data_8F10 # _model_server_result.job_id 0fcHZ7aFD_qykaOIedxN0A _model_server_result.datetime_utc '2024-11-13 17:00:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f10 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":103}' # _entry.id 8F10 # _exptl.entry_id 8F10 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 69.085 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IMIDAZOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.44 _cell.angle_gamma 90 _cell.entry_id 8F10 _cell.length_a 28.15 _cell.length_b 39.92 _cell.length_c 42.36 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F10 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C DAL 4 B DAL 3 1_555 B N DTR 5 B DTR 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale2 B C DTR 5 B DTR 4 1_555 B N DSG 6 B DSG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale3 B C DSG 6 B DSG 5 1_555 B N DHI 7 B DHI 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 B C DHI 7 B DHI 6 1_555 B N DCY 8 B DCY 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale5 B C DCY 8 B DCY 7 1_555 B N DGL 9 B DGL 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale6 B SG DCY 8 B DCY 7 1_555 I CH WHL . B WHL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.775 ? covale ? covale7 B C DGL 9 B DGL 8 1_555 B N DTY 10 B DTY 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale8 B C DTY 10 B DTY 9 1_555 B N DAL 11 B DAL 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 B C DAL 11 B DAL 10 1_555 B N DAL 12 B DAL 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale10 B C DAL 12 B DAL 11 1_555 B N DPN 13 B DPN 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale11 B C DPN 13 B DPN 12 1_555 B N DVA 14 B DVA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale12 B C DVA 14 B DVA 13 1_555 B N DCY 15 B DCY 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale13 B C DCY 15 B DCY 14 1_555 B N DSN 16 B DSN 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale14 B SG DCY 15 B DCY 14 1_555 I CK WHL . B WHL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.771 ? covale ? covale15 B C DSN 16 B DSN 15 1_555 B N DGL 17 B DGL 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? covale ? covale16 B C DGL 17 B DGL 16 1_555 B N DVA 18 B DVA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale17 B C DVA 18 B DVA 17 1_555 B N NH2 19 B NH2 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? # _chem_comp.formula 'C3 H5 N2 1' _chem_comp.formula_weight 69.085 _chem_comp.id IMD _chem_comp.mon_nstd_flag . _chem_comp.name IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IMD sing 419 n y N1 C5 IMD sing 420 n y N1 HN1 IMD sing 421 n n C2 N3 IMD doub 422 n y C2 H2 IMD sing 423 n n N3 C4 IMD sing 424 n y N3 HN3 IMD sing 425 n n C4 C5 IMD doub 426 n y C4 H4 IMD sing 427 n n C5 H5 IMD sing 428 n n # _atom_sites.entry_id 8F10 _atom_sites.fract_transf_matrix[1][1] 0.035524 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003386 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02505 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023714 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EDO A 1 201 2 EDO EDO . D 3 EDO A 1 202 3 EDO EDO . E 4 CL A 1 203 4 CL CL . F 5 GOL A 1 204 6 GOL GOL . G 5 GOL A 1 205 7 GOL GOL . H 3 EDO A 1 206 8 EDO EDO . I 6 WHL B 1 101 101 WHL WHL . J 3 EDO B 1 102 1 EDO EDO . K 7 IMD B 1 103 5 IMD IMD . L 8 HOH A 1 301 60 HOH HOH . L 8 HOH A 2 302 37 HOH HOH . L 8 HOH A 3 303 31 HOH HOH . L 8 HOH A 4 304 30 HOH HOH . L 8 HOH A 5 305 23 HOH HOH . L 8 HOH A 6 306 29 HOH HOH . L 8 HOH A 7 307 95 HOH HOH . L 8 HOH A 8 308 42 HOH HOH . L 8 HOH A 9 309 40 HOH HOH . L 8 HOH A 10 310 33 HOH HOH . L 8 HOH A 11 311 121 HOH HOH . L 8 HOH A 12 312 43 HOH HOH . L 8 HOH A 13 313 3 HOH HOH . L 8 HOH A 14 314 2 HOH HOH . L 8 HOH A 15 315 22 HOH HOH . L 8 HOH A 16 316 69 HOH HOH . L 8 HOH A 17 317 50 HOH HOH . L 8 HOH A 18 318 19 HOH HOH . L 8 HOH A 19 319 15 HOH HOH . L 8 HOH A 20 320 34 HOH HOH . L 8 HOH A 21 321 38 HOH HOH . L 8 HOH A 22 322 63 HOH HOH . L 8 HOH A 23 323 66 HOH HOH . L 8 HOH A 24 324 7 HOH HOH . L 8 HOH A 25 325 11 HOH HOH . L 8 HOH A 26 326 18 HOH HOH . L 8 HOH A 27 327 58 HOH HOH . L 8 HOH A 28 328 56 HOH HOH . L 8 HOH A 29 329 12 HOH HOH . L 8 HOH A 30 330 21 HOH HOH . L 8 HOH A 31 331 47 HOH HOH . L 8 HOH A 32 332 79 HOH HOH . L 8 HOH A 33 333 57 HOH HOH . L 8 HOH A 34 334 24 HOH HOH . L 8 HOH A 35 335 1 HOH HOH . L 8 HOH A 36 336 89 HOH HOH . L 8 HOH A 37 337 55 HOH HOH . L 8 HOH A 38 338 85 HOH HOH . L 8 HOH A 39 339 32 HOH HOH . L 8 HOH A 40 340 4 HOH HOH . L 8 HOH A 41 341 45 HOH HOH . L 8 HOH A 42 342 68 HOH HOH . L 8 HOH A 43 343 49 HOH HOH . L 8 HOH A 44 344 102 HOH HOH . L 8 HOH A 45 345 41 HOH HOH . L 8 HOH A 46 346 94 HOH HOH . L 8 HOH A 47 347 71 HOH HOH . L 8 HOH A 48 348 20 HOH HOH . L 8 HOH A 49 349 8 HOH HOH . L 8 HOH A 50 350 13 HOH HOH . L 8 HOH A 51 351 26 HOH HOH . L 8 HOH A 52 352 27 HOH HOH . L 8 HOH A 53 353 78 HOH HOH . L 8 HOH A 54 354 77 HOH HOH . L 8 HOH A 55 355 84 HOH HOH . L 8 HOH A 56 356 65 HOH HOH . L 8 HOH A 57 357 111 HOH HOH . L 8 HOH A 58 358 91 HOH HOH . L 8 HOH A 59 359 119 HOH HOH . L 8 HOH A 60 360 107 HOH HOH . L 8 HOH A 61 361 73 HOH HOH . L 8 HOH A 62 362 104 HOH HOH . L 8 HOH A 63 363 106 HOH HOH . L 8 HOH A 64 364 88 HOH HOH . L 8 HOH A 65 365 44 HOH HOH . L 8 HOH A 66 366 96 HOH HOH . L 8 HOH A 67 367 62 HOH HOH . L 8 HOH A 68 368 51 HOH HOH . L 8 HOH A 69 369 70 HOH HOH . L 8 HOH A 70 370 81 HOH HOH . L 8 HOH A 71 371 100 HOH HOH . L 8 HOH A 72 372 105 HOH HOH . L 8 HOH A 73 373 53 HOH HOH . L 8 HOH A 74 374 72 HOH HOH . L 8 HOH A 75 375 59 HOH HOH . L 8 HOH A 76 376 112 HOH HOH . L 8 HOH A 77 377 25 HOH HOH . L 8 HOH A 78 378 28 HOH HOH . L 8 HOH A 79 379 90 HOH HOH . L 8 HOH A 80 380 118 HOH HOH . L 8 HOH A 81 381 86 HOH HOH . L 8 HOH A 82 382 74 HOH HOH . L 8 HOH A 83 383 109 HOH HOH . L 8 HOH A 84 384 46 HOH HOH . M 8 HOH B 1 201 122 HOH HOH . M 8 HOH B 2 202 80 HOH HOH . M 8 HOH B 3 203 9 HOH HOH . M 8 HOH B 4 204 64 HOH HOH . M 8 HOH B 5 205 6 HOH HOH . M 8 HOH B 6 206 39 HOH HOH . M 8 HOH B 7 207 120 HOH HOH . M 8 HOH B 8 208 17 HOH HOH . M 8 HOH B 9 209 82 HOH HOH . M 8 HOH B 10 210 93 HOH HOH . M 8 HOH B 11 211 75 HOH HOH . M 8 HOH B 12 212 48 HOH HOH . M 8 HOH B 13 213 117 HOH HOH . M 8 HOH B 14 214 36 HOH HOH . M 8 HOH B 15 215 52 HOH HOH . M 8 HOH B 16 216 35 HOH HOH . M 8 HOH B 17 217 10 HOH HOH . M 8 HOH B 18 218 113 HOH HOH . M 8 HOH B 19 219 114 HOH HOH . M 8 HOH B 20 220 108 HOH HOH . M 8 HOH B 21 221 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IMD . . . K 7 -6.071 -0.737 -4.257 1 30.34 ? N1 IMD 103 B 1 HETATM 2 C C2 IMD . . . K 7 -6.225 -0.914 -2.92 1 41.32 ? C2 IMD 103 B 1 HETATM 3 N N3 IMD . . . K 7 -7.375 -0.313 -2.521 1 36.53 ? N3 IMD 103 B 1 HETATM 4 C C4 IMD . . . K 7 -7.959 0.232 -3.613 1 36.19 ? C4 IMD 103 B 1 HETATM 5 C C5 IMD . . . K 7 -7.138 -0.036 -4.706 1 31.95 ? C5 IMD 103 B 1 HETATM 6 H HN1 IMD . . . K 7 -5.321 -1.058 -4.8 1 36.45 ? HN1 IMD 103 B 1 HETATM 7 H H2 IMD . . . K 7 -5.605 -1.399 -2.336 1 49.62 ? H2 IMD 103 B 1 HETATM 8 H HN3 IMD . . . K 7 -7.721 -0.28 -1.605 1 43.87 ? HN3 IMD 103 B 1 HETATM 9 H H4 IMD . . . K 7 -8.805 0.726 -3.631 1 43.46 ? H4 IMD 103 B 1 HETATM 10 H H5 IMD . . . K 7 -7.304 0.234 -5.634 1 38.38 ? H5 IMD 103 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #