data_8F0S # _model_server_result.job_id dk2dFIXMNiCTC1093pQemw _model_server_result.datetime_utc '2024-11-22 20:31:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f0s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1606}' # _entry.id 8F0S # _exptl.entry_id 8F0S _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 744.034 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8F0S _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F0S _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O3 HO3 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O3 HO3 . sing 3 ? 3 4 3 BMA BMA C1 O1 . O3 HO3 . sing 4 ? 3 5 3 BMA BMA C1 O1 . O6 HO6 . sing 5 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG A 1601 NAG 3 n C NAG 2 C 2 NAG A 1603 NAG 3 n C BMA 3 C 3 BMA A 1605 BMA 3 n C BMA 4 C 4 BMA A 1602 BMA 3 n C BMA 5 C 5 BMA A 1604 BMA 4 n D NAG 1 D 1 NAG A 1619 NAG 4 n D NAG 2 D 2 NAG A 1620 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 383 A CYS 328 1_555 A SG CYS 398 A CYS 343 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 764 A CYS 709 1_555 A SG CYS 772 A CYS 717 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 1066 A CYS 1011 1_555 A SG CYS 1085 A CYS 1030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 1423 A CYS 1368 1_555 A SG CYS 1436 A CYS 1381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 B SG CYS 27 B CYS 13 1_555 B SG CYS 40 B CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 B SG CYS 34 B CYS 20 1_555 B SG CYS 54 B CYS 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf7 B SG CYS 34 B CYS 20 1_555 B SG CYS 68 B CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf8 B SG CYS 56 B CYS 42 1_555 B SG CYS 66 B CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 A ND2 ASN 367 A ASN 312 1_555 G C1 NAG . A NAG 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 A ND2 ASN 1070 A ASN 1015 1_555 F C1 NAG . A NAG 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 A ND2 ASN 1083 A ASN 1028 1_555 H C1 NAG . A NAG 1604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale4 C O3 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale5 C O3 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale6 C O3 BMA . C BMA 3 1_555 C C1 BMA . C BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale7 C O6 BMA . C BMA 3 1_555 C C1 BMA . C BMA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale8 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C41 H78 N O8 P' _chem_comp.formula_weight 744.034 _chem_comp.id PEE _chem_comp.mon_nstd_flag n _chem_comp.name 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPE # _atom_sites.entry_id 8F0S _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG A 1 1601 1609 NAG NAG . F 5 NAG A 1 1602 1612 NAG NAG . G 5 NAG A 1 1603 1614 NAG NAG . H 5 NAG A 1 1604 1621 NAG NAG . I 6 X80 A 1 1605 1701 X80 DRG . J 7 PEE A 1 1606 3 PEE PEE . K 8 Y01 A 1 1607 6 Y01 CHS . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C27 PEE . . . J 7 136.414 165.672 173.225 1 19.88 ? C27 PEE 1606 A 1 HETATM 2 C C26 PEE . . . J 7 137.685 165.307 173.947 1 19.88 ? C26 PEE 1606 A 1 HETATM 3 C C25 PEE . . . J 7 138.339 166.444 174.668 1 19.88 ? C25 PEE 1606 A 1 HETATM 4 C C24 PEE . . . J 7 139.822 166.338 174.872 1 19.88 ? C24 PEE 1606 A 1 HETATM 5 C C23 PEE . . . J 7 140.227 165.571 176.068 1 19.88 ? C23 PEE 1606 A 1 HETATM 6 C C22 PEE . . . J 7 141.703 165.531 176.341 1 19.88 ? C22 PEE 1606 A 1 HETATM 7 C C21 PEE . . . J 7 142.175 164.328 177.131 1 19.88 ? C21 PEE 1606 A 1 HETATM 8 C C20 PEE . . . J 7 143.65 164.119 177.181 1 19.88 ? C20 PEE 1606 A 1 HETATM 9 C C19 PEE . . . J 7 144.055 162.926 177.962 1 19.88 ? C19 PEE 1606 A 1 HETATM 10 C C18 PEE . . . J 7 145.526 162.763 178.179 1 19.88 ? C18 PEE 1606 A 1 HETATM 11 C C17 PEE . . . J 7 145.831 161.485 178.899 1 19.88 ? C17 PEE 1606 A 1 HETATM 12 C C16 PEE . . . J 7 145.737 161.574 180.382 1 19.88 ? C16 PEE 1606 A 1 HETATM 13 C C15 PEE . . . J 7 145.261 160.293 181.04 1 19.88 ? C15 PEE 1606 A 1 HETATM 14 C C14 PEE . . . J 7 145.679 160.166 182.473 1 19.88 ? C14 PEE 1606 A 1 HETATM 15 C C13 PEE . . . J 7 145.266 158.917 183.222 1 19.88 ? C13 PEE 1606 A 1 HETATM 16 C C12 PEE . . . J 7 145.64 158.939 184.684 1 19.88 ? C12 PEE 1606 A 1 HETATM 17 C C11 PEE . . . J 7 144.958 157.922 185.518 1 19.88 ? C11 PEE 1606 A 1 HETATM 18 C C10 PEE . . . J 7 145.195 158.154 186.993 1 19.88 ? C10 PEE 1606 A 1 HETATM 19 O O4 PEE . . . J 7 145.781 159.108 187.422 1 19.88 ? O4 PEE 1606 A 1 HETATM 20 O O2 PEE . . . J 7 144.665 157.121 187.685 1 19.88 ? O2 PEE 1606 A 1 HETATM 21 C C2 PEE . . . J 7 145.323 156.526 188.873 1 19.88 ? C2 PEE 1606 A 1 HETATM 22 C C1 PEE . . . J 7 144.712 156.81 190.239 1 19.88 ? C1 PEE 1606 A 1 HETATM 23 O O3P PEE . . . J 7 145.375 155.983 191.291 1 19.88 ? O3P PEE 1606 A 1 HETATM 24 P P PEE . . . J 7 144.888 155.982 192.841 1 19.88 ? P PEE 1606 A 1 HETATM 25 O O2P PEE . . . J 7 143.504 155.435 193.023 1 19.88 ? O2P PEE 1606 A 1 HETATM 26 O O1P PEE . . . J 7 145.262 157.274 193.519 1 19.88 ? O1P PEE 1606 A 1 HETATM 27 O O4P PEE . . . J 7 145.84 154.966 193.624 1 19.88 ? O4P PEE 1606 A 1 HETATM 28 C C4 PEE . . . J 7 145.645 154.836 195.052 1 19.88 ? C4 PEE 1606 A 1 HETATM 29 C C5 PEE . . . J 7 146.571 153.757 195.554 1 19.88 ? C5 PEE 1606 A 1 HETATM 30 N N PEE . . . J 7 146.311 152.484 194.872 1 19.88 ? N PEE 1606 A 1 HETATM 31 C C3 PEE . . . J 7 145.618 155.05 188.658 1 19.88 ? C3 PEE 1606 A 1 HETATM 32 O O3 PEE . . . J 7 144.394 154.273 188.684 1 19.88 ? O3 PEE 1606 A 1 HETATM 33 C C30 PEE . . . J 7 144.499 152.964 188.55 1 19.88 ? C30 PEE 1606 A 1 HETATM 34 O O5 PEE . . . J 7 145.032 152.265 189.374 1 19.88 ? O5 PEE 1606 A 1 HETATM 35 C C31 PEE . . . J 7 143.868 152.47 187.241 1 19.88 ? C31 PEE 1606 A 1 HETATM 36 C C32 PEE . . . J 7 143.475 153.547 186.274 1 19.88 ? C32 PEE 1606 A 1 HETATM 37 C C33 PEE . . . J 7 143.718 153.207 184.81 1 19.88 ? C33 PEE 1606 A 1 HETATM 38 C C34 PEE . . . J 7 143.66 154.401 183.896 1 19.88 ? C34 PEE 1606 A 1 HETATM 39 C C35 PEE . . . J 7 143.193 154.166 182.475 1 19.88 ? C35 PEE 1606 A 1 HETATM 40 C C36 PEE . . . J 7 142.799 155.403 181.712 1 19.88 ? C36 PEE 1606 A 1 HETATM 41 C C37 PEE . . . J 7 142.407 155.141 180.29 1 19.88 ? C37 PEE 1606 A 1 HETATM 42 C C38 PEE . . . J 7 142.306 156.344 179.422 1 19.88 ? C38 PEE 1606 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 42 #