data_8F0Q # _model_server_result.job_id lqAy7YqsfIa9Xy0vRO1a3w _model_server_result.datetime_utc '2024-10-15 11:27:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f0q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1608}' # _entry.id 8F0Q # _exptl.entry_id 8F0Q _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 744.034 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8F0Q _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F0Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N ? 6 I N N ? 6 J N N ? 6 K N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O3 HO3 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O3 HO3 . sing 3 ? 2 4 3 BMA BMA C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 1601 NAG 2 n B NAG 2 B 2 NAG A 1603 NAG 2 n B BMA 3 B 3 BMA A 1605 BMA 2 n B BMA 4 B 4 BMA A 1602 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 383 A CYS 328 1_555 A SG CYS 398 A CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 764 A CYS 709 1_555 A SG CYS 772 A CYS 717 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 1066 A CYS 1011 1_555 A SG CYS 1085 A CYS 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 1423 A CYS 1368 1_555 A SG CYS 1436 A CYS 1381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? covale ? covale1 A ND2 ASN 367 A ASN 312 1_555 D C1 NAG . A NAG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale2 B O3 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale3 B O3 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale4 B O3 BMA . B BMA 3 1_555 B C1 BMA . B BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? # _chem_comp.formula 'C41 H78 N O8 P' _chem_comp.formula_weight 744.034 _chem_comp.id PEE _chem_comp.mon_nstd_flag n _chem_comp.name 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPE # _atom_sites.entry_id 8F0Q _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 BMA A 1 1601 1604 BMA BMA . D 4 NAG A 1 1602 1614 NAG NAG . E 4 NAG A 1 1603 1619 NAG NAG . F 5 X7R A 1 1604 1620 X7R DRG . G 6 PEE A 1 1605 1 PEE PEE . H 6 PEE A 1 1606 2 PEE PEE . I 6 PEE A 1 1607 3 PEE PEE . J 6 PEE A 1 1608 4 PEE PEE . K 6 PEE A 1 1609 5 PEE PEE . L 7 Y01 A 1 1610 6 Y01 CHS . M 8 HOH A 1 1701 78 HOH HOH . M 8 HOH A 2 1702 4 HOH HOH . M 8 HOH A 3 1703 66 HOH HOH . M 8 HOH A 4 1704 77 HOH HOH . M 8 HOH A 5 1705 89 HOH HOH . M 8 HOH A 6 1706 12 HOH HOH . M 8 HOH A 7 1707 26 HOH HOH . M 8 HOH A 8 1708 13 HOH HOH . M 8 HOH A 9 1709 83 HOH HOH . M 8 HOH A 10 1710 56 HOH HOH . M 8 HOH A 11 1711 17 HOH HOH . M 8 HOH A 12 1712 67 HOH HOH . M 8 HOH A 13 1713 39 HOH HOH . M 8 HOH A 14 1714 14 HOH HOH . M 8 HOH A 15 1715 52 HOH HOH . M 8 HOH A 16 1716 79 HOH HOH . M 8 HOH A 17 1717 15 HOH HOH . M 8 HOH A 18 1718 101 HOH HOH . M 8 HOH A 19 1719 87 HOH HOH . M 8 HOH A 20 1720 91 HOH HOH . M 8 HOH A 21 1721 6 HOH HOH . M 8 HOH A 22 1722 97 HOH HOH . M 8 HOH A 23 1723 47 HOH HOH . M 8 HOH A 24 1724 86 HOH HOH . M 8 HOH A 25 1725 74 HOH HOH . M 8 HOH A 26 1726 84 HOH HOH . M 8 HOH A 27 1727 100 HOH HOH . M 8 HOH A 28 1728 93 HOH HOH . M 8 HOH A 29 1729 40 HOH HOH . M 8 HOH A 30 1730 44 HOH HOH . M 8 HOH A 31 1731 2 HOH HOH . M 8 HOH A 32 1732 80 HOH HOH . M 8 HOH A 33 1733 1 HOH HOH . M 8 HOH A 34 1734 29 HOH HOH . M 8 HOH A 35 1735 25 HOH HOH . M 8 HOH A 36 1736 73 HOH HOH . M 8 HOH A 37 1737 46 HOH HOH . M 8 HOH A 38 1738 28 HOH HOH . M 8 HOH A 39 1739 23 HOH HOH . M 8 HOH A 40 1740 102 HOH HOH . M 8 HOH A 41 1741 75 HOH HOH . M 8 HOH A 42 1742 20 HOH HOH . M 8 HOH A 43 1743 33 HOH HOH . M 8 HOH A 44 1744 55 HOH HOH . M 8 HOH A 45 1745 16 HOH HOH . M 8 HOH A 46 1746 30 HOH HOH . M 8 HOH A 47 1747 35 HOH HOH . M 8 HOH A 48 1748 85 HOH HOH . M 8 HOH A 49 1749 9 HOH HOH . M 8 HOH A 50 1750 7 HOH HOH . M 8 HOH A 51 1751 76 HOH HOH . M 8 HOH A 52 1752 42 HOH HOH . M 8 HOH A 53 1753 70 HOH HOH . M 8 HOH A 54 1754 48 HOH HOH . M 8 HOH A 55 1755 3 HOH HOH . M 8 HOH A 56 1756 61 HOH HOH . M 8 HOH A 57 1757 99 HOH HOH . M 8 HOH A 58 1758 32 HOH HOH . M 8 HOH A 59 1759 21 HOH HOH . M 8 HOH A 60 1760 68 HOH HOH . M 8 HOH A 61 1761 10 HOH HOH . M 8 HOH A 62 1762 24 HOH HOH . M 8 HOH A 63 1763 49 HOH HOH . M 8 HOH A 64 1764 53 HOH HOH . M 8 HOH A 65 1765 95 HOH HOH . M 8 HOH A 66 1766 96 HOH HOH . M 8 HOH A 67 1767 60 HOH HOH . M 8 HOH A 68 1768 65 HOH HOH . M 8 HOH A 69 1769 38 HOH HOH . M 8 HOH A 70 1770 98 HOH HOH . M 8 HOH A 71 1771 27 HOH HOH . M 8 HOH A 72 1772 5 HOH HOH . M 8 HOH A 73 1773 94 HOH HOH . M 8 HOH A 74 1774 92 HOH HOH . M 8 HOH A 75 1775 45 HOH HOH . M 8 HOH A 76 1776 19 HOH HOH . M 8 HOH A 77 1777 81 HOH HOH . M 8 HOH A 78 1778 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C20 PEE . . . J 6 160.322 182.795 173.327 1 6.4 ? C20 PEE 1608 A 1 HETATM 2 C C19 PEE . . . J 6 159.49 182.32 174.455 1 2.15 ? C19 PEE 1608 A 1 HETATM 3 C C18 PEE . . . J 6 159.914 182.791 175.817 1 4.68 ? C18 PEE 1608 A 1 HETATM 4 C C17 PEE . . . J 6 160.058 181.655 176.785 1 3.64 ? C17 PEE 1608 A 1 HETATM 5 C C16 PEE . . . J 6 160.821 181.981 178.022 1 2.07 ? C16 PEE 1608 A 1 HETATM 6 C C15 PEE . . . J 6 160.046 182.903 178.938 1 4.11 ? C15 PEE 1608 A 1 HETATM 7 C C14 PEE . . . J 6 160.093 182.559 180.396 1 5.58 ? C14 PEE 1608 A 1 HETATM 8 C C13 PEE . . . J 6 159.488 183.589 181.327 1 2.12 ? C13 PEE 1608 A 1 HETATM 9 C C12 PEE . . . J 6 160.106 183.705 182.696 1 3.04 ? C12 PEE 1608 A 1 HETATM 10 C C11 PEE . . . J 6 159.221 184.358 183.692 1 3.28 ? C11 PEE 1608 A 1 HETATM 11 C C10 PEE . . . J 6 159.571 184.028 185.126 1 2.57 ? C10 PEE 1608 A 1 HETATM 12 O O4 PEE . . . J 6 160.047 182.991 185.49 1 14.36 ? O4 PEE 1608 A 1 HETATM 13 O O2 PEE . . . J 6 159.277 185.111 185.86 1 3.5 ? O2 PEE 1608 A 1 HETATM 14 C C2 PEE . . . J 6 158.12 185.291 186.752 1 3.97 ? C2 PEE 1608 A 1 HETATM 15 C C1 PEE . . . J 6 158.381 185.393 188.244 1 4.6 ? C1 PEE 1608 A 1 HETATM 16 O O3P PEE . . . J 6 157.137 185.793 188.972 1 12.29 ? O3P PEE 1608 A 1 HETATM 17 P P PEE . . . J 6 157.043 186.087 190.574 1 41.03 ? P PEE 1608 A 1 HETATM 18 O O2P PEE . . . J 6 156.437 187.424 190.881 1 14.04 ? O2P PEE 1608 A 1 HETATM 19 O O1P PEE . . . J 6 156.558 184.88 191.335 1 12.38 ? O1P PEE 1608 A 1 HETATM 20 O O4P PEE . . . J 6 158.55 186.195 191.097 1 7.86 ? O4P PEE 1608 A 1 HETATM 21 C C4 PEE . . . J 6 158.8 186.528 192.484 1 6.15 ? C4 PEE 1608 A 1 HETATM 22 C C5 PEE . . . J 6 158.732 185.258 193.293 1 5.95 ? C5 PEE 1608 A 1 HETATM 23 N N PEE . . . J 6 160.045 184.9 193.845 1 12.02 ? N PEE 1608 A 1 HETATM 24 C C3 PEE . . . J 6 157.332 186.47 186.199 1 10.17 ? C3 PEE 1608 A 1 HETATM 25 O O3 PEE . . . J 6 158.279 187.51 185.824 1 13.34 ? O3 PEE 1608 A 1 HETATM 26 C C30 PEE . . . J 6 158.746 188.319 186.764 1 12.3 ? C30 PEE 1608 A 1 HETATM 27 O O5 PEE . . . J 6 158.265 188.385 187.868 1 12.61 ? O5 PEE 1608 A 1 HETATM 28 C C31 PEE . . . J 6 159.954 189.147 186.298 1 6.97 ? C31 PEE 1608 A 1 HETATM 29 C C32 PEE . . . J 6 160.642 188.698 185.044 1 5.46 ? C32 PEE 1608 A 1 HETATM 30 C C33 PEE . . . J 6 160.028 189.232 183.751 1 5.28 ? C33 PEE 1608 A 1 HETATM 31 C C34 PEE . . . J 6 160.025 188.272 182.593 1 4.34 ? C34 PEE 1608 A 1 HETATM 32 C C35 PEE . . . J 6 160.486 188.772 181.235 1 3.36 ? C35 PEE 1608 A 1 HETATM 33 C C36 PEE . . . J 6 160.521 187.718 180.16 1 5.55 ? C36 PEE 1608 A 1 HETATM 34 C C37 PEE . . . J 6 161.14 188.151 178.867 1 4.13 ? C37 PEE 1608 A 1 HETATM 35 C C38 PEE . . . J 6 161.532 187.046 177.947 1 6.69 ? C38 PEE 1608 A 1 HETATM 36 C C39 PEE . . . J 6 161.305 187.302 176.499 1 5.02 ? C39 PEE 1608 A 1 HETATM 37 C C40 PEE . . . J 6 162.516 187.838 175.814 1 7.84 ? C40 PEE 1608 A 1 HETATM 38 C C41 PEE . . . J 6 163.297 186.845 175.027 1 6.98 ? C41 PEE 1608 A 1 HETATM 39 C C42 PEE . . . J 6 163.321 187.123 173.563 1 6.5 ? C42 PEE 1608 A 1 HETATM 40 C C43 PEE . . . J 6 163.9 186.018 172.727 1 6.43 ? C43 PEE 1608 A 1 HETATM 41 C C44 PEE . . . J 6 164.248 186.407 171.32 1 4.39 ? C44 PEE 1608 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 41 #