data_8F1V # _model_server_result.job_id KuZDr_LPO10t60my_Lzvmg _model_server_result.datetime_utc '2024-10-12 12:23:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f1v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 8F1V # _exptl.entry_id 8F1V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 354.408 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4,4'-(1H-benzimidazole-2,6-diyl)di(benzene-1-carboximidamide)" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8F1V _cell.length_a 25.03 _cell.length_b 41.458 _cell.length_c 64.004 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F1V _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D MG MG . B MG 102 1_555 E O HOH . B HOH 207 3_645 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? hydrog WATSON-CRICK hydrog1 A N3 DC 1 B DC 1 1_555 B N1 DG 12 C DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 B DC 1 1_555 B O6 DG 12 C DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 B DC 1 1_555 B N2 DG 12 C DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DG 2 B DG 2 1_555 B N3 DC 11 C DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 DG 2 B DG 2 1_555 B O2 DC 11 C DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 DG 2 B DG 2 1_555 B N4 DC 11 C DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DC 3 B DC 3 1_555 B N1 DG 10 C DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N4 DC 3 B DC 3 1_555 B O6 DG 10 C DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O2 DC 3 B DC 3 1_555 B N2 DG 10 C DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 DA 4 B DA 4 1_555 B N3 DT 9 C DT 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N6 DA 4 B DA 4 1_555 B O4 DT 9 C DT 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N1 DA 5 B DA 5 1_555 B N3 DT 8 C DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N6 DA 5 B DA 5 1_555 B O4 DT 8 C DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N1 DA 6 B DA 6 1_555 B N3 DT 7 C DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N6 DA 6 B DA 6 1_555 B O4 DT 7 C DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N1 DA 7 B DA 7 1_555 B N3 DT 6 C DT 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N6 DA 7 B DA 7 1_555 B O4 DT 6 C DT 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N1 DA 8 B DA 8 1_555 B N3 DT 5 C DT 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N6 DA 8 B DA 8 1_555 B O4 DT 5 C DT 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N1 DA 9 B DA 9 1_555 B N3 DT 4 C DT 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N6 DA 9 B DA 9 1_555 B O4 DT 4 C DT 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N1 DG 10 B DG 10 1_555 B N3 DC 3 C DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N2 DG 10 B DG 10 1_555 B O2 DC 3 C DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A O6 DG 10 B DG 10 1_555 B N4 DC 3 C DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N3 DC 11 B DC 11 1_555 B N1 DG 2 C DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N4 DC 11 B DC 11 1_555 B O6 DG 2 C DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A O2 DC 11 B DC 11 1_555 B N2 DG 2 C DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N1 DG 12 B DG 12 1_555 B N3 DC 1 C DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A N2 DG 12 B DG 12 1_555 B O2 DC 1 C DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A O6 DG 12 B DG 12 1_555 B N4 DC 1 C DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C21 H18 N6' _chem_comp.formula_weight 354.408 _chem_comp.id WFB _chem_comp.mon_nstd_flag . _chem_comp.name "4,4'-(1H-benzimidazole-2,6-diyl)di(benzene-1-carboximidamide)" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C1 WFB doub 152 n n N1 C1 WFB sing 153 n n C1 C2 WFB sing 154 n n C2 C21 WFB doub 155 n y C2 C3 WFB sing 156 n y C21 C20 WFB sing 157 n y C3 C4 WFB doub 158 n y C20 C5 WFB doub 159 n y C4 C5 WFB sing 160 n y C5 C6 WFB sing 161 n n C6 C7 WFB doub 162 n y C6 C19 WFB sing 163 n y C7 C8 WFB sing 164 n y C19 C18 WFB doub 165 n y C8 C9 WFB doub 166 n y C18 C9 WFB sing 167 n y C18 N6 WFB sing 168 n y C9 N3 WFB sing 169 n y N6 C10 WFB sing 170 n y N3 C10 WFB doub 171 n y C10 C11 WFB sing 172 n n C11 C17 WFB doub 173 n y C11 C12 WFB sing 174 n y C17 C16 WFB sing 175 n y C12 C13 WFB doub 176 n y C16 C14 WFB doub 177 n y C13 C14 WFB sing 178 n y C14 C15 WFB sing 179 n n C15 N5 WFB doub 180 n n C15 N4 WFB sing 181 n n C4 H6 WFB sing 182 n n C7 H7 WFB sing 183 n n C8 H8 WFB sing 184 n n C12 H9 WFB sing 185 n n C13 H10 WFB sing 186 n n N1 H1 WFB sing 187 n n N1 H2 WFB sing 188 n n N2 H4 WFB sing 189 n n C3 H5 WFB sing 190 n n C16 H15 WFB sing 191 n n C17 H16 WFB sing 192 n n C19 H18 WFB sing 193 n n C20 H19 WFB sing 194 n n C21 H20 WFB sing 195 n n N4 H11 WFB sing 196 n n N4 H12 WFB sing 197 n n N5 H13 WFB sing 198 n n N6 H17 WFB sing 199 n n # _atom_sites.entry_id 8F1V _atom_sites.fract_transf_matrix[1][1] 0.039952 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024121 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015624 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 WFB B 1 101 101 WFB DRG . D 4 MG B 1 102 1 MG MG . E 5 HOH B 1 201 11 HOH HOH . E 5 HOH B 2 202 20 HOH HOH . E 5 HOH B 3 203 7 HOH HOH . E 5 HOH B 4 204 5 HOH HOH . E 5 HOH B 5 205 3 HOH HOH . E 5 HOH B 6 206 2 HOH HOH . E 5 HOH B 7 207 15 HOH HOH . E 5 HOH B 8 208 17 HOH HOH . F 5 HOH C 1 101 19 HOH HOH . F 5 HOH C 2 102 9 HOH HOH . F 5 HOH C 3 103 1 HOH HOH . F 5 HOH C 4 104 6 HOH HOH . F 5 HOH C 5 105 4 HOH HOH . F 5 HOH C 6 106 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 WFB . . . C 3 9.666 22.439 9.443 1 44.99 ? C4 WFB 101 B 1 HETATM 2 C C14 WFB . . . C 3 12.014 26.808 0.262 1 47.02 ? C14 WFB 101 B 1 HETATM 3 C C5 WFB . . . C 3 8.476 22.878 8.873 1 44.74 ? C5 WFB 101 B 1 HETATM 4 C C6 WFB . . . C 3 8.485 23.694 7.636 1 44.45 ? C6 WFB 101 B 1 HETATM 5 C C11 WFB . . . C 3 10.682 26.009 2.592 1 45.75 ? C11 WFB 101 B 1 HETATM 6 C C7 WFB . . . C 3 7.384 24.51 7.286 1 45.8 ? C7 WFB 101 B 1 HETATM 7 C C8 WFB . . . C 3 7.377 25.298 6.163 1 45.31 ? C8 WFB 101 B 1 HETATM 8 C C9 WFB . . . C 3 8.501 25.286 5.338 1 45.31 ? C9 WFB 101 B 1 HETATM 9 C C10 WFB . . . C 3 9.982 25.575 3.803 1 46.28 ? C10 WFB 101 B 1 HETATM 10 C C12 WFB . . . C 3 11.777 25.291 2.121 1 44.78 ? C12 WFB 101 B 1 HETATM 11 C C13 WFB . . . C 3 12.43 25.68 0.965 1 46.94 ? C13 WFB 101 B 1 HETATM 12 N N1 WFB . . . C 3 9.633 20.435 13.168 1 45.82 ? N1 WFB 101 B 1 HETATM 13 N N2 WFB . . . C 3 7.418 19.998 12.933 1 47.49 ? N2 WFB 101 B 1 HETATM 14 C C3 WFB . . . C 3 9.671 21.703 10.608 1 45.71 ? C3 WFB 101 B 1 HETATM 15 N N3 WFB . . . C 3 8.761 25.962 4.152 1 46.13 ? N3 WFB 101 B 1 HETATM 16 C C1 WFB . . . C 3 8.507 20.578 12.496 1 45.99 ? C1 WFB 101 B 1 HETATM 17 C C15 WFB . . . C 3 12.713 27.22 -0.987 1 49.57 ? C15 WFB 101 B 1 HETATM 18 C C16 WFB . . . C 3 10.904 27.509 0.72 1 46.7 ? C16 WFB 101 B 1 HETATM 19 C C17 WFB . . . C 3 10.246 27.115 1.871 1 46.94 ? C17 WFB 101 B 1 HETATM 20 C C18 WFB . . . C 3 9.596 24.489 5.676 1 45.04 ? C18 WFB 101 B 1 HETATM 21 C C19 WFB . . . C 3 9.604 23.705 6.808 1 45.01 ? C19 WFB 101 B 1 HETATM 22 C C2 WFB . . . C 3 8.484 21.367 11.24 1 45.65 ? C2 WFB 101 B 1 HETATM 23 C C20 WFB . . . C 3 7.289 22.551 9.522 1 45.36 ? C20 WFB 101 B 1 HETATM 24 C C21 WFB . . . C 3 7.288 21.802 10.681 1 45.99 ? C21 WFB 101 B 1 HETATM 25 N N4 WFB . . . C 3 13.305 26.307 -1.742 1 46.77 ? N4 WFB 101 B 1 HETATM 26 N N5 WFB . . . C 3 12.782 28.489 -1.32 1 47.47 ? N5 WFB 101 B 1 HETATM 27 N N6 WFB . . . C 3 10.526 24.693 4.68 1 45.76 ? N6 WFB 101 B 1 HETATM 28 H H6 WFB . . . C 3 10.485 22.65 9.025 1 55.04 ? H6 WFB 101 B 1 HETATM 29 H H7 WFB . . . C 3 6.624 24.513 7.846 1 56.01 ? H7 WFB 101 B 1 HETATM 30 H H8 WFB . . . C 3 6.633 25.834 5.954 1 55.42 ? H8 WFB 101 B 1 HETATM 31 H H9 WFB . . . C 3 12.075 24.534 2.592 1 54.78 ? H9 WFB 101 B 1 HETATM 32 H H10 WFB . . . C 3 13.16 25.176 0.653 1 57.37 ? H10 WFB 101 B 1 HETATM 33 H H1 WFB . . . C 3 10.375 20.825 12.879 1 56.04 ? H1 WFB 101 B 1 HETATM 34 H H2 WFB . . . C 3 9.65 19.949 13.909 1 56.04 ? H2 WFB 101 B 1 HETATM 35 H H4 WFB . . . C 3 6.663 20.088 12.492 1 58.04 ? H4 WFB 101 B 1 HETATM 36 H H5 WFB . . . C 3 10.492 21.425 10.976 1 55.9 ? H5 WFB 101 B 1 HETATM 37 H H15 WFB . . . C 3 10.595 28.26 0.245 1 57.09 ? H15 WFB 101 B 1 HETATM 38 H H16 WFB . . . C 3 9.496 27.599 2.168 1 57.38 ? H16 WFB 101 B 1 HETATM 39 H H18 WFB . . . C 3 10.35 23.182 7.025 1 55.06 ? H18 WFB 101 B 1 HETATM 40 H H19 WFB . . . C 3 6.468 22.847 9.162 1 55.48 ? H19 WFB 101 B 1 HETATM 41 H H20 WFB . . . C 3 6.471 21.585 11.094 1 56.24 ? H20 WFB 101 B 1 HETATM 42 H H11 WFB . . . C 3 13.746 26.552 -2.471 1 57.17 ? H11 WFB 101 B 1 HETATM 43 H H12 WFB . . . C 3 13.261 25.45 -1.52 1 57.17 ? H12 WFB 101 B 1 HETATM 44 H H13 WFB . . . C 3 13.219 28.732 -2.042 1 58.01 ? H13 WFB 101 B 1 HETATM 45 H H17 WFB . . . C 3 11.318 24.323 4.626 1 55.96 ? H17 WFB 101 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 45 #