 H131 PTY sing 590 n n C13 H132 PTY sing 591 n n C14 C15 PTY sing 592 n n C14 H141 PTY sing 593 n n C14 H142 PTY sing 594 n n C15 C16 PTY sing 595 n n C15 H151 PTY sing 596 n n C15 H152 PTY sing 597 n n C16 C17 PTY sing 598 n n C16 H161 PTY sing 599 n n C16 H162 PTY sing 600 n n C17 C18 PTY sing 601 n n C17 H171 PTY sing 602 n n C17 H172 PTY sing 603 n n C18 C19 PTY sing 604 n n C18 H181 PTY sing 605 n n C18 H182 PTY sing 606 n n C19 C20 PTY sing 607 n n C19 H191 PTY sing 608 n n C19 H192 PTY sing 609 n n C20 C21 PTY sing 610 n n C20 H201 PTY sing 611 n n C20 H202 PTY sing 612 n n C21 C22 PTY sing 613 n n C21 H211 PTY sing 614 n n C21 H212 PTY sing 615 n n C22 C23 PTY sing 616 n n C22 H221 PTY sing 617 n n C22 H222 PTY sing 618 n n C23 C24 PTY sing 619 n n C23 H231 PTY sing 620 n n C23 H232 PTY sing 621 n n C24 C25 PTY sing 622 n n C24 H241 PTY sing 623 n n C24 H242 PTY sing 624 n n C25 C26 PTY sing 625 n n C25 H251 PTY sing 626 n n C25 H252 PTY sing 627 n n C26 C27 PTY sing 628 n n C26 H261 PTY sing 629 n n C26 H262 PTY sing 630 n n C27 C28 PTY sing 631 n n C27 H271 PTY sing 632 n n C27 H272 PTY sing 633 n n C28 C29 PTY sing 634 n n C28 H281 PTY sing 635 n n C28 H282 PTY sing 636 n n C29 H291 PTY sing 637 n n C29 H292 PTY sing 638 n n C29 H293 PTY sing 639 n n C30 C31 PTY sing 640 n n C30 O30 PTY doub 641 n n C31 C32 PTY sing 642 n n C31 H311 PTY sing 643 n n C31 H312 PTY sing 644 n n C32 C33 PTY sing 645 n n C32 H321 PTY sing 646 n n C32 H322 PTY sing 647 n n C33 C34 PTY sing 648 n n C33 H331 PTY sing 649 n n C33 H332 PTY sing 650 n n C34 C35 PTY sing 651 n n C34 H341 PTY sing 652 n n C34 H342 PTY sing 653 n n C35 C36 PTY sing 654 n n C35 H351 PTY sing 655 n n C35 H352 PTY sing 656 n n C36 C37 PTY sing 657 n n C36 H361 PTY sing 658 n n C36 H362 PTY sing 659 n n C37 C38 PTY sing 660 n n C37 H371 PTY sing 661 n n C37 H372 PTY sing 662 n n C38 C39 PTY sing 663 n n C38 H381 PTY sing 664 n n C38 H382 PTY sing 665 n n C39 C40 PTY sing 666 n n C39 H391 PTY sing 667 n n C39 H392 PTY sing 668 n n C40 C41 PTY sing 669 n n C40 H401 PTY sing 670 n n C40 H402 PTY sing 671 n n C41 C42 PTY sing 672 n n C41 H411 PTY sing 673 n n C41 H412 PTY sing 674 n n C42 C43 PTY sing 675 n n C42 H421 PTY sing 676 n n C42 H422 PTY sing 677 n n C43 C44 PTY sing 678 n n C43 H431 PTY sing 679 n n C43 H432 PTY sing 680 n n C44 H441 PTY sing 681 n n C44 H442 PTY sing 682 n n C44 H443 PTY sing 683 n n P1 O11 PTY sing 684 n n P1 O12 PTY sing 685 n n P1 O13 PTY doub 686 n n P1 O14 PTY sing 687 n n O12 H12O PTY sing 688 n n N1 HN11 PTY sing 689 n n N1 HN12 PTY sing 690 n n # _atom_sites.entry_id 8F0J _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 7 D6M P 1 101 21 D6M L6M . H 8 NAG R 1 501 410 NAG NAG . I 8 NAG R 1 502 411 NAG NAG . J 9 PTY R 1 503 1 PTY PTY . K 9 PTY R 1 504 2 PTY PTY . L 10 PLM R 1 505 4 PLM PLM . M 11 Y01 R 1 506 5 Y01 Y01 . N 11 Y01 R 1 507 6 Y01 Y01 . O 9 PTY R 1 508 7 PTY PTY . P 12 P42 R 1 509 8 P42 P42 . Q 10 PLM R 1 510 9 PLM PLM . R 10 PLM R 1 511 10 PLM PLM . S 10 PLM R 1 512 11 PLM PLM . T 10 PLM R 1 513 12 PLM PLM . U 10 PLM R 1 514 13 PLM PLM . V 10 PLM R 1 515 14 PLM PLM . W 10 PLM R 1 516 15 PLM PLM . X 13 HOH P 1 201 10 HOH HOH . X 13 HOH P 2 202 17 HOH HOH . X 13 HOH P 3 203 15 HOH HOH . X 13 HOH P 4 204 14 HOH HOH . X 13 HOH P 5 205 16 HOH HOH . X 13 HOH P 6 206 19 HOH HOH . X 13 HOH P 7 207 9 HOH HOH . X 13 HOH P 8 208 1 HOH HOH . X 13 HOH P 9 209 18 HOH HOH . X 13 HOH P 10 210 20 HOH HOH . Y 13 HOH R 1 601 22 HOH HOH . Y 13 HOH R 2 602 2 HOH HOH . Y 13 HOH R 3 603 28 HOH HOH . Y 13 HOH R 4 604 21 HOH HOH . Y 13 HOH R 5 605 6 HOH HOH . Y 13 HOH R 6 606 24 HOH HOH . Y 13 HOH R 7 607 3 HOH HOH . Y 13 HOH R 8 608 29 HOH HOH . Y 13 HOH R 9 609 7 HOH HOH . Y 13 HOH R 10 610 26 HOH HOH . Y 13 HOH R 11 611 27 HOH HOH . Y 13 HOH R 12 612 8 HOH HOH . Y 13 HOH R 13 613 23 HOH HOH . Y 13 HOH R 14 614 4 HOH HOH . Z 13 HOH A 1 401 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PTY . . . O 9 136.555 102.021 90.942 1 36.95 ? C1 PTY 508 R 1 HETATM 2 C C2 PTY . . . O 9 141.528 100.816 89.119 1 37.16 ? C2 PTY 508 R 1 HETATM 3 C C3 PTY . . . O 9 141.01 99.833 90.135 1 38.11 ? C3 PTY 508 R 1 HETATM 4 O O4 PTY . . . O 9 136.455 103.441 91.179 1 36.96 ? O4 PTY 508 R 1 HETATM 5 C C5 PTY . . . O 9 136.377 99.808 92.175 1 37.47 ? C5 PTY 508 R 1 HETATM 6 C C6 PTY . . . O 9 136.211 101.311 92.231 1 39.4 ? C6 PTY 508 R 1 HETATM 7 O O7 PTY . . . O 9 134.907 101.729 92.731 1 38.63 ? O7 PTY 508 R 1 HETATM 8 C C8 PTY . . . O 9 133.836 101.669 91.92 1 39.47 ? C8 PTY 508 R 1 HETATM 9 O O10 PTY . . . O 9 133.571 100.722 91.23 1 40.95 ? O10 PTY 508 R 1 HETATM 10 C C11 PTY . . . O 9 132.987 102.906 91.975 1 38.07 ? C11 PTY 508 R 1 HETATM 11 C C12 PTY . . . O 9 132.443 103.189 93.335 1 37.89 ? C12 PTY 508 R 1 HETATM 12 C C13 PTY . . . O 9 131.616 102.042 93.884 1 37.58 ? C13 PTY 508 R 1 HETATM 13 C C14 PTY . . . O 9 131.282 102.176 95.347 1 38.21 ? C14 PTY 508 R 1 HETATM 14 C C15 PTY . . . O 9 130.616 100.969 95.953 1 39.14 ? C15 PTY 508 R 1 HETATM 15 C C16 PTY . . . O 9 129.147 100.842 95.644 1 36.68 ? C16 PTY 508 R 1 HETATM 16 C C17 PTY . . . O 9 128.349 102.08 95.953 1 37.15 ? C17 PTY 508 R 1 HETATM 17 C C18 PTY . . . O 9 126.927 101.82 96.371 1 38.3 ? C18 PTY 508 R 1 HETATM 18 C C19 PTY . . . O 9 126.777 101.38 97.805 1 36.73 ? C19 PTY 508 R 1 HETATM 19 C C20 PTY . . . O 9 127.52 102.249 98.787 1 37.9 ? C20 PTY 508 R 1 HETATM 20 C C21 PTY . . . O 9 127.118 102.064 100.228 1 38.07 ? C21 PTY 508 R 1 HETATM 21 C C22 PTY . . . O 9 125.733 102.562 100.553 1 37.55 ? C22 PTY 508 R 1 HETATM 22 C C23 PTY . . . O 9 125.422 102.623 102.027 1 37.76 ? C23 PTY 508 R 1 HETATM 23 C C24 PTY . . . O 9 123.997 103.001 102.341 1 37.98 ? C24 PTY 508 R 1 HETATM 24 C C25 PTY . . . O 9 123.715 103.198 103.809 1 38.02 ? C25 PTY 508 R 1 HETATM 25 C C26 PTY . . . O 9 123.982 101.984 104.662 1 37.94 ? C26 PTY 508 R 1 HETATM 26 C C27 PTY . . . O 9 123.664 102.173 106.125 1 37.54 ? C27 PTY 508 R 1 HETATM 27 C C28 PTY . . . O 9 124.006 100.993 106.998 1 37.81 ? C28 PTY 508 R 1 HETATM 28 C C29 PTY . . . O 9 123.27 99.725 106.638 1 37.37 ? C29 PTY 508 R 1 HETATM 29 C C30 PTY . . . O 9 137.012 104.232 90.271 1 39.24 ? C30 PTY 508 R 1 HETATM 30 C C31 PTY . . . O 9 136.684 105.674 90.535 1 37.23 ? C31 PTY 508 R 1 HETATM 31 O O30 PTY . . . O 9 137.699 103.822 89.374 1 39.35 ? O30 PTY 508 R 1 HETATM 32 C C32 PTY . . . O 9 135.212 105.946 90.574 1 36.43 ? C32 PTY 508 R 1 HETATM 33 C C33 PTY . . . O 9 134.894 107.366 91.003 1 38.23 ? C33 PTY 508 R 1 HETATM 34 C C34 PTY . . . O 9 133.427 107.709 90.983 1 37.98 ? C34 PTY 508 R 1 HETATM 35 C C35 PTY . . . O 9 132.574 106.915 91.943 1 38.72 ? C35 PTY 508 R 1 HETATM 36 C C36 PTY . . . O 9 131.14 107.377 91.989 1 37.14 ? C36 PTY 508 R 1 HETATM 37 C C37 PTY . . . O 9 130.217 106.571 92.872 1 37.58 ? C37 PTY 508 R 1 HETATM 38 C C38 PTY . . . O 9 128.785 107.05 92.823 1 38.06 ? C38 PTY 508 R 1 HETATM 39 C C39 PTY . . . O 9 127.804 106.246 93.635 1 38.39 ? C39 PTY 508 R 1 HETATM 40 C C40 PTY . . . O 9 127.996 106.359 95.122 1 38.84 ? C40 PTY 508 R 1 HETATM 41 C C41 PTY . . . O 9 126.798 105.938 95.933 1 38.73 ? C41 PTY 508 R 1 HETATM 42 C C42 PTY . . . O 9 126.972 106.118 97.42 1 40.02 ? C42 PTY 508 R 1 HETATM 43 C C43 PTY . . . O 9 125.724 105.906 98.237 1 38.33 ? C43 PTY 508 R 1 HETATM 44 C C44 PTY . . . O 9 124.605 106.855 97.886 1 38.42 ? C44 PTY 508 R 1 HETATM 45 P P1 PTY . . . O 9 138.783 99.08 91.333 1 44.2 ? P1 PTY 508 R 1 HETATM 46 O O11 PTY . . . O 9 139.569 99.97 90.252 1 39.01 ? O11 PTY 508 R 1 HETATM 47 O O12 PTY . . . O 9 138.979 97.637 90.963 1 38.41 ? O12 PTY 508 R 1 HETATM 48 O O13 PTY . . . O 9 139.17 99.566 92.701 1 41.12 ? O13 PTY 508 R 1 HETATM 49 O O14 PTY . . . O 9 137.247 99.464 91.061 1 38.49 ? O14 PTY 508 R 1 HETATM 50 N N1 PTY . . . O 9 142.985 100.756 88.995 1 38.5 ? N1 PTY 508 R 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 50 #