data_8F13
#
_model_server_result.job_id            4hJLoGgcoDRI8cnuLYtBYw 
_model_server_result.datetime_utc      '2024-12-01 20:55:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8f13 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":103}' 
#
_entry.id    8F13 
#
_exptl.entry_id    8F13 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8F13 
_cell.length_a            60.286 
_cell.length_b            60.286 
_cell.length_c            84.897 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8F13 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 J N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C DAS 2 B DAS 1 1_555 B N DPR 3 B DPR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? 
covale ? covale2 B C DPR 3 B DPR 2 1_555 B N DAL 4 B DAL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 B C DAL 4 B DAL 3 1_555 B N DTR 5 B DTR 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale4 B C DTR 5 B DTR 4 1_555 B N DTY 6 B DTY 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale5 B C DTY 6 B DTY 5 1_555 B N DGL 7 B DGL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale6 B C DGL 7 B DGL 6 1_555 B N DCY 8 B DCY 7 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.332 ? 
covale ? covale7 B C DGL 7 B DGL 6 1_555 B N DCY 8 B DCY 7 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.322 ? 
covale ? covale8 B C DCY 8 B DCY 7 1_555 B N DNE 9 B DNE 8 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale9 B C DCY 8 B DCY 7 1_555 B N DNE 9 B DNE 8 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale10 B C DNE 9 B DNE 8 1_555 B N DGL 10 B DGL 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale11 B C DGL 10 B DGL 9 1_555 B N DAL 11 B DAL 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale12 B C DAL 11 B DAL 10 1_555 B N DAL 12 B DAL 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale13 B C DAL 12 B DAL 11 1_555 B N DNE 13 B DNE 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale14 B C DNE 13 B DNE 12 1_555 B N DNE 14 B DNE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale15 B C DNE 14 B DNE 13 1_555 B N DCY 15 B DCY 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale16 B C DCY 15 B DCY 14 1_555 B N DGN 16 B DGN 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale17 B C DGN 16 B DGN 15 1_555 B N DGN 17 B DGN 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale18 B C DGN 17 B DGN 16 1_555 B N DVA 18 B DVA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 283 n n 
C1 C2 EDO sing 284 n n 
C1 H11 EDO sing 285 n n 
C1 H12 EDO sing 286 n n 
O1 HO1 EDO sing 287 n n 
C2 O2 EDO sing 288 n n 
C2 H21 EDO sing 289 n n 
C2 H22 EDO sing 290 n n 
O2 HO2 EDO sing 291 n n 
#
_atom_sites.entry_id                     8F13 
_atom_sites.fract_transf_matrix[1][1]    0.016588 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016588 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011779 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 EDO A 1 201 2 EDO EDO . 
D 3 EDO A 1 202 5 EDO EDO . 
E 3 EDO A 1 203 6 EDO EDO . 
F 3 EDO A 1 204 7 EDO EDO . 
G 4 SO4 A 1 205 1 SO4 SO4 . 
H 5 DMS A 1 206 1 DMS DMS . 
I 6 WHL B 1 101 101 WHL WHL . 
J 3 EDO B 1 102 3 EDO EDO . 
K 3 EDO B 1 103 8 EDO EDO . 
L 7 HOH A 1 301 123 HOH HOH . 
L 7 HOH A 2 302 124 HOH HOH . 
L 7 HOH A 3 303 122 HOH HOH . 
L 7 HOH A 4 304 8 HOH HOH . 
L 7 HOH A 5 305 28 HOH HOH . 
L 7 HOH A 6 306 49 HOH HOH . 
L 7 HOH A 7 307 97 HOH HOH . 
L 7 HOH A 8 308 64 HOH HOH . 
L 7 HOH A 9 309 50 HOH HOH . 
L 7 HOH A 10 310 63 HOH HOH . 
L 7 HOH A 11 311 1 HOH HOH . 
L 7 HOH A 12 312 51 HOH HOH . 
L 7 HOH A 13 313 106 HOH HOH . 
L 7 HOH A 14 314 153 HOH HOH . 
L 7 HOH A 15 315 6 HOH HOH . 
L 7 HOH A 16 316 48 HOH HOH . 
L 7 HOH A 17 317 147 HOH HOH . 
L 7 HOH A 18 318 39 HOH HOH . 
L 7 HOH A 19 319 136 HOH HOH . 
L 7 HOH A 20 320 72 HOH HOH . 
L 7 HOH A 21 321 52 HOH HOH . 
L 7 HOH A 22 322 89 HOH HOH . 
L 7 HOH A 23 323 10 HOH HOH . 
L 7 HOH A 24 324 54 HOH HOH . 
L 7 HOH A 25 325 47 HOH HOH . 
L 7 HOH A 26 326 74 HOH HOH . 
L 7 HOH A 27 327 88 HOH HOH . 
L 7 HOH A 28 328 140 HOH HOH . 
L 7 HOH A 29 329 20 HOH HOH . 
L 7 HOH A 30 330 70 HOH HOH . 
L 7 HOH A 31 331 7 HOH HOH . 
L 7 HOH A 32 332 23 HOH HOH . 
L 7 HOH A 33 333 29 HOH HOH . 
L 7 HOH A 34 334 87 HOH HOH . 
L 7 HOH A 35 335 34 HOH HOH . 
L 7 HOH A 36 336 73 HOH HOH . 
L 7 HOH A 37 337 15 HOH HOH . 
L 7 HOH A 38 338 38 HOH HOH . 
L 7 HOH A 39 339 84 HOH HOH . 
L 7 HOH A 40 340 17 HOH HOH . 
L 7 HOH A 41 341 25 HOH HOH . 
L 7 HOH A 42 342 5 HOH HOH . 
L 7 HOH A 43 343 21 HOH HOH . 
L 7 HOH A 44 344 57 HOH HOH . 
L 7 HOH A 45 345 26 HOH HOH . 
L 7 HOH A 46 346 11 HOH HOH . 
L 7 HOH A 47 347 59 HOH HOH . 
L 7 HOH A 48 348 22 HOH HOH . 
L 7 HOH A 49 349 53 HOH HOH . 
L 7 HOH A 50 350 100 HOH HOH . 
L 7 HOH A 51 351 12 HOH HOH . 
L 7 HOH A 52 352 46 HOH HOH . 
L 7 HOH A 53 353 45 HOH HOH . 
L 7 HOH A 54 354 41 HOH HOH . 
L 7 HOH A 55 355 27 HOH HOH . 
L 7 HOH A 56 356 107 HOH HOH . 
L 7 HOH A 57 357 4 HOH HOH . 
L 7 HOH A 58 358 18 HOH HOH . 
L 7 HOH A 59 359 111 HOH HOH . 
L 7 HOH A 60 360 32 HOH HOH . 
L 7 HOH A 61 361 112 HOH HOH . 
L 7 HOH A 62 362 128 HOH HOH . 
L 7 HOH A 63 363 24 HOH HOH . 
L 7 HOH A 64 364 42 HOH HOH . 
L 7 HOH A 65 365 30 HOH HOH . 
L 7 HOH A 66 366 69 HOH HOH . 
L 7 HOH A 67 367 44 HOH HOH . 
L 7 HOH A 68 368 2 HOH HOH . 
L 7 HOH A 69 369 150 HOH HOH . 
L 7 HOH A 70 370 3 HOH HOH . 
L 7 HOH A 71 371 109 HOH HOH . 
L 7 HOH A 72 372 83 HOH HOH . 
L 7 HOH A 73 373 67 HOH HOH . 
L 7 HOH A 74 374 9 HOH HOH . 
L 7 HOH A 75 375 134 HOH HOH . 
L 7 HOH A 76 376 132 HOH HOH . 
L 7 HOH A 77 377 31 HOH HOH . 
L 7 HOH A 78 378 56 HOH HOH . 
L 7 HOH A 79 379 55 HOH HOH . 
L 7 HOH A 80 380 36 HOH HOH . 
L 7 HOH A 81 381 33 HOH HOH . 
L 7 HOH A 82 382 77 HOH HOH . 
L 7 HOH A 83 383 86 HOH HOH . 
L 7 HOH A 84 384 99 HOH HOH . 
L 7 HOH A 85 385 120 HOH HOH . 
L 7 HOH A 86 386 71 HOH HOH . 
L 7 HOH A 87 387 116 HOH HOH . 
L 7 HOH A 88 388 149 HOH HOH . 
L 7 HOH A 89 389 146 HOH HOH . 
L 7 HOH A 90 390 75 HOH HOH . 
L 7 HOH A 91 391 131 HOH HOH . 
L 7 HOH A 92 392 58 HOH HOH . 
L 7 HOH A 93 393 40 HOH HOH . 
L 7 HOH A 94 394 113 HOH HOH . 
L 7 HOH A 95 395 127 HOH HOH . 
L 7 HOH A 96 396 103 HOH HOH . 
L 7 HOH A 97 397 143 HOH HOH . 
L 7 HOH A 98 398 62 HOH HOH . 
L 7 HOH A 99 399 141 HOH HOH . 
L 7 HOH A 100 400 90 HOH HOH . 
L 7 HOH A 101 401 114 HOH HOH . 
L 7 HOH A 102 402 144 HOH HOH . 
L 7 HOH A 103 403 94 HOH HOH . 
L 7 HOH A 104 404 82 HOH HOH . 
L 7 HOH A 105 405 152 HOH HOH . 
L 7 HOH A 106 406 66 HOH HOH . 
L 7 HOH A 107 407 101 HOH HOH . 
L 7 HOH A 108 408 129 HOH HOH . 
L 7 HOH A 109 409 142 HOH HOH . 
L 7 HOH A 110 410 151 HOH HOH . 
L 7 HOH A 111 411 139 HOH HOH . 
L 7 HOH A 112 412 105 HOH HOH . 
L 7 HOH A 113 413 110 HOH HOH . 
L 7 HOH A 114 414 102 HOH HOH . 
L 7 HOH A 115 415 37 HOH HOH . 
L 7 HOH A 116 416 104 HOH HOH . 
L 7 HOH A 117 417 145 HOH HOH . 
L 7 HOH A 118 418 43 HOH HOH . 
L 7 HOH A 119 419 117 HOH HOH . 
L 7 HOH A 120 420 80 HOH HOH . 
L 7 HOH A 121 421 115 HOH HOH . 
L 7 HOH A 122 422 98 HOH HOH . 
L 7 HOH A 123 423 96 HOH HOH . 
L 7 HOH A 124 424 91 HOH HOH . 
L 7 HOH A 125 425 118 HOH HOH . 
L 7 HOH A 126 426 119 HOH HOH . 
L 7 HOH A 127 427 121 HOH HOH . 
M 7 HOH B 1 201 148 HOH HOH . 
M 7 HOH B 2 202 65 HOH HOH . 
M 7 HOH B 3 203 19 HOH HOH . 
M 7 HOH B 4 204 78 HOH HOH . 
M 7 HOH B 5 205 79 HOH HOH . 
M 7 HOH B 6 206 14 HOH HOH . 
M 7 HOH B 7 207 85 HOH HOH . 
M 7 HOH B 8 208 35 HOH HOH . 
M 7 HOH B 9 209 76 HOH HOH . 
M 7 HOH B 10 210 16 HOH HOH . 
M 7 HOH B 11 211 125 HOH HOH . 
M 7 HOH B 12 212 137 HOH HOH . 
M 7 HOH B 13 213 93 HOH HOH . 
M 7 HOH B 14 214 108 HOH HOH . 
M 7 HOH B 15 215 135 HOH HOH . 
M 7 HOH B 16 216 13 HOH HOH . 
M 7 HOH B 17 217 92 HOH HOH . 
M 7 HOH B 18 218 60 HOH HOH . 
M 7 HOH B 19 219 81 HOH HOH . 
M 7 HOH B 20 220 68 HOH HOH . 
M 7 HOH B 21 221 138 HOH HOH . 
M 7 HOH B 22 222 61 HOH HOH . 
M 7 HOH B 23 223 95 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . K 3 8.156 11.169 -10.606 1 35.45 ? C1 EDO 103 B 1 
HETATM 2 O O1 EDO . . . K 3 7.508 11.997 -9.642 1 30.17 ? O1 EDO 103 B 1 
HETATM 3 C C2 EDO . . . K 3 8.811 12.052 -11.645 1 35.23 ? C2 EDO 103 B 1 
HETATM 4 O O2 EDO . . . K 3 8.091 12.024 -12.887 1 38.45 ? O2 EDO 103 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#