data_8F0Q # _model_server_result.job_id gybu9xawgu7rtKMqmCw0Iw _model_server_result.datetime_utc '2024-10-15 11:20:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f0q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1607}' # _entry.id 8F0Q # _exptl.entry_id 8F0Q _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 744.034 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8F0Q _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F0Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N ? 6 I N N ? 6 J N N ? 6 K N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O3 HO3 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O3 HO3 . sing 3 ? 2 4 3 BMA BMA C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 1601 NAG 2 n B NAG 2 B 2 NAG A 1603 NAG 2 n B BMA 3 B 3 BMA A 1605 BMA 2 n B BMA 4 B 4 BMA A 1602 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 383 A CYS 328 1_555 A SG CYS 398 A CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 764 A CYS 709 1_555 A SG CYS 772 A CYS 717 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 1066 A CYS 1011 1_555 A SG CYS 1085 A CYS 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 1423 A CYS 1368 1_555 A SG CYS 1436 A CYS 1381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? covale ? covale1 A ND2 ASN 367 A ASN 312 1_555 D C1 NAG . A NAG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale2 B O3 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale3 B O3 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale4 B O3 BMA . B BMA 3 1_555 B C1 BMA . B BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? # _chem_comp.formula 'C41 H78 N O8 P' _chem_comp.formula_weight 744.034 _chem_comp.id PEE _chem_comp.mon_nstd_flag n _chem_comp.name 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPE # _atom_sites.entry_id 8F0Q _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 BMA A 1 1601 1604 BMA BMA . D 4 NAG A 1 1602 1614 NAG NAG . E 4 NAG A 1 1603 1619 NAG NAG . F 5 X7R A 1 1604 1620 X7R DRG . G 6 PEE A 1 1605 1 PEE PEE . H 6 PEE A 1 1606 2 PEE PEE . I 6 PEE A 1 1607 3 PEE PEE . J 6 PEE A 1 1608 4 PEE PEE . K 6 PEE A 1 1609 5 PEE PEE . L 7 Y01 A 1 1610 6 Y01 CHS . M 8 HOH A 1 1701 78 HOH HOH . M 8 HOH A 2 1702 4 HOH HOH . M 8 HOH A 3 1703 66 HOH HOH . M 8 HOH A 4 1704 77 HOH HOH . M 8 HOH A 5 1705 89 HOH HOH . M 8 HOH A 6 1706 12 HOH HOH . M 8 HOH A 7 1707 26 HOH HOH . M 8 HOH A 8 1708 13 HOH HOH . M 8 HOH A 9 1709 83 HOH HOH . M 8 HOH A 10 1710 56 HOH HOH . M 8 HOH A 11 1711 17 HOH HOH . M 8 HOH A 12 1712 67 HOH HOH . M 8 HOH A 13 1713 39 HOH HOH . M 8 HOH A 14 1714 14 HOH HOH . M 8 HOH A 15 1715 52 HOH HOH . M 8 HOH A 16 1716 79 HOH HOH . M 8 HOH A 17 1717 15 HOH HOH . M 8 HOH A 18 1718 101 HOH HOH . M 8 HOH A 19 1719 87 HOH HOH . M 8 HOH A 20 1720 91 HOH HOH . M 8 HOH A 21 1721 6 HOH HOH . M 8 HOH A 22 1722 97 HOH HOH . M 8 HOH A 23 1723 47 HOH HOH . M 8 HOH A 24 1724 86 HOH HOH . M 8 HOH A 25 1725 74 HOH HOH . M 8 HOH A 26 1726 84 HOH HOH . M 8 HOH A 27 1727 100 HOH HOH . M 8 HOH A 28 1728 93 HOH HOH . M 8 HOH A 29 1729 40 HOH HOH . M 8 HOH A 30 1730 44 HOH HOH . M 8 HOH A 31 1731 2 HOH HOH . M 8 HOH A 32 1732 80 HOH HOH . M 8 HOH A 33 1733 1 HOH HOH . M 8 HOH A 34 1734 29 HOH HOH . M 8 HOH A 35 1735 25 HOH HOH . M 8 HOH A 36 1736 73 HOH HOH . M 8 HOH A 37 1737 46 HOH HOH . M 8 HOH A 38 1738 28 HOH HOH . M 8 HOH A 39 1739 23 HOH HOH . M 8 HOH A 40 1740 102 HOH HOH . M 8 HOH A 41 1741 75 HOH HOH . M 8 HOH A 42 1742 20 HOH HOH . M 8 HOH A 43 1743 33 HOH HOH . M 8 HOH A 44 1744 55 HOH HOH . M 8 HOH A 45 1745 16 HOH HOH . M 8 HOH A 46 1746 30 HOH HOH . M 8 HOH A 47 1747 35 HOH HOH . M 8 HOH A 48 1748 85 HOH HOH . M 8 HOH A 49 1749 9 HOH HOH . M 8 HOH A 50 1750 7 HOH HOH . M 8 HOH A 51 1751 76 HOH HOH . M 8 HOH A 52 1752 42 HOH HOH . M 8 HOH A 53 1753 70 HOH HOH . M 8 HOH A 54 1754 48 HOH HOH . M 8 HOH A 55 1755 3 HOH HOH . M 8 HOH A 56 1756 61 HOH HOH . M 8 HOH A 57 1757 99 HOH HOH . M 8 HOH A 58 1758 32 HOH HOH . M 8 HOH A 59 1759 21 HOH HOH . M 8 HOH A 60 1760 68 HOH HOH . M 8 HOH A 61 1761 10 HOH HOH . M 8 HOH A 62 1762 24 HOH HOH . M 8 HOH A 63 1763 49 HOH HOH . M 8 HOH A 64 1764 53 HOH HOH . M 8 HOH A 65 1765 95 HOH HOH . M 8 HOH A 66 1766 96 HOH HOH . M 8 HOH A 67 1767 60 HOH HOH . M 8 HOH A 68 1768 65 HOH HOH . M 8 HOH A 69 1769 38 HOH HOH . M 8 HOH A 70 1770 98 HOH HOH . M 8 HOH A 71 1771 27 HOH HOH . M 8 HOH A 72 1772 5 HOH HOH . M 8 HOH A 73 1773 94 HOH HOH . M 8 HOH A 74 1774 92 HOH HOH . M 8 HOH A 75 1775 45 HOH HOH . M 8 HOH A 76 1776 19 HOH HOH . M 8 HOH A 77 1777 81 HOH HOH . M 8 HOH A 78 1778 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C27 PEE . . . I 6 138.812 169.276 177.16 1 10.52 ? C27 PEE 1607 A 1 HETATM 2 C C26 PEE . . . I 6 140.151 168.891 177.737 1 9.18 ? C26 PEE 1607 A 1 HETATM 3 C C25 PEE . . . I 6 141.293 169.715 177.233 1 12.62 ? C25 PEE 1607 A 1 HETATM 4 C C24 PEE . . . I 6 142.679 169.222 177.534 1 12.52 ? C24 PEE 1607 A 1 HETATM 5 C C23 PEE . . . I 6 142.853 168.548 178.84 1 8.47 ? C23 PEE 1607 A 1 HETATM 6 C C22 PEE . . . I 6 144.281 168.38 179.273 1 12.22 ? C22 PEE 1607 A 1 HETATM 7 C C21 PEE . . . I 6 144.615 167.096 179.997 1 10.42 ? C21 PEE 1607 A 1 HETATM 8 C C20 PEE . . . I 6 146.071 166.81 180.138 1 10.36 ? C20 PEE 1607 A 1 HETATM 9 C C19 PEE . . . I 6 146.437 165.877 181.232 1 8.77 ? C19 PEE 1607 A 1 HETATM 10 C C18 PEE . . . I 6 147.693 165.117 180.976 1 6.13 ? C18 PEE 1607 A 1 HETATM 11 C C17 PEE . . . I 6 147.994 164.03 181.964 1 7.61 ? C17 PEE 1607 A 1 HETATM 12 C C16 PEE . . . I 6 147.517 164.183 183.367 1 3.67 ? C16 PEE 1607 A 1 HETATM 13 C C15 PEE . . . I 6 148.152 163.133 184.268 1 7.64 ? C15 PEE 1607 A 1 HETATM 14 C C14 PEE . . . I 6 147.49 162.921 185.593 1 9.57 ? C14 PEE 1607 A 1 HETATM 15 C C13 PEE . . . I 6 147.671 161.579 186.279 1 6.22 ? C13 PEE 1607 A 1 HETATM 16 C C12 PEE . . . I 6 147.387 161.578 187.765 1 7.02 ? C12 PEE 1607 A 1 HETATM 17 C C11 PEE . . . I 6 147.009 160.253 188.319 1 3.75 ? C11 PEE 1607 A 1 HETATM 18 C C10 PEE . . . I 6 147.324 160.048 189.787 1 11.59 ? C10 PEE 1607 A 1 HETATM 19 O O4 PEE . . . I 6 148.138 160.664 190.421 1 16.71 ? O4 PEE 1607 A 1 HETATM 20 O O2 PEE . . . I 6 146.514 159.058 190.209 1 12.93 ? O2 PEE 1607 A 1 HETATM 21 C C2 PEE . . . I 6 146.617 158.373 191.517 1 8.18 ? C2 PEE 1607 A 1 HETATM 22 C C1 PEE . . . I 6 145.8 158.916 192.683 1 11.5 ? C1 PEE 1607 A 1 HETATM 23 O O3P PEE . . . I 6 146.679 159.259 193.838 1 10.83 ? O3P PEE 1607 A 1 HETATM 24 P P PEE . . . I 6 146.089 159.657 195.295 1 32.15 ? P PEE 1607 A 1 HETATM 25 O O2P PEE . . . I 6 145.407 158.509 195.973 1 19.06 ? O2P PEE 1607 A 1 HETATM 26 O O1P PEE . . . I 6 145.4 160.993 195.225 1 14.41 ? O1P PEE 1607 A 1 HETATM 27 O O4P PEE . . . I 6 147.333 160.026 196.241 1 11.55 ? O4P PEE 1607 A 1 HETATM 28 C C4 PEE . . . I 6 147.498 161.404 196.681 1 12.43 ? C4 PEE 1607 A 1 HETATM 29 C C5 PEE . . . I 6 148.392 161.445 197.898 1 11.69 ? C5 PEE 1607 A 1 HETATM 30 N N PEE . . . I 6 147.979 160.461 198.904 1 13.22 ? N PEE 1607 A 1 HETATM 31 C C3 PEE . . . I 6 146.417 156.885 191.301 1 10.03 ? C3 PEE 1607 A 1 HETATM 32 O O3 PEE . . . I 6 145.414 156.67 190.275 1 11.7 ? O3 PEE 1607 A 1 HETATM 33 C C30 PEE . . . I 6 145.402 155.494 189.674 1 12.72 ? C30 PEE 1607 A 1 HETATM 34 O O5 PEE . . . I 6 145.706 154.471 190.242 1 15.31 ? O5 PEE 1607 A 1 HETATM 35 C C31 PEE . . . I 6 144.962 155.586 188.21 1 9.14 ? C31 PEE 1607 A 1 HETATM 36 C C32 PEE . . . I 6 145.447 156.774 187.447 1 10.99 ? C32 PEE 1607 A 1 HETATM 37 C C33 PEE . . . I 6 144.975 156.808 185.992 1 9.1 ? C33 PEE 1607 A 1 HETATM 38 C C34 PEE . . . I 6 145.396 158.037 185.233 1 8.56 ? C34 PEE 1607 A 1 HETATM 39 C C35 PEE . . . I 6 144.513 158.496 184.083 1 10.74 ? C35 PEE 1607 A 1 HETATM 40 C C36 PEE . . . I 6 144.479 159.981 183.827 1 7.4 ? C36 PEE 1607 A 1 HETATM 41 C C37 PEE . . . I 6 143.861 160.359 182.517 1 11.3 ? C37 PEE 1607 A 1 HETATM 42 C C38 PEE . . . I 6 143.167 161.674 182.496 1 10.67 ? C38 PEE 1607 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 42 #