data_8F0J # _model_server_result.job_id CYWed6ykPKeVWAXDE3XdYg _model_server_result.datetime_utc '2024-10-10 13:28:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f0j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":509}' # _entry.id 8F0J # _exptl.entry_id 8F0J _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 766.124 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-{[(1R)-1-hydroxyhexadecyl]oxy}-3-{[(1R)-1-hydroxyoctadecyl]oxy}propyl 2-(trimethylammonio)ethyl phosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8F0J _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F0J _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 12 _struct_asym.id P _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 2 P CYS 2 1_555 A SG CYS 7 P CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 B SG CYS 63 R CYS 55 1_555 B SG CYS 89 R CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 B SG CYS 80 R CYS 72 1_555 B SG CYS 120 R CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 103 R CYS 95 1_555 B SG CYS 142 R CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 B SG CYS 227 R CYS 219 1_555 B SG CYS 297 R CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 F SG CYS 22 N CYS 22 1_555 F SG CYS 96 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 F SG CYS 99 N CYS 99 1_555 F SG CYS 107 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A NZ LYS 21 P LYS 21 1_555 G C07 D6M . P D6M 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale2 A C TYR 37 P TYR 37 1_555 A N NH2 38 P NH2 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 B ND2 ASN 81 R ASN 73 1_555 H C1 NAG . R NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale4 B ND2 ASN 138 R ASN 130 1_555 I C1 NAG . R NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? # _chem_comp.formula 'C42 H88 N O8 P' _chem_comp.formula_weight 766.124 _chem_comp.id P42 _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-{[(1R)-1-hydroxyhexadecyl]oxy}-3-{[(1R)-1-hydroxyoctadecyl]oxy}propyl 2-(trimethylammonio)ethyl phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Stearoyl-2-Palmitoyl-sn-Glycero-3-Phosphocholine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 H4 P42 sing 334 n n C4 H4A P42 sing 335 n n C5 C4 P42 sing 336 n n C5 H5 P42 sing 337 n n C5 H5A P42 sing 338 n n C6 N P42 sing 339 n n C6 H6 P42 sing 340 n n C6 H6A P42 sing 341 n n C6 H6B P42 sing 342 n n C7 N P42 sing 343 n n C7 H7 P42 sing 344 n n C7 H7A P42 sing 345 n n C7 H7B P42 sing 346 n n C8 N P42 sing 347 n n C8 H8 P42 sing 348 n n C8 H8A P42 sing 349 n n C8 H8B P42 sing 350 n n CBX CBV P42 sing 351 n n CBX HBX P42 sing 352 n n CBX HBXA P42 sing 353 n n CBV CBS P42 sing 354 n n CBV HBV P42 sing 355 n n CBS CBH P42 sing 356 n n CBS HBS P42 sing 357 n n CBS HBSA P42 sing 358 n n CBH CAQ P42 sing 359 n n CBH HBH P42 sing 360 n n CBH HBHA P42 sing 361 n n CAQ HAQ P42 sing 362 n n CAQ HAQA P42 sing 363 n n CAP CAQ P42 sing 364 n n CAP CAO P42 sing 365 n n CAP HAP P42 sing 366 n n CAP HAPA P42 sing 367 n n CAO HAO P42 sing 368 n n CAO HAOA P42 sing 369 n n CAN CAO P42 sing 370 n n CAN CAM P42 sing 371 n n CAN HAN P42 sing 372 n n CAN HANA P42 sing 373 n n CAM CAL P42 sing 374 n n CAM HAM P42 sing 375 n n CAL CAK P42 sing 376 n n CAL HAL P42 sing 377 n n CAK HAK P42 sing 378 n n CAK HAKA P42 sing 379 n n CAJ CAK P42 sing 380 n n CAJ CAI P42 sing 381 n n CAJ HAJ P42 sing 382 n n CAJ HAJA P42 sing 383 n n CAI HAI P42 sing 384 n n CAI HAIA P42 sing 385 n n CAH CAI P42 sing 386 n n CAH HAH P42 sing 387 n n CAG CAH P42 sing 388 n n CAG CAF P42 sing 389 n n CAG HAG P42 sing 390 n n CAF CAE P42 sing 391 n n CAF HAF P42 sing 392 n n CAF HAFA P42 sing 393 n n CAE HAE P42 sing 394 n n CAE HAEA P42 sing 395 n n CAD CAE P42 sing 396 n n CAD OAA P42 sing 397 n n CAD HAD P42 sing 398 n n OAA HOAA P42 sing 399 n n OAC CAD P42 sing 400 n n CAB OAC P42 sing 401 n n CAB HAB P42 sing 402 n n CAB HABA P42 sing 403 n n CBE CAB P42 sing 404 n n CBE OBD P42 sing 405 n n CBE HBE P42 sing 406 n n CBK CBE P42 sing 407 n n CBK HBK P42 sing 408 n n CBK HBKA P42 sing 409 n n OBL CBK P42 sing 410 n n PBM OBL P42 sing 411 n n PBM OBF P42 sing 412 n n OBU PBM P42 doub 413 n n OBN C4 P42 sing 414 n n OBN PBM P42 sing 415 n n CBC OBD P42 sing 416 n n CBC CBB P42 sing 417 n n CBC HBC P42 sing 418 n n OBJ CBC P42 sing 419 n n OBJ HOBJ P42 sing 420 n n CBB HBB P42 sing 421 n n CBB HBBA P42 sing 422 n n CBA CBB P42 sing 423 n n CBA CAZ P42 sing 424 n n CBA HBA P42 sing 425 n n CAZ HAZ P42 sing 426 n n CAY CAZ P42 sing 427 n n CAY CAX P42 sing 428 n n CAY HAY P42 sing 429 n n CAY HAYA P42 sing 430 n n CAX HAX P42 sing 431 n n CAX HAXA P42 sing 432 n n CAW CAX P42 sing 433 n n CAW CAV P42 sing 434 n n CAW HAW P42 sing 435 n n CAW HAWA P42 sing 436 n n CAV CAU P42 sing 437 n n CAV HAV P42 sing 438 n n CAV HAVA P42 sing 439 n n CAU CAT P42 sing 440 n n CAU HAU P42 sing 441 n n CAU HAUA P42 sing 442 n n CAT CAS P42 sing 443 n n CAT HAT P42 sing 444 n n CAT HATA P42 sing 445 n n CAS CAR P42 sing 446 n n CAS HAS P42 sing 447 n n CAR CBI P42 sing 448 n n CAR HAR P42 sing 449 n n CBI CBT P42 sing 450 n n CBI HBI P42 sing 451 n n CBI HBIA P42 sing 452 n n CBT CBW P42 sing 453 n n CBT HBT P42 sing 454 n n CBT HBTA P42 sing 455 n n CBW HBW P42 sing 456 n n CBY CBW P42 sing 457 n n CBY HBY P42 sing 458 n n CBY HBYA P42 sing 459 n n N C5 P42 sing 460 n n CBX H77 P42 sing 461 n n CBV H78 P42 sing 462 n n CAM H79 P42 sing 463 n n CAL H80 P42 sing 464 n n CAH H81 P42 sing 465 n n CAG H82 P42 sing 466 n n CBA H83 P42 sing 467 n n CAZ H84 P42 sing 468 n n CAS H85 P42 sing 469 n n CAR H86 P42 sing 470 n n CBW H87 P42 sing 471 n n CBY H88 P42 sing 472 n n # _atom_sites.entry_id 8F0J _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 7 D6M P 1 101 21 D6M L6M . H 8 NAG R 1 501 410 NAG NAG . I 8 NAG R 1 502 411 NAG NAG . J 9 PTY R 1 503 1 PTY PTY . K 9 PTY R 1 504 2 PTY PTY . L 10 PLM R 1 505 4 PLM PLM . M 11 Y01 R 1 506 5 Y01 Y01 . N 11 Y01 R 1 507 6 Y01 Y01 . O 9 PTY R 1 508 7 PTY PTY . P 12 P42 R 1 509 8 P42 P42 . Q 10 PLM R 1 510 9 PLM PLM . R 10 PLM R 1 511 10 PLM PLM . S 10 PLM R 1 512 11 PLM PLM . T 10 PLM R 1 513 12 PLM PLM . U 10 PLM R 1 514 13 PLM PLM . V 10 PLM R 1 515 14 PLM PLM . W 10 PLM R 1 516 15 PLM PLM . X 13 HOH P 1 201 10 HOH HOH . X 13 HOH P 2 202 17 HOH HOH . X 13 HOH P 3 203 15 HOH HOH . X 13 HOH P 4 204 14 HOH HOH . X 13 HOH P 5 205 16 HOH HOH . X 13 HOH P 6 206 19 HOH HOH . X 13 HOH P 7 207 9 HOH HOH . X 13 HOH P 8 208 1 HOH HOH . X 13 HOH P 9 209 18 HOH HOH . X 13 HOH P 10 210 20 HOH HOH . Y 13 HOH R 1 601 22 HOH HOH . Y 13 HOH R 2 602 2 HOH HOH . Y 13 HOH R 3 603 28 HOH HOH . Y 13 HOH R 4 604 21 HOH HOH . Y 13 HOH R 5 605 6 HOH HOH . Y 13 HOH R 6 606 24 HOH HOH . Y 13 HOH R 7 607 3 HOH HOH . Y 13 HOH R 8 608 29 HOH HOH . Y 13 HOH R 9 609 7 HOH HOH . Y 13 HOH R 10 610 26 HOH HOH . Y 13 HOH R 11 611 27 HOH HOH . Y 13 HOH R 12 612 8 HOH HOH . Y 13 HOH R 13 613 23 HOH HOH . Y 13 HOH R 14 614 4 HOH HOH . Z 13 HOH A 1 401 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 P42 . . . P 12 139.201 90.752 86.565 1 40.2 ? C4 P42 509 R 1 HETATM 2 C C5 P42 . . . P 12 138.457 89.508 86.151 1 40.62 ? C5 P42 509 R 1 HETATM 3 C C6 P42 . . . P 12 138.14 87.647 84.581 1 40.3 ? C6 P42 509 R 1 HETATM 4 C C7 P42 . . . P 12 140.359 88.133 85.423 1 39.53 ? C7 P42 509 R 1 HETATM 5 C C8 P42 . . . P 12 139.306 89.643 83.85 1 39.57 ? C8 P42 509 R 1 HETATM 6 C CBX P42 . . . P 12 130.07 96.41 106.787 1 40.69 ? CBX P42 509 R 1 HETATM 7 C CBV P42 . . . P 12 128.775 95.637 106.851 1 41.64 ? CBV P42 509 R 1 HETATM 8 C CBS P42 . . . P 12 128.126 95.436 105.506 1 40.46 ? CBS P42 509 R 1 HETATM 9 C CBH P42 . . . P 12 128.968 94.675 104.514 1 40.46 ? CBH P42 509 R 1 HETATM 10 C CAQ P42 . . . P 12 128.343 94.535 103.149 1 41.23 ? CAQ P42 509 R 1 HETATM 11 C CAP P42 . . . P 12 129.203 93.793 102.157 1 40.87 ? CAP P42 509 R 1 HETATM 12 C CAO P42 . . . P 12 128.618 93.703 100.773 1 40.4 ? CAO P42 509 R 1 HETATM 13 C CAN P42 . . . P 12 129.459 92.915 99.804 1 40.99 ? CAN P42 509 R 1 HETATM 14 C CAM P42 . . . P 12 130.847 93.467 99.604 1 41.48 ? CAM P42 509 R 1 HETATM 15 C CAL P42 . . . P 12 131.718 92.639 98.696 1 41.18 ? CAL P42 509 R 1 HETATM 16 C CAK P42 . . . P 12 133.115 93.179 98.525 1 40.06 ? CAK P42 509 R 1 HETATM 17 C CAJ P42 . . . P 12 134.01 92.324 97.664 1 40.96 ? CAJ P42 509 R 1 HETATM 18 C CAI P42 . . . P 12 133.624 92.288 96.208 1 41.55 ? CAI P42 509 R 1 HETATM 19 C CAH P42 . . . P 12 134.454 91.343 95.378 1 39.82 ? CAH P42 509 R 1 HETATM 20 C CAG P42 . . . P 12 134.177 91.411 93.9 1 41.07 ? CAG P42 509 R 1 HETATM 21 C CAF P42 . . . P 12 134.733 90.25 93.117 1 40.34 ? CAF P42 509 R 1 HETATM 22 C CAE P42 . . . P 12 136.186 89.963 93.39 1 40.38 ? CAE P42 509 R 1 HETATM 23 C CAD P42 . . . P 12 136.98 89.966 92.099 1 40.74 ? CAD P42 509 R 1 HETATM 24 O OAA P42 . . . P 12 138.286 89.467 92.344 1 41.36 ? OAA P42 509 R 1 HETATM 25 O OAC P42 . . . P 12 137.01 91.28 91.596 1 41.26 ? OAC P42 509 R 1 HETATM 26 C CAB P42 . . . P 12 137.751 92.21 92.394 1 41.11 ? CAB P42 509 R 1 HETATM 27 C CBE P42 . . . P 12 137.571 93.6 91.828 1 42.2 ? CBE P42 509 R 1 HETATM 28 C CBK P42 . . . P 12 138.407 93.868 90.597 1 40.06 ? CBK P42 509 R 1 HETATM 29 O OBL P42 . . . P 12 138.04 92.94 89.543 1 43.15 ? OBL P42 509 R 1 HETATM 30 P PBM P42 . . . P 12 139.045 92.716 88.313 1 51.44 ? PBM P42 509 R 1 HETATM 31 O OBF P42 . . . P 12 140.414 92.442 88.871 1 42.55 ? OBF P42 509 R 1 HETATM 32 O OBU P42 . . . P 12 138.846 93.819 87.311 1 40.7 ? OBU P42 509 R 1 HETATM 33 O OBN P42 . . . P 12 138.494 91.35 87.679 1 43.76 ? OBN P42 509 R 1 HETATM 34 O OBD P42 . . . P 12 136.185 93.754 91.49 1 42.6 ? OBD P42 509 R 1 HETATM 35 C CBC P42 . . . P 12 135.862 95.038 91.017 1 39.98 ? CBC P42 509 R 1 HETATM 36 O OBJ P42 . . . P 12 134.635 95.032 90.311 1 43.14 ? OBJ P42 509 R 1 HETATM 37 C CBB P42 . . . P 12 135.763 96.031 92.161 1 39.65 ? CBB P42 509 R 1 HETATM 38 C CBA P42 . . . P 12 134.333 96.209 92.604 1 40.24 ? CBA P42 509 R 1 HETATM 39 C CAZ P42 . . . P 12 133.821 95.092 93.47 1 39.59 ? CAZ P42 509 R 1 HETATM 40 C CAY P42 . . . P 12 132.335 95.109 93.691 1 40.13 ? CAY P42 509 R 1 HETATM 41 C CAX P42 . . . P 12 131.848 96.23 94.567 1 39.12 ? CAX P42 509 R 1 HETATM 42 C CAW P42 . . . P 12 132.515 96.299 95.911 1 40.59 ? CAW P42 509 R 1 HETATM 43 C CAV P42 . . . P 12 131.914 97.317 96.84 1 40.77 ? CAV P42 509 R 1 HETATM 44 C CAU P42 . . . P 12 130.567 96.932 97.39 1 40.89 ? CAU P42 509 R 1 HETATM 45 C CAT P42 . . . P 12 129.987 97.947 98.336 1 40.5 ? CAT P42 509 R 1 HETATM 46 C CAS P42 . . . P 12 128.828 97.45 99.16 1 40.19 ? CAS P42 509 R 1 HETATM 47 C CAR P42 . . . P 12 128.319 98.464 100.152 1 40.81 ? CAR P42 509 R 1 HETATM 48 C CBI P42 . . . P 12 127.47 97.886 101.252 1 40.92 ? CBI P42 509 R 1 HETATM 49 C CBT P42 . . . P 12 127.202 98.839 102.388 1 42.14 ? CBT P42 509 R 1 HETATM 50 C CBW P42 . . . P 12 126.529 98.205 103.573 1 40.87 ? CBW P42 509 R 1 HETATM 51 C CBY P42 . . . P 12 126.581 99.065 104.809 1 40.2 ? CBY P42 509 R 1 HETATM 52 N N P42 . . . P 12 139.066 88.733 85.002 1 43.09 ? N P42 509 R 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 52 #