data_8F1G # _model_server_result.job_id EAEFFvedjwXQxlJhBNBsEQ _model_server_result.datetime_utc '2024-10-20 19:09:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f1g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 8F1G # _exptl.entry_id 8F1G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.7 _cell.angle_gamma 90 _cell.entry_id 8F1G _cell.length_a 62.966 _cell.length_b 80.243 _cell.length_c 64.183 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F1G _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,P 1 1 B,J,K,L,M,N,O,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 K N N ? 3 L N N ? 3 M N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8F1G _atom_sites.fract_transf_matrix[1][1] 0.015882 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003872 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012462 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016037 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 X8N A 1 401 1 X8N LI1 . D 3 GOL A 1 402 2 GOL GOL . E 3 GOL A 1 403 3 GOL GOL . F 3 GOL A 1 404 5 GOL GOL . G 3 GOL A 1 405 7 GOL GOL . H 4 SO4 A 1 406 101 SO4 SO4 . I 5 PGE A 1 407 202 PGE PGE . J 2 X8N B 1 401 2 X8N LI1 . K 3 GOL B 1 402 1 GOL GOL . L 3 GOL B 1 403 4 GOL GOL . M 3 GOL B 1 404 6 GOL GOL . N 4 SO4 B 1 405 102 SO4 SO4 . O 5 PGE B 1 406 201 PGE PGE . P 6 HOH A 1 501 64 HOH HOH . P 6 HOH A 2 502 147 HOH HOH . P 6 HOH A 3 503 51 HOH HOH . P 6 HOH A 4 504 41 HOH HOH . P 6 HOH A 5 505 67 HOH HOH . P 6 HOH A 6 506 197 HOH HOH . P 6 HOH A 7 507 152 HOH HOH . P 6 HOH A 8 508 231 HOH HOH . P 6 HOH A 9 509 72 HOH HOH . P 6 HOH A 10 510 53 HOH HOH . P 6 HOH A 11 511 119 HOH HOH . P 6 HOH A 12 512 29 HOH HOH . P 6 HOH A 13 513 77 HOH HOH . P 6 HOH A 14 514 178 HOH HOH . P 6 HOH A 15 515 93 HOH HOH . P 6 HOH A 16 516 121 HOH HOH . P 6 HOH A 17 517 127 HOH HOH . P 6 HOH A 18 518 128 HOH HOH . P 6 HOH A 19 519 103 HOH HOH . P 6 HOH A 20 520 12 HOH HOH . P 6 HOH A 21 521 218 HOH HOH . P 6 HOH A 22 522 28 HOH HOH . P 6 HOH A 23 523 84 HOH HOH . P 6 HOH A 24 524 99 HOH HOH . P 6 HOH A 25 525 10 HOH HOH . P 6 HOH A 26 526 177 HOH HOH . P 6 HOH A 27 527 23 HOH HOH . P 6 HOH A 28 528 191 HOH HOH . P 6 HOH A 29 529 113 HOH HOH . P 6 HOH A 30 530 3 HOH HOH . P 6 HOH A 31 531 98 HOH HOH . P 6 HOH A 32 532 236 HOH HOH . P 6 HOH A 33 533 7 HOH HOH . P 6 HOH A 34 534 36 HOH HOH . P 6 HOH A 35 535 143 HOH HOH . P 6 HOH A 36 536 62 HOH HOH . P 6 HOH A 37 537 85 HOH HOH . P 6 HOH A 38 538 109 HOH HOH . P 6 HOH A 39 539 65 HOH HOH . P 6 HOH A 40 540 239 HOH HOH . P 6 HOH A 41 541 96 HOH HOH . P 6 HOH A 42 542 9 HOH HOH . P 6 HOH A 43 543 30 HOH HOH . P 6 HOH A 44 544 50 HOH HOH . P 6 HOH A 45 545 26 HOH HOH . P 6 HOH A 46 546 262 HOH HOH . P 6 HOH A 47 547 4 HOH HOH . P 6 HOH A 48 548 125 HOH HOH . P 6 HOH A 49 549 245 HOH HOH . P 6 HOH A 50 550 237 HOH HOH . P 6 HOH A 51 551 13 HOH HOH . P 6 HOH A 52 552 71 HOH HOH . P 6 HOH A 53 553 149 HOH HOH . P 6 HOH A 54 554 20 HOH HOH . P 6 HOH A 55 555 129 HOH HOH . P 6 HOH A 56 556 192 HOH HOH . P 6 HOH A 57 557 151 HOH HOH . P 6 HOH A 58 558 148 HOH HOH . P 6 HOH A 59 559 166 HOH HOH . P 6 HOH A 60 560 55 HOH HOH . P 6 HOH A 61 561 87 HOH HOH . P 6 HOH A 62 562 144 HOH HOH . P 6 HOH A 63 563 173 HOH HOH . P 6 HOH A 64 564 57 HOH HOH . P 6 HOH A 65 565 101 HOH HOH . P 6 HOH A 66 566 49 HOH HOH . P 6 HOH A 67 567 117 HOH HOH . P 6 HOH A 68 568 136 HOH HOH . P 6 HOH A 69 569 47 HOH HOH . P 6 HOH A 70 570 31 HOH HOH . P 6 HOH A 71 571 56 HOH HOH . P 6 HOH A 72 572 194 HOH HOH . P 6 HOH A 73 573 111 HOH HOH . P 6 HOH A 74 574 196 HOH HOH . P 6 HOH A 75 575 251 HOH HOH . P 6 HOH A 76 576 25 HOH HOH . P 6 HOH A 77 577 186 HOH HOH . P 6 HOH A 78 578 235 HOH HOH . P 6 HOH A 79 579 110 HOH HOH . P 6 HOH A 80 580 217 HOH HOH . P 6 HOH A 81 581 39 HOH HOH . P 6 HOH A 82 582 222 HOH HOH . P 6 HOH A 83 583 168 HOH HOH . P 6 HOH A 84 584 156 HOH HOH . P 6 HOH A 85 585 246 HOH HOH . P 6 HOH A 86 586 86 HOH HOH . P 6 HOH A 87 587 33 HOH HOH . P 6 HOH A 88 588 264 HOH HOH . P 6 HOH A 89 589 48 HOH HOH . P 6 HOH A 90 590 263 HOH HOH . P 6 HOH A 91 591 259 HOH HOH . P 6 HOH A 92 592 8 HOH HOH . P 6 HOH A 93 593 213 HOH HOH . P 6 HOH A 94 594 91 HOH HOH . P 6 HOH A 95 595 137 HOH HOH . P 6 HOH A 96 596 69 HOH HOH . P 6 HOH A 97 597 256 HOH HOH . P 6 HOH A 98 598 252 HOH HOH . P 6 HOH A 99 599 227 HOH HOH . P 6 HOH A 100 600 241 HOH HOH . P 6 HOH A 101 601 115 HOH HOH . P 6 HOH A 102 602 63 HOH HOH . P 6 HOH A 103 603 161 HOH HOH . P 6 HOH A 104 604 135 HOH HOH . P 6 HOH A 105 605 171 HOH HOH . P 6 HOH A 106 606 132 HOH HOH . P 6 HOH A 107 607 88 HOH HOH . P 6 HOH A 108 608 212 HOH HOH . P 6 HOH A 109 609 6 HOH HOH . P 6 HOH A 110 610 139 HOH HOH . P 6 HOH A 111 611 134 HOH HOH . P 6 HOH A 112 612 261 HOH HOH . P 6 HOH A 113 613 243 HOH HOH . P 6 HOH A 114 614 220 HOH HOH . P 6 HOH A 115 615 216 HOH HOH . P 6 HOH A 116 616 145 HOH HOH . P 6 HOH A 117 617 165 HOH HOH . P 6 HOH A 118 618 169 HOH HOH . P 6 HOH A 119 619 60 HOH HOH . P 6 HOH A 120 620 131 HOH HOH . P 6 HOH A 121 621 102 HOH HOH . P 6 HOH A 122 622 181 HOH HOH . P 6 HOH A 123 623 45 HOH HOH . P 6 HOH A 124 624 268 HOH HOH . P 6 HOH A 125 625 54 HOH HOH . P 6 HOH A 126 626 70 HOH HOH . P 6 HOH A 127 627 265 HOH HOH . P 6 HOH A 128 628 187 HOH HOH . P 6 HOH A 129 629 59 HOH HOH . Q 6 HOH B 1 501 180 HOH HOH . Q 6 HOH B 2 502 81 HOH HOH . Q 6 HOH B 3 503 157 HOH HOH . Q 6 HOH B 4 504 14 HOH HOH . Q 6 HOH B 5 505 94 HOH HOH . Q 6 HOH B 6 506 44 HOH HOH . Q 6 HOH B 7 507 201 HOH HOH . Q 6 HOH B 8 508 76 HOH HOH . Q 6 HOH B 9 509 153 HOH HOH . Q 6 HOH B 10 510 190 HOH HOH . Q 6 HOH B 11 511 118 HOH HOH . Q 6 HOH B 12 512 2 HOH HOH . Q 6 HOH B 13 513 38 HOH HOH . Q 6 HOH B 14 514 92 HOH HOH . Q 6 HOH B 15 515 15 HOH HOH . Q 6 HOH B 16 516 100 HOH HOH . Q 6 HOH B 17 517 106 HOH HOH . Q 6 HOH B 18 518 133 HOH HOH . Q 6 HOH B 19 519 75 HOH HOH . Q 6 HOH B 20 520 154 HOH HOH . Q 6 HOH B 21 521 179 HOH HOH . Q 6 HOH B 22 522 40 HOH HOH . Q 6 HOH B 23 523 105 HOH HOH . Q 6 HOH B 24 524 73 HOH HOH . Q 6 HOH B 25 525 221 HOH HOH . Q 6 HOH B 26 526 247 HOH HOH . Q 6 HOH B 27 527 43 HOH HOH . Q 6 HOH B 28 528 226 HOH HOH . Q 6 HOH B 29 529 207 HOH HOH . Q 6 HOH B 30 530 89 HOH HOH . Q 6 HOH B 31 531 42 HOH HOH . Q 6 HOH B 32 532 255 HOH HOH . Q 6 HOH B 33 533 232 HOH HOH . Q 6 HOH B 34 534 66 HOH HOH . Q 6 HOH B 35 535 214 HOH HOH . Q 6 HOH B 36 536 130 HOH HOH . Q 6 HOH B 37 537 68 HOH HOH . Q 6 HOH B 38 538 150 HOH HOH . Q 6 HOH B 39 539 126 HOH HOH . Q 6 HOH B 40 540 183 HOH HOH . Q 6 HOH B 41 541 182 HOH HOH . Q 6 HOH B 42 542 120 HOH HOH . Q 6 HOH B 43 543 200 HOH HOH . Q 6 HOH B 44 544 184 HOH HOH . Q 6 HOH B 45 545 163 HOH HOH . Q 6 HOH B 46 546 58 HOH HOH . Q 6 HOH B 47 547 140 HOH HOH . Q 6 HOH B 48 548 35 HOH HOH . Q 6 HOH B 49 549 112 HOH HOH . Q 6 HOH B 50 550 162 HOH HOH . Q 6 HOH B 51 551 189 HOH HOH . Q 6 HOH B 52 552 167 HOH HOH . Q 6 HOH B 53 553 202 HOH HOH . Q 6 HOH B 54 554 74 HOH HOH . Q 6 HOH B 55 555 90 HOH HOH . Q 6 HOH B 56 556 61 HOH HOH . Q 6 HOH B 57 557 19 HOH HOH . Q 6 HOH B 58 558 16 HOH HOH . Q 6 HOH B 59 559 5 HOH HOH . Q 6 HOH B 60 560 34 HOH HOH . Q 6 HOH B 61 561 116 HOH HOH . Q 6 HOH B 62 562 1 HOH HOH . Q 6 HOH B 63 563 229 HOH HOH . Q 6 HOH B 64 564 254 HOH HOH . Q 6 HOH B 65 565 18 HOH HOH . Q 6 HOH B 66 566 215 HOH HOH . Q 6 HOH B 67 567 138 HOH HOH . Q 6 HOH B 68 568 80 HOH HOH . Q 6 HOH B 69 569 155 HOH HOH . Q 6 HOH B 70 570 248 HOH HOH . Q 6 HOH B 71 571 234 HOH HOH . Q 6 HOH B 72 572 253 HOH HOH . Q 6 HOH B 73 573 46 HOH HOH . Q 6 HOH B 74 574 230 HOH HOH . Q 6 HOH B 75 575 107 HOH HOH . Q 6 HOH B 76 576 11 HOH HOH . Q 6 HOH B 77 577 52 HOH HOH . Q 6 HOH B 78 578 32 HOH HOH . Q 6 HOH B 79 579 175 HOH HOH . Q 6 HOH B 80 580 195 HOH HOH . Q 6 HOH B 81 581 219 HOH HOH . Q 6 HOH B 82 582 17 HOH HOH . Q 6 HOH B 83 583 198 HOH HOH . Q 6 HOH B 84 584 108 HOH HOH . Q 6 HOH B 85 585 244 HOH HOH . Q 6 HOH B 86 586 238 HOH HOH . Q 6 HOH B 87 587 242 HOH HOH . Q 6 HOH B 88 588 24 HOH HOH . Q 6 HOH B 89 589 204 HOH HOH . Q 6 HOH B 90 590 188 HOH HOH . Q 6 HOH B 91 591 205 HOH HOH . Q 6 HOH B 92 592 97 HOH HOH . Q 6 HOH B 93 593 124 HOH HOH . Q 6 HOH B 94 594 159 HOH HOH . Q 6 HOH B 95 595 174 HOH HOH . Q 6 HOH B 96 596 160 HOH HOH . Q 6 HOH B 97 597 258 HOH HOH . Q 6 HOH B 98 598 206 HOH HOH . Q 6 HOH B 99 599 123 HOH HOH . Q 6 HOH B 100 600 193 HOH HOH . Q 6 HOH B 101 601 210 HOH HOH . Q 6 HOH B 102 602 22 HOH HOH . Q 6 HOH B 103 603 257 HOH HOH . Q 6 HOH B 104 604 37 HOH HOH . Q 6 HOH B 105 605 114 HOH HOH . Q 6 HOH B 106 606 158 HOH HOH . Q 6 HOH B 107 607 164 HOH HOH . Q 6 HOH B 108 608 250 HOH HOH . Q 6 HOH B 109 609 146 HOH HOH . Q 6 HOH B 110 610 78 HOH HOH . Q 6 HOH B 111 611 95 HOH HOH . Q 6 HOH B 112 612 240 HOH HOH . Q 6 HOH B 113 613 27 HOH HOH . Q 6 HOH B 114 614 203 HOH HOH . Q 6 HOH B 115 615 223 HOH HOH . Q 6 HOH B 116 616 199 HOH HOH . Q 6 HOH B 117 617 228 HOH HOH . Q 6 HOH B 118 618 224 HOH HOH . Q 6 HOH B 119 619 141 HOH HOH . Q 6 HOH B 120 620 170 HOH HOH . Q 6 HOH B 121 621 21 HOH HOH . Q 6 HOH B 122 622 79 HOH HOH . Q 6 HOH B 123 623 269 HOH HOH . Q 6 HOH B 124 624 249 HOH HOH . Q 6 HOH B 125 625 233 HOH HOH . Q 6 HOH B 126 626 208 HOH HOH . Q 6 HOH B 127 627 260 HOH HOH . Q 6 HOH B 128 628 209 HOH HOH . Q 6 HOH B 129 629 211 HOH HOH . Q 6 HOH B 130 630 267 HOH HOH . Q 6 HOH B 131 631 104 HOH HOH . Q 6 HOH B 132 632 82 HOH HOH . Q 6 HOH B 133 633 172 HOH HOH . Q 6 HOH B 134 634 83 HOH HOH . Q 6 HOH B 135 635 142 HOH HOH . Q 6 HOH B 136 636 122 HOH HOH . Q 6 HOH B 137 637 176 HOH HOH . Q 6 HOH B 138 638 266 HOH HOH . Q 6 HOH B 139 639 185 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 7.208 -14.565 2.147 1 70.3 ? C1 GOL 403 A 1 HETATM 2 O O1 GOL . . . E 3 7.355 -13.37 2.899 1 72.06 ? O1 GOL 403 A 1 HETATM 3 C C2 GOL . . . E 3 8.179 -14.587 0.99 1 68.62 ? C2 GOL 403 A 1 HETATM 4 O O2 GOL . . . E 3 9.504 -14.428 1.493 1 65.88 ? O2 GOL 403 A 1 HETATM 5 C C3 GOL . . . E 3 8.087 -15.888 0.223 1 69.52 ? C3 GOL 403 A 1 HETATM 6 O O3 GOL . . . E 3 6.912 -15.943 -0.579 1 69.22 ? O3 GOL 403 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #