data_8F17 # _model_server_result.job_id GWF4vFLKxG5Fehqc0nJP6A _model_server_result.datetime_utc '2025-07-10 13:47:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f17 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":101}' # _entry.id 8F17 # _exptl.entry_id 8F17 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.214 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N,N'-(1,4-phenylene)diacetamide" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.31 _cell.angle_gamma 90 _cell.entry_id 8F17 _cell.length_a 38.03 _cell.length_b 72.71 _cell.length_c 59.79 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F17 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,H,J 1 1 B,D,F,G,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C DPR 2 C DPR 2 1_555 C N DLE 3 C DLE 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 C C DLE 3 C DLE 3 1_555 C N DAS 4 C DAS 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 C C DAS 4 C DAS 4 1_555 C N DLE 5 C DLE 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 C C DLE 5 C DLE 5 1_555 C N DCY 6 C DCY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 C C DCY 6 C DCY 6 1_555 C N DTY 7 C DTY 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 C SG DCY 6 C DCY 6 1_555 E CH WHL . C WHL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.76 ? covale ? covale7 C C DTY 7 C DTY 7 1_555 C N DTR 8 C DTR 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 C C DTR 8 C DTR 8 1_555 C N DAL 9 C DAL 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 C C DAL 9 C DAL 9 1_555 C N DSN 10 C DSN 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 C C DSN 10 C DSN 10 1_555 C N DLE 11 C DLE 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 C C DLE 11 C DLE 11 1_555 C N DHI 12 C DHI 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 C C DHI 12 C DHI 12 1_555 C N DCY 13 C DCY 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale13 C C DCY 13 C DCY 13 1_555 C N DIL 14 C DIL 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale14 C SG DCY 13 C DCY 13 1_555 E CK WHL . C WHL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale15 C C DIL 14 C DIL 14 1_555 C N DVA 15 C DVA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale16 C C DVA 15 C DVA 15 1_555 C N DSN 16 C DSN 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale17 C C DSN 16 C DSN 16 1_555 C N NH2 17 C NH2 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale18 D C ACE 1 D ACE 1 1_555 D N DPR 2 D DPR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale19 D C DPR 2 D DPR 2 1_555 D N DLE 3 D DLE 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale20 D C DLE 3 D DLE 3 1_555 D N DAS 4 D DAS 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale21 D C DAS 4 D DAS 4 1_555 D N DLE 5 D DLE 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale22 D C DLE 5 D DLE 5 1_555 D N DCY 6 D DCY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale23 D C DCY 6 D DCY 6 1_555 D N DTY 7 D DTY 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale24 D SG DCY 6 D DCY 6 1_555 F CH WHL . D WHL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.744 ? covale ? covale25 D C DTY 7 D DTY 7 1_555 D N DTR 8 D DTR 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale26 D C DTR 8 D DTR 8 1_555 D N DAL 9 D DAL 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale27 D C DAL 9 D DAL 9 1_555 D N DSN 10 D DSN 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale28 D C DSN 10 D DSN 10 1_555 D N DLE 11 D DLE 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale29 D C DLE 11 D DLE 11 1_555 D N DHI 12 D DHI 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale30 D C DHI 12 D DHI 12 1_555 D N DCY 13 D DCY 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale31 D C DCY 13 D DCY 13 1_555 D N DIL 14 D DIL 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale32 D SG DCY 13 D DCY 13 1_555 F CK WHL . D WHL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.776 ? covale ? covale33 D C DIL 14 D DIL 14 1_555 D N DVA 15 D DVA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale34 D C DVA 15 D DVA 15 1_555 D N DSN 16 D DSN 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C10 H12 N2 O2' _chem_comp.formula_weight 192.214 _chem_comp.id WHL _chem_comp.mon_nstd_flag . _chem_comp.name "N,N'-(1,4-phenylene)diacetamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CK CJ WHL sing 596 n n CJ NB WHL sing 597 n n CJ OA WHL doub 598 n n NB CC WHL sing 599 n n CC CB WHL doub 600 n y CC CD WHL sing 601 n y CB CA WHL sing 602 n y CD CE WHL doub 603 n y CA CF WHL doub 604 n y CE CF WHL sing 605 n y CF NA WHL sing 606 n n OB CG WHL doub 607 n n NA CG WHL sing 608 n n CG CH WHL sing 609 n n CA H1 WHL sing 610 n n CB H2 WHL sing 611 n n NB H3 WHL sing 612 n n CD H4 WHL sing 613 n n CE H5 WHL sing 614 n n CH H6 WHL sing 615 n n CH H7 WHL sing 616 n n CH H8 WHL sing 617 n n CK H9 WHL sing 618 n n CK H10 WHL sing 619 n n CK H11 WHL sing 620 n n NA H12 WHL sing 621 n n # _atom_sites.entry_id 8F17 _atom_sites.fract_transf_matrix[1][1] 0.026295 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002908 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013753 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016827 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 WHL C 1 101 101 WHL WHL . F 3 WHL D 1 101 101 WHL WHL . G 4 EDO D 1 102 102 EDO EDO . H 5 HOH A 1 201 201 HOH HOH . H 5 HOH A 2 202 202 HOH HOH . H 5 HOH A 3 203 203 HOH HOH . H 5 HOH A 4 204 204 HOH HOH . H 5 HOH A 5 205 205 HOH HOH . H 5 HOH A 6 206 206 HOH HOH . H 5 HOH A 7 207 207 HOH HOH . H 5 HOH A 8 208 208 HOH HOH . H 5 HOH A 9 209 209 HOH HOH . H 5 HOH A 10 210 210 HOH HOH . H 5 HOH A 11 211 211 HOH HOH . H 5 HOH A 12 212 212 HOH HOH . H 5 HOH A 13 213 213 HOH HOH . H 5 HOH A 14 214 214 HOH HOH . H 5 HOH A 15 215 215 HOH HOH . H 5 HOH A 16 216 216 HOH HOH . H 5 HOH A 17 217 217 HOH HOH . H 5 HOH A 18 218 218 HOH HOH . H 5 HOH A 19 219 219 HOH HOH . H 5 HOH A 20 220 220 HOH HOH . H 5 HOH A 21 221 221 HOH HOH . H 5 HOH A 22 222 222 HOH HOH . H 5 HOH A 23 223 223 HOH HOH . H 5 HOH A 24 224 224 HOH HOH . I 5 HOH B 1 201 201 HOH HOH . I 5 HOH B 2 202 202 HOH HOH . I 5 HOH B 3 203 203 HOH HOH . I 5 HOH B 4 204 204 HOH HOH . I 5 HOH B 5 205 205 HOH HOH . I 5 HOH B 6 206 206 HOH HOH . I 5 HOH B 7 207 207 HOH HOH . I 5 HOH B 8 208 208 HOH HOH . I 5 HOH B 9 209 209 HOH HOH . I 5 HOH B 10 210 210 HOH HOH . I 5 HOH B 11 211 211 HOH HOH . I 5 HOH B 12 212 212 HOH HOH . I 5 HOH B 13 213 213 HOH HOH . I 5 HOH B 14 214 214 HOH HOH . I 5 HOH B 15 215 215 HOH HOH . I 5 HOH B 16 216 216 HOH HOH . I 5 HOH B 17 217 217 HOH HOH . I 5 HOH B 18 218 218 HOH HOH . I 5 HOH B 19 219 219 HOH HOH . I 5 HOH B 20 220 220 HOH HOH . I 5 HOH B 21 221 221 HOH HOH . I 5 HOH B 22 222 222 HOH HOH . J 5 HOH C 1 201 201 HOH HOH . K 5 HOH D 1 201 201 HOH HOH . K 5 HOH D 2 202 202 HOH HOH . K 5 HOH D 3 203 203 HOH HOH . K 5 HOH D 4 204 204 HOH HOH . K 5 HOH D 5 205 205 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA WHL . . . F 3 17.326 5.894 19.969 1 50 ? CA WHL 101 D 1 HETATM 2 C CB WHL . . . F 3 17.362 6.471 21.228 1 49.12 ? CB WHL 101 D 1 HETATM 3 N NB WHL . . . F 3 17.062 6.334 23.712 1 48.14 ? NB WHL 101 D 1 HETATM 4 O OB WHL . . . F 3 17.088 5.702 17.145 1 45.65 ? OB WHL 101 D 1 HETATM 5 C CG WHL . . . F 3 16.974 4.533 17.257 1 43.48 ? CG WHL 101 D 1 HETATM 6 C CD WHL . . . F 3 16.65 4.432 22.23 1 45.65 ? CD WHL 101 D 1 HETATM 7 C CE WHL . . . F 3 16.606 3.849 20.972 1 45.94 ? CE WHL 101 D 1 HETATM 8 C CH WHL . . . F 3 16.917 3.677 15.996 1 44.56 ? CH WHL 101 D 1 HETATM 9 C CC WHL . . . F 3 17.026 5.751 22.37 1 36.13 ? CC WHL 101 D 1 HETATM 10 C CF WHL . . . F 3 16.937 4.57 19.839 1 53.45 ? CF WHL 101 D 1 HETATM 11 C CJ WHL . . . F 3 17.607 7.648 24.048 1 58.16 ? CJ WHL 101 D 1 HETATM 12 C CK WHL . . . F 3 17.61 8.157 25.492 1 54.15 ? CK WHL 101 D 1 HETATM 13 N NA WHL . . . F 3 16.882 3.883 18.556 1 48.56 ? NA WHL 101 D 1 HETATM 14 O OA WHL . . . F 3 18.052 8.353 23.207 1 56.81 ? OA WHL 101 D 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 355 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #