data_8F14 # _model_server_result.job_id bbfUbf355SuEkyK7wHlGAQ _model_server_result.datetime_utc '2024-11-07 08:43:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f14 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":101}' # _entry.id 8F14 # _exptl.entry_id 8F14 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.214 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N,N'-(1,4-phenylene)diacetamide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8F14 _cell.length_a 46.158 _cell.length_b 90.115 _cell.length_c 92.333 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F14 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C DPR 2 B DPR 2 1_555 B N DTR 3 B DTR 3 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.332 ? covale ? covale2 B C DPR 2 B DPR 2 1_555 B N DTR 3 B DTR 3 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.334 ? covale ? covale3 B C DTR 3 B DTR 3 1_555 B N DGL 4 B DGL 4 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 B C DTR 3 B DTR 3 1_555 B N DGL 4 B DGL 4 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale5 B C DGL 4 B DGL 4 1_555 B N DAS 5 B DAS 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale6 B C DAS 5 B DAS 5 1_555 B N DCY 6 B DCY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale7 B C DCY 6 B DCY 6 1_555 B N DAL 7 B DAL 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 B SG DCY 6 B DCY 6 1_555 G CK WHL . B WHL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.735 ? covale ? covale9 B C DAL 7 B DAL 7 1_555 B N DTR 8 B DTR 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale10 B C DTR 8 B DTR 8 1_555 B N DPN 9 B DPN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale11 B C DPN 9 B DPN 9 1_555 B N DAL 10 B DAL 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale12 B C DAL 10 B DAL 10 1_555 B N DTR 11 B DTR 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale13 B C DTR 11 B DTR 11 1_555 B N DAL 12 B DAL 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale14 B C DAL 12 B DAL 12 1_555 B N DCY 13 B DCY 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale15 B C DCY 13 B DCY 13 1_555 B N DTY 14 B DTY 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale16 B SG DCY 13 B DCY 13 1_555 G CH WHL . B WHL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.761 ? covale ? covale17 B C DTY 14 B DTY 14 1_555 B N DSG 15 B DSG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale18 B C DSG 15 B DSG 15 1_555 B N DIL 16 B DIL 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale19 B C DIL 16 B DIL 16 1_555 B N NH2 17 B NH2 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C10 H12 N2 O2' _chem_comp.formula_weight 192.214 _chem_comp.id WHL _chem_comp.mon_nstd_flag . _chem_comp.name "N,N'-(1,4-phenylene)diacetamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CK CJ WHL sing 584 n n CJ NB WHL sing 585 n n CJ OA WHL doub 586 n n NB CC WHL sing 587 n n CC CB WHL doub 588 n y CC CD WHL sing 589 n y CB CA WHL sing 590 n y CD CE WHL doub 591 n y CA CF WHL doub 592 n y CE CF WHL sing 593 n y CF NA WHL sing 594 n n OB CG WHL doub 595 n n NA CG WHL sing 596 n n CG CH WHL sing 597 n n CA H1 WHL sing 598 n n CB H2 WHL sing 599 n n NB H3 WHL sing 600 n n CD H4 WHL sing 601 n n CE H5 WHL sing 602 n n CH H6 WHL sing 603 n n CH H7 WHL sing 604 n n CH H8 WHL sing 605 n n CK H9 WHL sing 606 n n CK H10 WHL sing 607 n n CK H11 WHL sing 608 n n NA H12 WHL sing 609 n n # _atom_sites.entry_id 8F14 _atom_sites.fract_transf_matrix[1][1] 0.021665 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011097 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01083 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 A 1 201 1 SO4 SO4 . D 4 EDO A 1 202 2 EDO EDO . E 4 EDO A 1 203 7 EDO EDO . F 4 EDO A 1 204 8 EDO EDO . G 5 WHL B 1 101 101 WHL WHL . H 6 HOH A 1 301 101 HOH HOH . H 6 HOH A 2 302 85 HOH HOH . H 6 HOH A 3 303 13 HOH HOH . H 6 HOH A 4 304 48 HOH HOH . H 6 HOH A 5 305 133 HOH HOH . H 6 HOH A 6 306 82 HOH HOH . H 6 HOH A 7 307 15 HOH HOH . H 6 HOH A 8 308 69 HOH HOH . H 6 HOH A 9 309 94 HOH HOH . H 6 HOH A 10 310 26 HOH HOH . H 6 HOH A 11 311 76 HOH HOH . H 6 HOH A 12 312 75 HOH HOH . H 6 HOH A 13 313 81 HOH HOH . H 6 HOH A 14 314 60 HOH HOH . H 6 HOH A 15 315 20 HOH HOH . H 6 HOH A 16 316 39 HOH HOH . H 6 HOH A 17 317 38 HOH HOH . H 6 HOH A 18 318 141 HOH HOH . H 6 HOH A 19 319 128 HOH HOH . H 6 HOH A 20 320 50 HOH HOH . H 6 HOH A 21 321 31 HOH HOH . H 6 HOH A 22 322 25 HOH HOH . H 6 HOH A 23 323 124 HOH HOH . H 6 HOH A 24 324 119 HOH HOH . H 6 HOH A 25 325 16 HOH HOH . H 6 HOH A 26 326 35 HOH HOH . H 6 HOH A 27 327 109 HOH HOH . H 6 HOH A 28 328 52 HOH HOH . H 6 HOH A 29 329 27 HOH HOH . H 6 HOH A 30 330 53 HOH HOH . H 6 HOH A 31 331 66 HOH HOH . H 6 HOH A 32 332 143 HOH HOH . H 6 HOH A 33 333 23 HOH HOH . H 6 HOH A 34 334 47 HOH HOH . H 6 HOH A 35 335 40 HOH HOH . H 6 HOH A 36 336 99 HOH HOH . H 6 HOH A 37 337 36 HOH HOH . H 6 HOH A 38 338 56 HOH HOH . H 6 HOH A 39 339 18 HOH HOH . H 6 HOH A 40 340 8 HOH HOH . H 6 HOH A 41 341 67 HOH HOH . H 6 HOH A 42 342 70 HOH HOH . H 6 HOH A 43 343 64 HOH HOH . H 6 HOH A 44 344 147 HOH HOH . H 6 HOH A 45 345 4 HOH HOH . H 6 HOH A 46 346 5 HOH HOH . H 6 HOH A 47 347 63 HOH HOH . H 6 HOH A 48 348 71 HOH HOH . H 6 HOH A 49 349 68 HOH HOH . H 6 HOH A 50 350 88 HOH HOH . H 6 HOH A 51 351 59 HOH HOH . H 6 HOH A 52 352 49 HOH HOH . H 6 HOH A 53 353 41 HOH HOH . H 6 HOH A 54 354 149 HOH HOH . H 6 HOH A 55 355 3 HOH HOH . H 6 HOH A 56 356 148 HOH HOH . H 6 HOH A 57 357 29 HOH HOH . H 6 HOH A 58 358 123 HOH HOH . H 6 HOH A 59 359 10 HOH HOH . H 6 HOH A 60 360 61 HOH HOH . H 6 HOH A 61 361 96 HOH HOH . H 6 HOH A 62 362 1 HOH HOH . H 6 HOH A 63 363 54 HOH HOH . H 6 HOH A 64 364 151 HOH HOH . H 6 HOH A 65 365 30 HOH HOH . H 6 HOH A 66 366 11 HOH HOH . H 6 HOH A 67 367 121 HOH HOH . H 6 HOH A 68 368 46 HOH HOH . H 6 HOH A 69 369 9 HOH HOH . H 6 HOH A 70 370 19 HOH HOH . H 6 HOH A 71 371 146 HOH HOH . H 6 HOH A 72 372 45 HOH HOH . H 6 HOH A 73 373 135 HOH HOH . H 6 HOH A 74 374 34 HOH HOH . H 6 HOH A 75 375 37 HOH HOH . H 6 HOH A 76 376 57 HOH HOH . H 6 HOH A 77 377 55 HOH HOH . H 6 HOH A 78 378 98 HOH HOH . H 6 HOH A 79 379 6 HOH HOH . H 6 HOH A 80 380 2 HOH HOH . H 6 HOH A 81 381 22 HOH HOH . H 6 HOH A 82 382 17 HOH HOH . H 6 HOH A 83 383 132 HOH HOH . H 6 HOH A 84 384 78 HOH HOH . H 6 HOH A 85 385 79 HOH HOH . H 6 HOH A 86 386 104 HOH HOH . H 6 HOH A 87 387 28 HOH HOH . H 6 HOH A 88 388 95 HOH HOH . H 6 HOH A 89 389 137 HOH HOH . H 6 HOH A 90 390 111 HOH HOH . H 6 HOH A 91 391 107 HOH HOH . H 6 HOH A 92 392 84 HOH HOH . H 6 HOH A 93 393 129 HOH HOH . H 6 HOH A 94 394 144 HOH HOH . H 6 HOH A 95 395 7 HOH HOH . H 6 HOH A 96 396 73 HOH HOH . H 6 HOH A 97 397 87 HOH HOH . H 6 HOH A 98 398 100 HOH HOH . H 6 HOH A 99 399 65 HOH HOH . H 6 HOH A 100 400 86 HOH HOH . H 6 HOH A 101 401 62 HOH HOH . H 6 HOH A 102 402 120 HOH HOH . H 6 HOH A 103 403 93 HOH HOH . H 6 HOH A 104 404 32 HOH HOH . H 6 HOH A 105 405 108 HOH HOH . H 6 HOH A 106 406 139 HOH HOH . H 6 HOH A 107 407 103 HOH HOH . H 6 HOH A 108 408 102 HOH HOH . H 6 HOH A 109 409 150 HOH HOH . H 6 HOH A 110 410 90 HOH HOH . H 6 HOH A 111 411 134 HOH HOH . H 6 HOH A 112 412 130 HOH HOH . H 6 HOH A 113 413 77 HOH HOH . H 6 HOH A 114 414 58 HOH HOH . H 6 HOH A 115 415 131 HOH HOH . H 6 HOH A 116 416 91 HOH HOH . H 6 HOH A 117 417 92 HOH HOH . H 6 HOH A 118 418 115 HOH HOH . H 6 HOH A 119 419 125 HOH HOH . H 6 HOH A 120 420 74 HOH HOH . H 6 HOH A 121 421 83 HOH HOH . I 6 HOH B 1 201 72 HOH HOH . I 6 HOH B 2 202 43 HOH HOH . I 6 HOH B 3 203 110 HOH HOH . I 6 HOH B 4 204 136 HOH HOH . I 6 HOH B 5 205 44 HOH HOH . I 6 HOH B 6 206 138 HOH HOH . I 6 HOH B 7 207 12 HOH HOH . I 6 HOH B 8 208 80 HOH HOH . I 6 HOH B 9 209 97 HOH HOH . I 6 HOH B 10 210 21 HOH HOH . I 6 HOH B 11 211 140 HOH HOH . I 6 HOH B 12 212 33 HOH HOH . I 6 HOH B 13 213 127 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA WHL . . . G 5 2.858 -23.514 20.26 1 30.39 ? CA WHL 101 B 1 HETATM 2 C CB WHL . . . G 5 2.19 -24.724 20.107 1 29.12 ? CB WHL 101 B 1 HETATM 3 N NB WHL . . . G 5 1.134 -26.699 21.163 1 39.32 ? NB WHL 101 B 1 HETATM 4 O OB WHL . . . G 5 4.902 -21.481 19.793 1 25.24 ? OB WHL 101 B 1 HETATM 5 C CG WHL . . . G 5 4.655 -21.078 20.896 1 24.92 ? CG WHL 101 B 1 HETATM 6 C CD WHL . . . G 5 2.084 -24.938 22.488 1 32.74 ? CD WHL 101 B 1 HETATM 7 C CE WHL . . . G 5 2.741 -23.744 22.654 1 33.6 ? CE WHL 101 B 1 HETATM 8 C CH WHL . . . G 5 5.257 -19.782 21.413 1 26.1 ? CH WHL 101 B 1 HETATM 9 C CC WHL . . . G 5 1.816 -25.427 21.222 1 31.89 ? CC WHL 101 B 1 HETATM 10 C CF WHL . . . G 5 3.129 -23.04 21.542 1 28.12 ? CF WHL 101 B 1 HETATM 11 C CJ WHL . . . G 5 1.134 -27.605 20.043 1 40.7 ? CJ WHL 101 B 1 HETATM 12 C CK WHL . . . G 5 0.38 -28.917 20.248 1 45.03 ? CK WHL 101 B 1 HETATM 13 N NA WHL . . . G 5 3.808 -21.803 21.783 1 23.42 ? NA WHL 101 B 1 HETATM 14 O OA WHL . . . G 5 1.684 -27.348 19.007 1 49.05 ? OA WHL 101 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 14 #