data_8F0Z
#
_model_server_result.job_id            9wLcVhr0Ss3BRkLQ85a4lw 
_model_server_result.datetime_utc      '2025-07-08 12:15:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8f0z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":101}' 
#
_entry.id    8F0Z 
#
_exptl.entry_id    8F0Z 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              192.214 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "N,N'-(1,4-phenylene)diacetamide" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8F0Z 
_cell.length_a            40.871 
_cell.length_b            81.357 
_cell.length_c            34.975 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8F0Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C DPR 3 B DPR 2 1_555 B N DAL 4 B DAL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale2 B C DAL 4 B DAL 3 1_555 B N DHI 5 B DHI 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale3 B C DHI 5 B DHI 4 1_555 B N DTR 6 B DTR 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale4 B C DTR 6 B DTR 5 1_555 B N DTY 7 B DTY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale5 B C DTY 7 B DTY 6 1_555 B N DCY 8 B DCY 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale6 B C DCY 8 B DCY 7 1_555 B N DAS 9 B DAS 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale7 B SG DCY 8 B DCY 7 1_555 D CH WHL . B WHL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.763 ? 
covale ? covale8 B C DAS 9 B DAS 8 1_555 B N DPN 10 B DPN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale9 B C DPN 10 B DPN 9 1_555 B N DAL 11 B DAL 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale10 B C DAL 11 B DAL 10 1_555 B N DAL 12 B DAL 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale11 B C DAL 12 B DAL 11 1_555 B N DGN 13 B DGN 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale12 B C DGN 13 B DGN 12 1_555 B N DVA 14 B DVA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale13 B C DVA 14 B DVA 13 1_555 B N DCY 15 B DCY 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale14 B C DCY 15 B DCY 14 1_555 B N DSG 16 B DSG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale15 B SG DCY 15 B DCY 14 1_555 D CK WHL . B WHL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.763 ? 
covale ? covale16 B C DSG 16 B DSG 15 1_555 B N DPN 17 B DPN 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale17 B C DPN 17 B DPN 16 1_555 B N DSN 18 B DSN 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale18 B C DSN 18 B DSN 17 1_555 B N NH2 19 B NH2 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
#
_chem_comp.formula           'C10 H12 N2 O2' 
_chem_comp.formula_weight    192.214 
_chem_comp.id                WHL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "N,N'-(1,4-phenylene)diacetamide" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CK CJ WHL sing 575 n n 
CJ NB WHL sing 576 n n 
CJ OA WHL doub 577 n n 
NB CC WHL sing 578 n n 
CC CB WHL doub 579 n y 
CC CD WHL sing 580 n y 
CB CA WHL sing 581 n y 
CD CE WHL doub 582 n y 
CA CF WHL doub 583 n y 
CE CF WHL sing 584 n y 
CF NA WHL sing 585 n n 
OB CG WHL doub 586 n n 
NA CG WHL sing 587 n n 
CG CH WHL sing 588 n n 
CA H1 WHL sing 589 n n 
CB H2 WHL sing 590 n n 
NB H3 WHL sing 591 n n 
CD H4 WHL sing 592 n n 
CE H5 WHL sing 593 n n 
CH H6 WHL sing 594 n n 
CH H7 WHL sing 595 n n 
CH H8 WHL sing 596 n n 
CK H9 WHL sing 597 n n 
CK H10 WHL sing 598 n n 
CK H11 WHL sing 599 n n 
NA H12 WHL sing 600 n n 
#
_atom_sites.entry_id                     8F0Z 
_atom_sites.fract_transf_matrix[1][1]    0.024467 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012292 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.028592 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CL A 1 201 1 CL CL . 
D 4 WHL B 1 101 101 WHL WHL . 
E 5 HOH A 1 301 101 HOH HOH . 
E 5 HOH A 2 302 86 HOH HOH . 
E 5 HOH A 3 303 49 HOH HOH . 
E 5 HOH A 4 304 22 HOH HOH . 
E 5 HOH A 5 305 43 HOH HOH . 
E 5 HOH A 6 306 56 HOH HOH . 
E 5 HOH A 7 307 12 HOH HOH . 
E 5 HOH A 8 308 48 HOH HOH . 
E 5 HOH A 9 309 57 HOH HOH . 
E 5 HOH A 10 310 61 HOH HOH . 
E 5 HOH A 11 311 15 HOH HOH . 
E 5 HOH A 12 312 88 HOH HOH . 
E 5 HOH A 13 313 50 HOH HOH . 
E 5 HOH A 14 314 8 HOH HOH . 
E 5 HOH A 15 315 58 HOH HOH . 
E 5 HOH A 16 316 54 HOH HOH . 
E 5 HOH A 17 317 51 HOH HOH . 
E 5 HOH A 18 318 13 HOH HOH . 
E 5 HOH A 19 319 33 HOH HOH . 
E 5 HOH A 20 320 23 HOH HOH . 
E 5 HOH A 21 321 53 HOH HOH . 
E 5 HOH A 22 322 41 HOH HOH . 
E 5 HOH A 23 323 28 HOH HOH . 
E 5 HOH A 24 324 59 HOH HOH . 
E 5 HOH A 25 325 46 HOH HOH . 
E 5 HOH A 26 326 95 HOH HOH . 
E 5 HOH A 27 327 45 HOH HOH . 
E 5 HOH A 28 328 29 HOH HOH . 
E 5 HOH A 29 329 37 HOH HOH . 
E 5 HOH A 30 330 7 HOH HOH . 
E 5 HOH A 31 331 10 HOH HOH . 
E 5 HOH A 32 332 32 HOH HOH . 
E 5 HOH A 33 333 38 HOH HOH . 
E 5 HOH A 34 334 62 HOH HOH . 
E 5 HOH A 35 335 100 HOH HOH . 
E 5 HOH A 36 336 83 HOH HOH . 
E 5 HOH A 37 337 9 HOH HOH . 
E 5 HOH A 38 338 42 HOH HOH . 
E 5 HOH A 39 339 102 HOH HOH . 
E 5 HOH A 40 340 44 HOH HOH . 
E 5 HOH A 41 341 90 HOH HOH . 
E 5 HOH A 42 342 64 HOH HOH . 
E 5 HOH A 43 343 94 HOH HOH . 
E 5 HOH A 44 344 93 HOH HOH . 
E 5 HOH A 45 345 92 HOH HOH . 
E 5 HOH A 46 346 1 HOH HOH . 
E 5 HOH A 47 347 63 HOH HOH . 
E 5 HOH A 48 348 6 HOH HOH . 
E 5 HOH A 49 349 3 HOH HOH . 
E 5 HOH A 50 350 52 HOH HOH . 
E 5 HOH A 51 351 5 HOH HOH . 
E 5 HOH A 52 352 2 HOH HOH . 
E 5 HOH A 53 353 82 HOH HOH . 
E 5 HOH A 54 354 91 HOH HOH . 
E 5 HOH A 55 355 69 HOH HOH . 
E 5 HOH A 56 356 71 HOH HOH . 
E 5 HOH A 57 357 77 HOH HOH . 
E 5 HOH A 58 358 87 HOH HOH . 
F 5 HOH B 1 201 27 HOH HOH . 
F 5 HOH B 2 202 19 HOH HOH . 
F 5 HOH B 3 203 16 HOH HOH . 
F 5 HOH B 4 204 67 HOH HOH . 
F 5 HOH B 5 205 20 HOH HOH . 
F 5 HOH B 6 206 96 HOH HOH . 
F 5 HOH B 7 207 36 HOH HOH . 
F 5 HOH B 8 208 21 HOH HOH . 
F 5 HOH B 9 209 24 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CA WHL . . . D 4 14.539 18.918 -0.72 1 28.92 ? CA WHL 101 B 1 
HETATM 2 C CB WHL . . . D 4 13.375 19.297 -1.362 1 30.09 ? CB WHL 101 B 1 
HETATM 3 N NB WHL . . . D 4 11.21 18.66 -2.385 1 27.07 ? NB WHL 101 B 1 
HETATM 4 O OB WHL . . . D 4 16.092 14.972 0.085 1 32.64 ? OB WHL 101 B 1 
HETATM 5 C CG WHL . . . D 4 16.634 15.955 0.463 1 32.58 ? CG WHL 101 B 1 
HETATM 6 C CD WHL . . . D 4 12.707 16.997 -1.399 1 25.7 ? CD WHL 101 B 1 
HETATM 7 C CE WHL . . . D 4 13.877 16.619 -0.753 1 29.63 ? CE WHL 101 B 1 
HETATM 8 C CH WHL . . . D 4 17.973 15.843 1.192 1 42.22 ? CH WHL 101 B 1 
HETATM 9 C CC WHL . . . D 4 12.45 18.328 -1.699 1 27.56 ? CC WHL 101 B 1 
HETATM 10 C CF WHL . . . D 4 14.802 17.59 -0.41 1 28.47 ? CF WHL 101 B 1 
HETATM 11 C CJ WHL . . . D 4 10.693 19.994 -2.655 1 28.98 ? CJ WHL 101 B 1 
HETATM 12 C CK WHL . . . D 4 9.368 20.09 -3.407 1 32.66 ? CK WHL 101 B 1 
HETATM 13 N NA WHL . . . D 4 16.059 17.283 0.267 1 26.6 ? NA WHL 101 B 1 
HETATM 14 O OA WHL . . . D 4 11.252 20.985 -2.315 1 30.13 ? OA WHL 101 B 1 
#
_model_server_stats.io_time_ms              35 
_model_server_stats.parse_time_ms           42 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           677 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#