data_8F17
#
_model_server_result.job_id            GWF4vFLKxG5Fehqc0nJP6A 
_model_server_result.datetime_utc      '2025-07-10 13:47:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8f17 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":101}' 
#
_entry.id    8F17 
#
_exptl.entry_id    8F17 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              192.214 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "N,N'-(1,4-phenylene)diacetamide" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.31 
_cell.angle_gamma         90 
_cell.entry_id            8F17 
_cell.length_a            38.03 
_cell.length_b            72.71 
_cell.length_c            59.79 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8F17 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,H,J 1 1 
B,D,F,G,I,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C C DPR 2 C DPR 2 1_555 C N DLE 3 C DLE 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 C C DLE 3 C DLE 3 1_555 C N DAS 4 C DAS 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 C C DAS 4 C DAS 4 1_555 C N DLE 5 C DLE 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale4 C C DLE 5 C DLE 5 1_555 C N DCY 6 C DCY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale5 C C DCY 6 C DCY 6 1_555 C N DTY 7 C DTY 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale6 C SG DCY 6 C DCY 6 1_555 E CH WHL . C WHL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.76 ? 
covale ? covale7 C C DTY 7 C DTY 7 1_555 C N DTR 8 C DTR 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale8 C C DTR 8 C DTR 8 1_555 C N DAL 9 C DAL 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale9 C C DAL 9 C DAL 9 1_555 C N DSN 10 C DSN 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale10 C C DSN 10 C DSN 10 1_555 C N DLE 11 C DLE 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale11 C C DLE 11 C DLE 11 1_555 C N DHI 12 C DHI 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale12 C C DHI 12 C DHI 12 1_555 C N DCY 13 C DCY 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale13 C C DCY 13 C DCY 13 1_555 C N DIL 14 C DIL 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale14 C SG DCY 13 C DCY 13 1_555 E CK WHL . C WHL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? 
covale ? covale15 C C DIL 14 C DIL 14 1_555 C N DVA 15 C DVA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale16 C C DVA 15 C DVA 15 1_555 C N DSN 16 C DSN 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale17 C C DSN 16 C DSN 16 1_555 C N NH2 17 C NH2 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale18 D C ACE 1 D ACE 1 1_555 D N DPR 2 D DPR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale19 D C DPR 2 D DPR 2 1_555 D N DLE 3 D DLE 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale20 D C DLE 3 D DLE 3 1_555 D N DAS 4 D DAS 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale21 D C DAS 4 D DAS 4 1_555 D N DLE 5 D DLE 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale22 D C DLE 5 D DLE 5 1_555 D N DCY 6 D DCY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale23 D C DCY 6 D DCY 6 1_555 D N DTY 7 D DTY 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale24 D SG DCY 6 D DCY 6 1_555 F CH WHL . D WHL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.744 ? 
covale ? covale25 D C DTY 7 D DTY 7 1_555 D N DTR 8 D DTR 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale26 D C DTR 8 D DTR 8 1_555 D N DAL 9 D DAL 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale27 D C DAL 9 D DAL 9 1_555 D N DSN 10 D DSN 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale28 D C DSN 10 D DSN 10 1_555 D N DLE 11 D DLE 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale29 D C DLE 11 D DLE 11 1_555 D N DHI 12 D DHI 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale30 D C DHI 12 D DHI 12 1_555 D N DCY 13 D DCY 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale31 D C DCY 13 D DCY 13 1_555 D N DIL 14 D DIL 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale32 D SG DCY 13 D DCY 13 1_555 F CK WHL . D WHL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.776 ? 
covale ? covale33 D C DIL 14 D DIL 14 1_555 D N DVA 15 D DVA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale34 D C DVA 15 D DVA 15 1_555 D N DSN 16 D DSN 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
#
_chem_comp.formula           'C10 H12 N2 O2' 
_chem_comp.formula_weight    192.214 
_chem_comp.id                WHL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "N,N'-(1,4-phenylene)diacetamide" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CK CJ WHL sing 596 n n 
CJ NB WHL sing 597 n n 
CJ OA WHL doub 598 n n 
NB CC WHL sing 599 n n 
CC CB WHL doub 600 n y 
CC CD WHL sing 601 n y 
CB CA WHL sing 602 n y 
CD CE WHL doub 603 n y 
CA CF WHL doub 604 n y 
CE CF WHL sing 605 n y 
CF NA WHL sing 606 n n 
OB CG WHL doub 607 n n 
NA CG WHL sing 608 n n 
CG CH WHL sing 609 n n 
CA H1 WHL sing 610 n n 
CB H2 WHL sing 611 n n 
NB H3 WHL sing 612 n n 
CD H4 WHL sing 613 n n 
CE H5 WHL sing 614 n n 
CH H6 WHL sing 615 n n 
CH H7 WHL sing 616 n n 
CH H8 WHL sing 617 n n 
CK H9 WHL sing 618 n n 
CK H10 WHL sing 619 n n 
CK H11 WHL sing 620 n n 
NA H12 WHL sing 621 n n 
#
_atom_sites.entry_id                     8F17 
_atom_sites.fract_transf_matrix[1][1]    0.026295 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002908 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013753 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016827 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 WHL C 1 101 101 WHL WHL . 
F 3 WHL D 1 101 101 WHL WHL . 
G 4 EDO D 1 102 102 EDO EDO . 
H 5 HOH A 1 201 201 HOH HOH . 
H 5 HOH A 2 202 202 HOH HOH . 
H 5 HOH A 3 203 203 HOH HOH . 
H 5 HOH A 4 204 204 HOH HOH . 
H 5 HOH A 5 205 205 HOH HOH . 
H 5 HOH A 6 206 206 HOH HOH . 
H 5 HOH A 7 207 207 HOH HOH . 
H 5 HOH A 8 208 208 HOH HOH . 
H 5 HOH A 9 209 209 HOH HOH . 
H 5 HOH A 10 210 210 HOH HOH . 
H 5 HOH A 11 211 211 HOH HOH . 
H 5 HOH A 12 212 212 HOH HOH . 
H 5 HOH A 13 213 213 HOH HOH . 
H 5 HOH A 14 214 214 HOH HOH . 
H 5 HOH A 15 215 215 HOH HOH . 
H 5 HOH A 16 216 216 HOH HOH . 
H 5 HOH A 17 217 217 HOH HOH . 
H 5 HOH A 18 218 218 HOH HOH . 
H 5 HOH A 19 219 219 HOH HOH . 
H 5 HOH A 20 220 220 HOH HOH . 
H 5 HOH A 21 221 221 HOH HOH . 
H 5 HOH A 22 222 222 HOH HOH . 
H 5 HOH A 23 223 223 HOH HOH . 
H 5 HOH A 24 224 224 HOH HOH . 
I 5 HOH B 1 201 201 HOH HOH . 
I 5 HOH B 2 202 202 HOH HOH . 
I 5 HOH B 3 203 203 HOH HOH . 
I 5 HOH B 4 204 204 HOH HOH . 
I 5 HOH B 5 205 205 HOH HOH . 
I 5 HOH B 6 206 206 HOH HOH . 
I 5 HOH B 7 207 207 HOH HOH . 
I 5 HOH B 8 208 208 HOH HOH . 
I 5 HOH B 9 209 209 HOH HOH . 
I 5 HOH B 10 210 210 HOH HOH . 
I 5 HOH B 11 211 211 HOH HOH . 
I 5 HOH B 12 212 212 HOH HOH . 
I 5 HOH B 13 213 213 HOH HOH . 
I 5 HOH B 14 214 214 HOH HOH . 
I 5 HOH B 15 215 215 HOH HOH . 
I 5 HOH B 16 216 216 HOH HOH . 
I 5 HOH B 17 217 217 HOH HOH . 
I 5 HOH B 18 218 218 HOH HOH . 
I 5 HOH B 19 219 219 HOH HOH . 
I 5 HOH B 20 220 220 HOH HOH . 
I 5 HOH B 21 221 221 HOH HOH . 
I 5 HOH B 22 222 222 HOH HOH . 
J 5 HOH C 1 201 201 HOH HOH . 
K 5 HOH D 1 201 201 HOH HOH . 
K 5 HOH D 2 202 202 HOH HOH . 
K 5 HOH D 3 203 203 HOH HOH . 
K 5 HOH D 4 204 204 HOH HOH . 
K 5 HOH D 5 205 205 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CA WHL . . . F 3 17.326 5.894 19.969 1 50 ? CA WHL 101 D 1 
HETATM 2 C CB WHL . . . F 3 17.362 6.471 21.228 1 49.12 ? CB WHL 101 D 1 
HETATM 3 N NB WHL . . . F 3 17.062 6.334 23.712 1 48.14 ? NB WHL 101 D 1 
HETATM 4 O OB WHL . . . F 3 17.088 5.702 17.145 1 45.65 ? OB WHL 101 D 1 
HETATM 5 C CG WHL . . . F 3 16.974 4.533 17.257 1 43.48 ? CG WHL 101 D 1 
HETATM 6 C CD WHL . . . F 3 16.65 4.432 22.23 1 45.65 ? CD WHL 101 D 1 
HETATM 7 C CE WHL . . . F 3 16.606 3.849 20.972 1 45.94 ? CE WHL 101 D 1 
HETATM 8 C CH WHL . . . F 3 16.917 3.677 15.996 1 44.56 ? CH WHL 101 D 1 
HETATM 9 C CC WHL . . . F 3 17.026 5.751 22.37 1 36.13 ? CC WHL 101 D 1 
HETATM 10 C CF WHL . . . F 3 16.937 4.57 19.839 1 53.45 ? CF WHL 101 D 1 
HETATM 11 C CJ WHL . . . F 3 17.607 7.648 24.048 1 58.16 ? CJ WHL 101 D 1 
HETATM 12 C CK WHL . . . F 3 17.61 8.157 25.492 1 54.15 ? CK WHL 101 D 1 
HETATM 13 N NA WHL . . . F 3 16.882 3.883 18.556 1 48.56 ? NA WHL 101 D 1 
HETATM 14 O OA WHL . . . F 3 18.052 8.353 23.207 1 56.81 ? OA WHL 101 D 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           355 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           14 
#