data_8F10
#
_model_server_result.job_id            XwGjkPp1VGgfQQ0YKSQETA 
_model_server_result.datetime_utc      '2024-11-13 16:56:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8f10 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":102}' 
#
_entry.id    8F10 
#
_exptl.entry_id    8F10 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.44 
_cell.angle_gamma         90 
_cell.entry_id            8F10 
_cell.length_a            28.15 
_cell.length_b            39.92 
_cell.length_c            42.36 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8F10 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 H N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C DAL 4 B DAL 3 1_555 B N DTR 5 B DTR 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale2 B C DTR 5 B DTR 4 1_555 B N DSG 6 B DSG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale3 B C DSG 6 B DSG 5 1_555 B N DHI 7 B DHI 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 B C DHI 7 B DHI 6 1_555 B N DCY 8 B DCY 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale5 B C DCY 8 B DCY 7 1_555 B N DGL 9 B DGL 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale6 B SG DCY 8 B DCY 7 1_555 I CH WHL . B WHL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.775 ? 
covale ? covale7 B C DGL 9 B DGL 8 1_555 B N DTY 10 B DTY 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale8 B C DTY 10 B DTY 9 1_555 B N DAL 11 B DAL 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale9 B C DAL 11 B DAL 10 1_555 B N DAL 12 B DAL 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale10 B C DAL 12 B DAL 11 1_555 B N DPN 13 B DPN 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale11 B C DPN 13 B DPN 12 1_555 B N DVA 14 B DVA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? 
covale ? covale12 B C DVA 14 B DVA 13 1_555 B N DCY 15 B DCY 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale13 B C DCY 15 B DCY 14 1_555 B N DSN 16 B DSN 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale14 B SG DCY 15 B DCY 14 1_555 I CK WHL . B WHL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.771 ? 
covale ? covale15 B C DSN 16 B DSN 15 1_555 B N DGL 17 B DGL 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? 
covale ? covale16 B C DGL 17 B DGL 16 1_555 B N DVA 18 B DVA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale17 B C DVA 18 B DVA 17 1_555 B N NH2 19 B NH2 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 307 n n 
C1 C2 EDO sing 308 n n 
C1 H11 EDO sing 309 n n 
C1 H12 EDO sing 310 n n 
O1 HO1 EDO sing 311 n n 
C2 O2 EDO sing 312 n n 
C2 H21 EDO sing 313 n n 
C2 H22 EDO sing 314 n n 
O2 HO2 EDO sing 315 n n 
#
_atom_sites.entry_id                     8F10 
_atom_sites.fract_transf_matrix[1][1]    0.035524 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003386 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02505 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.023714 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 EDO A 1 201 2 EDO EDO . 
D 3 EDO A 1 202 3 EDO EDO . 
E 4 CL A 1 203 4 CL CL . 
F 5 GOL A 1 204 6 GOL GOL . 
G 5 GOL A 1 205 7 GOL GOL . 
H 3 EDO A 1 206 8 EDO EDO . 
I 6 WHL B 1 101 101 WHL WHL . 
J 3 EDO B 1 102 1 EDO EDO . 
K 7 IMD B 1 103 5 IMD IMD . 
L 8 HOH A 1 301 60 HOH HOH . 
L 8 HOH A 2 302 37 HOH HOH . 
L 8 HOH A 3 303 31 HOH HOH . 
L 8 HOH A 4 304 30 HOH HOH . 
L 8 HOH A 5 305 23 HOH HOH . 
L 8 HOH A 6 306 29 HOH HOH . 
L 8 HOH A 7 307 95 HOH HOH . 
L 8 HOH A 8 308 42 HOH HOH . 
L 8 HOH A 9 309 40 HOH HOH . 
L 8 HOH A 10 310 33 HOH HOH . 
L 8 HOH A 11 311 121 HOH HOH . 
L 8 HOH A 12 312 43 HOH HOH . 
L 8 HOH A 13 313 3 HOH HOH . 
L 8 HOH A 14 314 2 HOH HOH . 
L 8 HOH A 15 315 22 HOH HOH . 
L 8 HOH A 16 316 69 HOH HOH . 
L 8 HOH A 17 317 50 HOH HOH . 
L 8 HOH A 18 318 19 HOH HOH . 
L 8 HOH A 19 319 15 HOH HOH . 
L 8 HOH A 20 320 34 HOH HOH . 
L 8 HOH A 21 321 38 HOH HOH . 
L 8 HOH A 22 322 63 HOH HOH . 
L 8 HOH A 23 323 66 HOH HOH . 
L 8 HOH A 24 324 7 HOH HOH . 
L 8 HOH A 25 325 11 HOH HOH . 
L 8 HOH A 26 326 18 HOH HOH . 
L 8 HOH A 27 327 58 HOH HOH . 
L 8 HOH A 28 328 56 HOH HOH . 
L 8 HOH A 29 329 12 HOH HOH . 
L 8 HOH A 30 330 21 HOH HOH . 
L 8 HOH A 31 331 47 HOH HOH . 
L 8 HOH A 32 332 79 HOH HOH . 
L 8 HOH A 33 333 57 HOH HOH . 
L 8 HOH A 34 334 24 HOH HOH . 
L 8 HOH A 35 335 1 HOH HOH . 
L 8 HOH A 36 336 89 HOH HOH . 
L 8 HOH A 37 337 55 HOH HOH . 
L 8 HOH A 38 338 85 HOH HOH . 
L 8 HOH A 39 339 32 HOH HOH . 
L 8 HOH A 40 340 4 HOH HOH . 
L 8 HOH A 41 341 45 HOH HOH . 
L 8 HOH A 42 342 68 HOH HOH . 
L 8 HOH A 43 343 49 HOH HOH . 
L 8 HOH A 44 344 102 HOH HOH . 
L 8 HOH A 45 345 41 HOH HOH . 
L 8 HOH A 46 346 94 HOH HOH . 
L 8 HOH A 47 347 71 HOH HOH . 
L 8 HOH A 48 348 20 HOH HOH . 
L 8 HOH A 49 349 8 HOH HOH . 
L 8 HOH A 50 350 13 HOH HOH . 
L 8 HOH A 51 351 26 HOH HOH . 
L 8 HOH A 52 352 27 HOH HOH . 
L 8 HOH A 53 353 78 HOH HOH . 
L 8 HOH A 54 354 77 HOH HOH . 
L 8 HOH A 55 355 84 HOH HOH . 
L 8 HOH A 56 356 65 HOH HOH . 
L 8 HOH A 57 357 111 HOH HOH . 
L 8 HOH A 58 358 91 HOH HOH . 
L 8 HOH A 59 359 119 HOH HOH . 
L 8 HOH A 60 360 107 HOH HOH . 
L 8 HOH A 61 361 73 HOH HOH . 
L 8 HOH A 62 362 104 HOH HOH . 
L 8 HOH A 63 363 106 HOH HOH . 
L 8 HOH A 64 364 88 HOH HOH . 
L 8 HOH A 65 365 44 HOH HOH . 
L 8 HOH A 66 366 96 HOH HOH . 
L 8 HOH A 67 367 62 HOH HOH . 
L 8 HOH A 68 368 51 HOH HOH . 
L 8 HOH A 69 369 70 HOH HOH . 
L 8 HOH A 70 370 81 HOH HOH . 
L 8 HOH A 71 371 100 HOH HOH . 
L 8 HOH A 72 372 105 HOH HOH . 
L 8 HOH A 73 373 53 HOH HOH . 
L 8 HOH A 74 374 72 HOH HOH . 
L 8 HOH A 75 375 59 HOH HOH . 
L 8 HOH A 76 376 112 HOH HOH . 
L 8 HOH A 77 377 25 HOH HOH . 
L 8 HOH A 78 378 28 HOH HOH . 
L 8 HOH A 79 379 90 HOH HOH . 
L 8 HOH A 80 380 118 HOH HOH . 
L 8 HOH A 81 381 86 HOH HOH . 
L 8 HOH A 82 382 74 HOH HOH . 
L 8 HOH A 83 383 109 HOH HOH . 
L 8 HOH A 84 384 46 HOH HOH . 
M 8 HOH B 1 201 122 HOH HOH . 
M 8 HOH B 2 202 80 HOH HOH . 
M 8 HOH B 3 203 9 HOH HOH . 
M 8 HOH B 4 204 64 HOH HOH . 
M 8 HOH B 5 205 6 HOH HOH . 
M 8 HOH B 6 206 39 HOH HOH . 
M 8 HOH B 7 207 120 HOH HOH . 
M 8 HOH B 8 208 17 HOH HOH . 
M 8 HOH B 9 209 82 HOH HOH . 
M 8 HOH B 10 210 93 HOH HOH . 
M 8 HOH B 11 211 75 HOH HOH . 
M 8 HOH B 12 212 48 HOH HOH . 
M 8 HOH B 13 213 117 HOH HOH . 
M 8 HOH B 14 214 36 HOH HOH . 
M 8 HOH B 15 215 52 HOH HOH . 
M 8 HOH B 16 216 35 HOH HOH . 
M 8 HOH B 17 217 10 HOH HOH . 
M 8 HOH B 18 218 113 HOH HOH . 
M 8 HOH B 19 219 114 HOH HOH . 
M 8 HOH B 20 220 108 HOH HOH . 
M 8 HOH B 21 221 115 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . J 3 -5.027 -4.161 -8.109 1 19.42 ? C1 EDO 102 B 1 
HETATM 2 O O1 EDO . . . J 3 -4.506 -4.191 -6.761 1 26.8 ? O1 EDO 102 B 1 
HETATM 3 C C2 EDO . . . J 3 -5.903 -2.95 -8.402 0.7 33.72 ? C2 EDO 102 B 1 
HETATM 4 O O2 EDO . . . J 3 -5.045 -1.812 -8.352 0.53 26.77 ? O2 EDO 102 B 1 
HETATM 5 H H11 EDO . . . J 3 -5.611 -5.067 -8.279 1 23.34 ? H11 EDO 102 B 1 
HETATM 6 H H12 EDO . . . J 3 -4.189 -4.166 -8.809 1 23.34 ? H12 EDO 102 B 1 
HETATM 7 H HO1 EDO . . . J 3 -4.609 -5.08 -6.395 0 32.2 ? HO1 EDO 102 B 1 
HETATM 8 H H21 EDO . . . J 3 -6.701 -2.864 -7.662 0.83 40.5 ? H21 EDO 102 B 1 
HETATM 9 H H22 EDO . . . J 3 -6.367 -3.04 -9.387 0.76 40.5 ? H22 EDO 102 B 1 
HETATM 10 H HO2 EDO . . . J 3 -5.485 -1.058 -8.767 0.7 32.16 ? HO2 EDO 102 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           10 
#