data_8F13 # _model_server_result.job_id lAGIAG4mFKmgxlSfbo6qkQ _model_server_result.datetime_utc '2024-11-29 17:41:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f13 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":206}' # _entry.id 8F13 # _exptl.entry_id 8F13 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8F13 _cell.length_a 60.286 _cell.length_b 60.286 _cell.length_c 84.897 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F13 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C DAS 2 B DAS 1 1_555 B N DPR 3 B DPR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale2 B C DPR 3 B DPR 2 1_555 B N DAL 4 B DAL 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 B C DAL 4 B DAL 3 1_555 B N DTR 5 B DTR 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 B C DTR 5 B DTR 4 1_555 B N DTY 6 B DTY 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale5 B C DTY 6 B DTY 5 1_555 B N DGL 7 B DGL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale6 B C DGL 7 B DGL 6 1_555 B N DCY 8 B DCY 7 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.332 ? covale ? covale7 B C DGL 7 B DGL 6 1_555 B N DCY 8 B DCY 7 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.322 ? covale ? covale8 B C DCY 8 B DCY 7 1_555 B N DNE 9 B DNE 8 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale9 B C DCY 8 B DCY 7 1_555 B N DNE 9 B DNE 8 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 B C DNE 9 B DNE 8 1_555 B N DGL 10 B DGL 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 B C DGL 10 B DGL 9 1_555 B N DAL 11 B DAL 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale12 B C DAL 11 B DAL 10 1_555 B N DAL 12 B DAL 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale13 B C DAL 12 B DAL 11 1_555 B N DNE 13 B DNE 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale14 B C DNE 13 B DNE 12 1_555 B N DNE 14 B DNE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale15 B C DNE 14 B DNE 13 1_555 B N DCY 15 B DCY 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale16 B C DCY 15 B DCY 14 1_555 B N DGN 16 B DGN 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale17 B C DGN 16 B DGN 15 1_555 B N DGN 17 B DGN 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale18 B C DGN 17 B DGN 16 1_555 B N DVA 18 B DVA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 166 n n S C1 DMS sing 167 n n S C2 DMS sing 168 n n C1 H11 DMS sing 169 n n C1 H12 DMS sing 170 n n C1 H13 DMS sing 171 n n C2 H21 DMS sing 172 n n C2 H22 DMS sing 173 n n C2 H23 DMS sing 174 n n # _atom_sites.entry_id 8F13 _atom_sites.fract_transf_matrix[1][1] 0.016588 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016588 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011779 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EDO A 1 201 2 EDO EDO . D 3 EDO A 1 202 5 EDO EDO . E 3 EDO A 1 203 6 EDO EDO . F 3 EDO A 1 204 7 EDO EDO . G 4 SO4 A 1 205 1 SO4 SO4 . H 5 DMS A 1 206 1 DMS DMS . I 6 WHL B 1 101 101 WHL WHL . J 3 EDO B 1 102 3 EDO EDO . K 3 EDO B 1 103 8 EDO EDO . L 7 HOH A 1 301 123 HOH HOH . L 7 HOH A 2 302 124 HOH HOH . L 7 HOH A 3 303 122 HOH HOH . L 7 HOH A 4 304 8 HOH HOH . L 7 HOH A 5 305 28 HOH HOH . L 7 HOH A 6 306 49 HOH HOH . L 7 HOH A 7 307 97 HOH HOH . L 7 HOH A 8 308 64 HOH HOH . L 7 HOH A 9 309 50 HOH HOH . L 7 HOH A 10 310 63 HOH HOH . L 7 HOH A 11 311 1 HOH HOH . L 7 HOH A 12 312 51 HOH HOH . L 7 HOH A 13 313 106 HOH HOH . L 7 HOH A 14 314 153 HOH HOH . L 7 HOH A 15 315 6 HOH HOH . L 7 HOH A 16 316 48 HOH HOH . L 7 HOH A 17 317 147 HOH HOH . L 7 HOH A 18 318 39 HOH HOH . L 7 HOH A 19 319 136 HOH HOH . L 7 HOH A 20 320 72 HOH HOH . L 7 HOH A 21 321 52 HOH HOH . L 7 HOH A 22 322 89 HOH HOH . L 7 HOH A 23 323 10 HOH HOH . L 7 HOH A 24 324 54 HOH HOH . L 7 HOH A 25 325 47 HOH HOH . L 7 HOH A 26 326 74 HOH HOH . L 7 HOH A 27 327 88 HOH HOH . L 7 HOH A 28 328 140 HOH HOH . L 7 HOH A 29 329 20 HOH HOH . L 7 HOH A 30 330 70 HOH HOH . L 7 HOH A 31 331 7 HOH HOH . L 7 HOH A 32 332 23 HOH HOH . L 7 HOH A 33 333 29 HOH HOH . L 7 HOH A 34 334 87 HOH HOH . L 7 HOH A 35 335 34 HOH HOH . L 7 HOH A 36 336 73 HOH HOH . L 7 HOH A 37 337 15 HOH HOH . L 7 HOH A 38 338 38 HOH HOH . L 7 HOH A 39 339 84 HOH HOH . L 7 HOH A 40 340 17 HOH HOH . L 7 HOH A 41 341 25 HOH HOH . L 7 HOH A 42 342 5 HOH HOH . L 7 HOH A 43 343 21 HOH HOH . L 7 HOH A 44 344 57 HOH HOH . L 7 HOH A 45 345 26 HOH HOH . L 7 HOH A 46 346 11 HOH HOH . L 7 HOH A 47 347 59 HOH HOH . L 7 HOH A 48 348 22 HOH HOH . L 7 HOH A 49 349 53 HOH HOH . L 7 HOH A 50 350 100 HOH HOH . L 7 HOH A 51 351 12 HOH HOH . L 7 HOH A 52 352 46 HOH HOH . L 7 HOH A 53 353 45 HOH HOH . L 7 HOH A 54 354 41 HOH HOH . L 7 HOH A 55 355 27 HOH HOH . L 7 HOH A 56 356 107 HOH HOH . L 7 HOH A 57 357 4 HOH HOH . L 7 HOH A 58 358 18 HOH HOH . L 7 HOH A 59 359 111 HOH HOH . L 7 HOH A 60 360 32 HOH HOH . L 7 HOH A 61 361 112 HOH HOH . L 7 HOH A 62 362 128 HOH HOH . L 7 HOH A 63 363 24 HOH HOH . L 7 HOH A 64 364 42 HOH HOH . L 7 HOH A 65 365 30 HOH HOH . L 7 HOH A 66 366 69 HOH HOH . L 7 HOH A 67 367 44 HOH HOH . L 7 HOH A 68 368 2 HOH HOH . L 7 HOH A 69 369 150 HOH HOH . L 7 HOH A 70 370 3 HOH HOH . L 7 HOH A 71 371 109 HOH HOH . L 7 HOH A 72 372 83 HOH HOH . L 7 HOH A 73 373 67 HOH HOH . L 7 HOH A 74 374 9 HOH HOH . L 7 HOH A 75 375 134 HOH HOH . L 7 HOH A 76 376 132 HOH HOH . L 7 HOH A 77 377 31 HOH HOH . L 7 HOH A 78 378 56 HOH HOH . L 7 HOH A 79 379 55 HOH HOH . L 7 HOH A 80 380 36 HOH HOH . L 7 HOH A 81 381 33 HOH HOH . L 7 HOH A 82 382 77 HOH HOH . L 7 HOH A 83 383 86 HOH HOH . L 7 HOH A 84 384 99 HOH HOH . L 7 HOH A 85 385 120 HOH HOH . L 7 HOH A 86 386 71 HOH HOH . L 7 HOH A 87 387 116 HOH HOH . L 7 HOH A 88 388 149 HOH HOH . L 7 HOH A 89 389 146 HOH HOH . L 7 HOH A 90 390 75 HOH HOH . L 7 HOH A 91 391 131 HOH HOH . L 7 HOH A 92 392 58 HOH HOH . L 7 HOH A 93 393 40 HOH HOH . L 7 HOH A 94 394 113 HOH HOH . L 7 HOH A 95 395 127 HOH HOH . L 7 HOH A 96 396 103 HOH HOH . L 7 HOH A 97 397 143 HOH HOH . L 7 HOH A 98 398 62 HOH HOH . L 7 HOH A 99 399 141 HOH HOH . L 7 HOH A 100 400 90 HOH HOH . L 7 HOH A 101 401 114 HOH HOH . L 7 HOH A 102 402 144 HOH HOH . L 7 HOH A 103 403 94 HOH HOH . L 7 HOH A 104 404 82 HOH HOH . L 7 HOH A 105 405 152 HOH HOH . L 7 HOH A 106 406 66 HOH HOH . L 7 HOH A 107 407 101 HOH HOH . L 7 HOH A 108 408 129 HOH HOH . L 7 HOH A 109 409 142 HOH HOH . L 7 HOH A 110 410 151 HOH HOH . L 7 HOH A 111 411 139 HOH HOH . L 7 HOH A 112 412 105 HOH HOH . L 7 HOH A 113 413 110 HOH HOH . L 7 HOH A 114 414 102 HOH HOH . L 7 HOH A 115 415 37 HOH HOH . L 7 HOH A 116 416 104 HOH HOH . L 7 HOH A 117 417 145 HOH HOH . L 7 HOH A 118 418 43 HOH HOH . L 7 HOH A 119 419 117 HOH HOH . L 7 HOH A 120 420 80 HOH HOH . L 7 HOH A 121 421 115 HOH HOH . L 7 HOH A 122 422 98 HOH HOH . L 7 HOH A 123 423 96 HOH HOH . L 7 HOH A 124 424 91 HOH HOH . L 7 HOH A 125 425 118 HOH HOH . L 7 HOH A 126 426 119 HOH HOH . L 7 HOH A 127 427 121 HOH HOH . M 7 HOH B 1 201 148 HOH HOH . M 7 HOH B 2 202 65 HOH HOH . M 7 HOH B 3 203 19 HOH HOH . M 7 HOH B 4 204 78 HOH HOH . M 7 HOH B 5 205 79 HOH HOH . M 7 HOH B 6 206 14 HOH HOH . M 7 HOH B 7 207 85 HOH HOH . M 7 HOH B 8 208 35 HOH HOH . M 7 HOH B 9 209 76 HOH HOH . M 7 HOH B 10 210 16 HOH HOH . M 7 HOH B 11 211 125 HOH HOH . M 7 HOH B 12 212 137 HOH HOH . M 7 HOH B 13 213 93 HOH HOH . M 7 HOH B 14 214 108 HOH HOH . M 7 HOH B 15 215 135 HOH HOH . M 7 HOH B 16 216 13 HOH HOH . M 7 HOH B 17 217 92 HOH HOH . M 7 HOH B 18 218 60 HOH HOH . M 7 HOH B 19 219 81 HOH HOH . M 7 HOH B 20 220 68 HOH HOH . M 7 HOH B 21 221 138 HOH HOH . M 7 HOH B 22 222 61 HOH HOH . M 7 HOH B 23 223 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . H 5 11.706 -8.985 -23.866 0.46 36.92 ? S DMS 206 A 1 HETATM 2 O O DMS . . . H 5 12.129 -8.272 -25.11 0.46 37.09 ? O DMS 206 A 1 HETATM 3 C C1 DMS . . . H 5 11.682 -7.826 -22.474 0.46 36.81 ? C1 DMS 206 A 1 HETATM 4 C C2 DMS . . . H 5 9.94 -9.346 -23.922 0.46 34.89 ? C2 DMS 206 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #