data_8F12 # _model_server_result.job_id Z4fzIU-vZ4953Ffo3B1M1A _model_server_result.datetime_utc '2024-10-10 09:32:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f12 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":101}' # _entry.id 8F12 # _exptl.entry_id 8F12 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.214 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N,N'-(1,4-phenylene)diacetamide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8F12 _cell.length_a 60.31 _cell.length_b 60.31 _cell.length_c 84.59 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F12 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C DPR 3 B DPR 2 1_555 B N DAL 4 B DAL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale2 B C DAL 4 B DAL 3 1_555 B N DTR 5 B DTR 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale3 B C DTR 5 B DTR 4 1_555 B N DTY 6 B DTY 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 B C DTY 6 B DTY 5 1_555 B N DGL 7 B DGL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale5 B C DGL 7 B DGL 6 1_555 B N DCY 8 B DCY 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale6 B C DCY 8 B DCY 7 1_555 B N DNE 9 B DNE 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale7 B SG DCY 8 B DCY 7 1_555 F CH WHL . B WHL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? covale ? covale8 B C DNE 9 B DNE 8 1_555 B N DGL 10 B DGL 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale9 B C DGL 10 B DGL 9 1_555 B N DAL 11 B DAL 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale10 B C DAL 11 B DAL 10 1_555 B N DAL 12 B DAL 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale11 B C DAL 12 B DAL 11 1_555 B N DNE 13 B DNE 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale12 B C DNE 13 B DNE 12 1_555 B N DNE 14 B DNE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale13 B C DNE 14 B DNE 13 1_555 B N DCY 15 B DCY 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale14 B C DCY 15 B DCY 14 1_555 B N DGN 16 B DGN 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale15 B SG DCY 15 B DCY 14 1_555 F CK WHL . B WHL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.708 ? covale ? covale16 B C DGN 16 B DGN 15 1_555 B N DGN 17 B DGN 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale17 B C DGN 17 B DGN 16 1_555 B N DVA 18 B DVA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C10 H12 N2 O2' _chem_comp.formula_weight 192.214 _chem_comp.id WHL _chem_comp.mon_nstd_flag . _chem_comp.name "N,N'-(1,4-phenylene)diacetamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CK CJ WHL sing 545 n n CJ NB WHL sing 546 n n CJ OA WHL doub 547 n n NB CC WHL sing 548 n n CC CB WHL doub 549 n y CC CD WHL sing 550 n y CB CA WHL sing 551 n y CD CE WHL doub 552 n y CA CF WHL doub 553 n y CE CF WHL sing 554 n y CF NA WHL sing 555 n n OB CG WHL doub 556 n n NA CG WHL sing 557 n n CG CH WHL sing 558 n n CA H1 WHL sing 559 n n CB H2 WHL sing 560 n n NB H3 WHL sing 561 n n CD H4 WHL sing 562 n n CE H5 WHL sing 563 n n CH H6 WHL sing 564 n n CH H7 WHL sing 565 n n CH H8 WHL sing 566 n n CK H9 WHL sing 567 n n CK H10 WHL sing 568 n n CK H11 WHL sing 569 n n NA H12 WHL sing 570 n n # _atom_sites.entry_id 8F12 _atom_sites.fract_transf_matrix[1][1] 0.016581 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016581 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011822 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 A 1 201 1 SO4 SO4 . D 3 SO4 A 1 202 2 SO4 SO4 . E 4 CL A 1 203 1 CL CL . F 5 WHL B 1 101 101 WHL WHL . G 6 HOH A 1 301 78 HOH HOH . G 6 HOH A 2 302 20 HOH HOH . G 6 HOH A 3 303 81 HOH HOH . G 6 HOH A 4 304 50 HOH HOH . G 6 HOH A 5 305 39 HOH HOH . G 6 HOH A 6 306 55 HOH HOH . G 6 HOH A 7 307 52 HOH HOH . G 6 HOH A 8 308 8 HOH HOH . G 6 HOH A 9 309 12 HOH HOH . G 6 HOH A 10 310 58 HOH HOH . G 6 HOH A 11 311 41 HOH HOH . G 6 HOH A 12 312 24 HOH HOH . G 6 HOH A 13 313 14 HOH HOH . G 6 HOH A 14 314 67 HOH HOH . G 6 HOH A 15 315 64 HOH HOH . G 6 HOH A 16 316 77 HOH HOH . G 6 HOH A 17 317 107 HOH HOH . G 6 HOH A 18 318 4 HOH HOH . G 6 HOH A 19 319 28 HOH HOH . G 6 HOH A 20 320 19 HOH HOH . G 6 HOH A 21 321 1 HOH HOH . G 6 HOH A 22 322 13 HOH HOH . G 6 HOH A 23 323 17 HOH HOH . G 6 HOH A 24 324 32 HOH HOH . G 6 HOH A 25 325 35 HOH HOH . G 6 HOH A 26 326 88 HOH HOH . G 6 HOH A 27 327 34 HOH HOH . G 6 HOH A 28 328 6 HOH HOH . G 6 HOH A 29 329 30 HOH HOH . G 6 HOH A 30 330 33 HOH HOH . G 6 HOH A 31 331 7 HOH HOH . G 6 HOH A 32 332 18 HOH HOH . G 6 HOH A 33 333 10 HOH HOH . G 6 HOH A 34 334 21 HOH HOH . G 6 HOH A 35 335 47 HOH HOH . G 6 HOH A 36 336 25 HOH HOH . G 6 HOH A 37 337 92 HOH HOH . G 6 HOH A 38 338 116 HOH HOH . G 6 HOH A 39 339 22 HOH HOH . G 6 HOH A 40 340 23 HOH HOH . G 6 HOH A 41 341 9 HOH HOH . G 6 HOH A 42 342 3 HOH HOH . G 6 HOH A 43 343 61 HOH HOH . G 6 HOH A 44 344 53 HOH HOH . G 6 HOH A 45 345 49 HOH HOH . G 6 HOH A 46 346 114 HOH HOH . G 6 HOH A 47 347 74 HOH HOH . G 6 HOH A 48 348 42 HOH HOH . G 6 HOH A 49 349 44 HOH HOH . G 6 HOH A 50 350 94 HOH HOH . G 6 HOH A 51 351 93 HOH HOH . G 6 HOH A 52 352 70 HOH HOH . G 6 HOH A 53 353 115 HOH HOH . G 6 HOH A 54 354 66 HOH HOH . G 6 HOH A 55 355 112 HOH HOH . G 6 HOH A 56 356 89 HOH HOH . G 6 HOH A 57 357 26 HOH HOH . G 6 HOH A 58 358 69 HOH HOH . G 6 HOH A 59 359 86 HOH HOH . G 6 HOH A 60 360 97 HOH HOH . G 6 HOH A 61 361 37 HOH HOH . G 6 HOH A 62 362 113 HOH HOH . G 6 HOH A 63 363 72 HOH HOH . G 6 HOH A 64 364 95 HOH HOH . H 6 HOH B 1 201 100 HOH HOH . H 6 HOH B 2 202 31 HOH HOH . H 6 HOH B 3 203 48 HOH HOH . H 6 HOH B 4 204 43 HOH HOH . H 6 HOH B 5 205 76 HOH HOH . H 6 HOH B 6 206 15 HOH HOH . H 6 HOH B 7 207 36 HOH HOH . H 6 HOH B 8 208 87 HOH HOH . H 6 HOH B 9 209 59 HOH HOH . H 6 HOH B 10 210 101 HOH HOH . H 6 HOH B 11 211 83 HOH HOH . H 6 HOH B 12 212 85 HOH HOH . H 6 HOH B 13 213 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA WHL . . . F 5 15.622 7.194 -2.754 1 36.34 ? CA WHL 101 B 1 HETATM 2 C CB WHL . . . F 5 14.889 8.231 -3.34 1 35.17 ? CB WHL 101 B 1 HETATM 3 N NB WHL . . . F 5 14.822 10.102 -4.94 1 34.85 ? NB WHL 101 B 1 HETATM 4 O OB WHL . . . F 5 19.724 6.897 -2.412 1 34.54 ? OB WHL 101 B 1 HETATM 5 C CG WHL . . . F 5 19.06 5.925 -2.241 1 31.8 ? CG WHL 101 B 1 HETATM 6 C CD WHL . . . F 5 16.818 8.821 -4.683 1 31.44 ? CD WHL 101 B 1 HETATM 7 C CE WHL . . . F 5 17.545 7.787 -4.112 1 27.39 ? CE WHL 101 B 1 HETATM 8 C CH WHL . . . F 5 19.552 4.604 -1.626 1 43.07 ? CH WHL 101 B 1 HETATM 9 C CC WHL . . . F 5 15.499 9.003 -4.309 1 37.09 ? CC WHL 101 B 1 HETATM 10 C CF WHL . . . F 5 16.939 6.998 -3.145 1 33.6 ? CF WHL 101 B 1 HETATM 11 C CJ WHL . . . F 5 13.422 10.417 -4.842 1 49.73 ? CJ WHL 101 B 1 HETATM 12 C CK WHL . . . F 5 12.955 11.667 -5.59 1 36.17 ? CK WHL 101 B 1 HETATM 13 N NA WHL . . . F 5 17.677 5.914 -2.553 1 30.27 ? NA WHL 101 B 1 HETATM 14 O OA WHL . . . F 5 12.668 9.757 -4.214 1 51.5 ? OA WHL 101 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #