data_8F1H # _model_server_result.job_id ZZt9NY7CSt1ng1n5dOoKlg _model_server_result.datetime_utc '2024-12-02 23:42:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f1h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 8F1H # _exptl.entry_id 8F1H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 396.445 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(5P,8S,10R)-4-amino-6-methyl-5-(quinolin-3-yl)-8,9-dihydropyrimido[5,4-b]indolizin-8-yl]prop-2-enamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8F1H _cell.length_a 146.317 _cell.length_b 146.317 _cell.length_c 146.317 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F1H _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 106 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 797 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C08 _struct_conn.ptnr2_label_comp_id X9H _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id X9H _struct_conn.ptnr2_auth_seq_id 1101 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.767 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C23 H20 N6 O' _chem_comp.formula_weight 396.445 _chem_comp.id X9H _chem_comp.mon_nstd_flag . _chem_comp.name N-[(5P,8S,10R)-4-amino-6-methyl-5-(quinolin-3-yl)-8,9-dihydropyrimido[5,4-b]indolizin-8-yl]prop-2-enamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 C20 X9H doub 396 n y C19 C18 X9H sing 397 n y C20 C21 X9H sing 398 n y C18 C17 X9H doub 399 n y C17 C16 X9H sing 400 n y C21 C16 X9H doub 401 n y C21 N22 X9H sing 402 n y C16 C15 X9H sing 403 n y N22 C23 X9H doub 404 n y C23 C14 X9H sing 405 n y C15 C14 X9H doub 406 n y C14 C13 X9H sing 407 n n C01 C02 X9H sing 408 n n N26 C25 X9H sing 409 n n C13 C12 X9H doub 410 n y C13 C24 X9H sing 411 n y C02 C12 X9H sing 412 n n C02 C03 X9H doub 413 n n C12 N11 X9H sing 414 n y C25 C24 X9H doub 415 n y C25 N27 X9H sing 416 n y C24 C30 X9H sing 417 n y C03 C04 X9H sing 418 n n N11 C30 X9H sing 419 n y N11 C10 X9H sing 420 n n N27 C28 X9H doub 421 n y C30 N29 X9H doub 422 n y C04 N05 X9H sing 423 n n C04 C10 X9H sing 424 n n N05 C06 X9H sing 425 n n C28 N29 X9H sing 426 n y C06 O09 X9H doub 427 n n C06 C07 X9H sing 428 n n C08 C07 X9H doub 429 n n C01 H1 X9H sing 430 n n C01 H2 X9H sing 431 n n C01 H3 X9H sing 432 n n C03 H5 X9H sing 433 n n C04 H7 X9H sing 434 n n C07 H8 X9H sing 435 n n C08 H9 X9H sing 436 n n C08 H10 X9H sing 437 n n C10 H11 X9H sing 438 n n C10 H12 X9H sing 439 n n C15 H13 X9H sing 440 n n C17 H14 X9H sing 441 n n C18 H15 X9H sing 442 n n C19 H16 X9H sing 443 n n C20 H17 X9H sing 444 n n C23 H18 X9H sing 445 n n C28 H19 X9H sing 446 n n N05 H20 X9H sing 447 n n N26 H21 X9H sing 448 n n N26 H22 X9H sing 449 n n # _atom_sites.entry_id 8F1H _atom_sites.fract_transf_matrix[1][1] 0.006834 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006834 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006834 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 X9H A 1 1101 1101 X9H TAS . C 3 CIT A 1 1102 1102 CIT FLC . D 4 HOH A 1 1201 1079 HOH HOH . D 4 HOH A 2 1202 1074 HOH HOH . D 4 HOH A 3 1203 1072 HOH HOH . D 4 HOH A 4 1204 1077 HOH HOH . D 4 HOH A 5 1205 1075 HOH HOH . D 4 HOH A 6 1206 1076 HOH HOH . D 4 HOH A 7 1207 1080 HOH HOH . D 4 HOH A 8 1208 1081 HOH HOH . D 4 HOH A 9 1209 1071 HOH HOH . D 4 HOH A 10 1210 1078 HOH HOH . D 4 HOH A 11 1211 1073 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 X9H . . . B 2 50.534 3.142 -24.519 1 34.48 ? C01 X9H 1101 A 1 HETATM 2 C C02 X9H . . . B 2 50.677 2.914 -22.936 1 37.59 ? C02 X9H 1101 A 1 HETATM 3 C C03 X9H . . . B 2 49.717 3.357 -22.04 1 55.77 ? C03 X9H 1101 A 1 HETATM 4 C C04 X9H . . . B 2 50.032 3.557 -20.527 1 30.78 ? C04 X9H 1101 A 1 HETATM 5 C C06 X9H . . . B 2 50.028 5.981 -19.68 1 56.72 ? C06 X9H 1101 A 1 HETATM 6 C C07 X9H . . . B 2 50.649 7.341 -19.351 1 71.97 ? C07 X9H 1101 A 1 HETATM 7 C C08 X9H . . . B 2 51.973 7.592 -19.442 1 70.82 ? C08 X9H 1101 A 1 HETATM 8 C C10 X9H . . . B 2 50.92 2.285 -20.028 1 39.21 ? C10 X9H 1101 A 1 HETATM 9 C C12 X9H . . . B 2 51.717 1.801 -22.518 1 33.76 ? C12 X9H 1101 A 1 HETATM 10 C C13 X9H . . . B 2 52.651 0.934 -23.175 1 38.19 ? C13 X9H 1101 A 1 HETATM 11 C C14 X9H . . . B 2 52.953 0.816 -24.688 1 40.92 ? C14 X9H 1101 A 1 HETATM 12 C C15 X9H . . . B 2 52.691 -0.354 -25.415 1 38.97 ? C15 X9H 1101 A 1 HETATM 13 C C16 X9H . . . B 2 52.953 -0.516 -26.846 1 43.82 ? C16 X9H 1101 A 1 HETATM 14 C C17 X9H . . . B 2 52.671 -1.759 -27.581 1 52.1 ? C17 X9H 1101 A 1 HETATM 15 C C18 X9H . . . B 2 52.944 -1.878 -28.943 1 61.55 ? C18 X9H 1101 A 1 HETATM 16 C C19 X9H . . . B 2 53.515 -0.748 -29.672 1 40.26 ? C19 X9H 1101 A 1 HETATM 17 C C20 X9H . . . B 2 53.792 0.446 -29.001 1 34.63 ? C20 X9H 1101 A 1 HETATM 18 C C21 X9H . . . B 2 53.518 0.607 -27.542 1 46.77 ? C21 X9H 1101 A 1 HETATM 19 C C23 X9H . . . B 2 53.534 1.923 -25.484 1 37.27 ? C23 X9H 1101 A 1 HETATM 20 C C24 X9H . . . B 2 53.327 0.093 -22.139 1 34.53 ? C24 X9H 1101 A 1 HETATM 21 C C25 X9H . . . B 2 54.369 -0.979 -22.143 1 42.7 ? C25 X9H 1101 A 1 HETATM 22 C C28 X9H . . . B 2 54.152 -1.08 -19.745 1 36.45 ? C28 X9H 1101 A 1 HETATM 23 C C30 X9H . . . B 2 52.779 0.487 -20.866 1 31.24 ? C30 X9H 1101 A 1 HETATM 24 N N05 X9H . . . B 2 50.739 4.854 -20.232 1 38.97 ? N05 X9H 1101 A 1 HETATM 25 N N11 X9H . . . B 2 51.795 1.534 -21.083 1 40 ? N11 X9H 1101 A 1 HETATM 26 N N22 X9H . . . B 2 53.792 1.827 -26.81 1 44.24 ? N22 X9H 1101 A 1 HETATM 27 N N26 X9H . . . B 2 54.978 -1.435 -23.36 1 41.68 ? N26 X9H 1101 A 1 HETATM 28 N N27 X9H . . . B 2 54.753 -1.541 -20.923 1 42.47 ? N27 X9H 1101 A 1 HETATM 29 N N29 X9H . . . B 2 53.197 -0.106 -19.66 1 32.67 ? N29 X9H 1101 A 1 HETATM 30 O O09 X9H . . . B 2 48.826 5.894 -19.433 1 97.43 ? O09 X9H 1101 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #