data_8F2C # _model_server_result.job_id yScdFxm2OJXoRFHGtnkJPw _model_server_result.datetime_utc '2024-11-14 21:01:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f2c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8F2C # _exptl.entry_id 8F2C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 587.632 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,2S,5S)-N-[(2S,3R)-4-(azetidin-1-yl)-3-hydroxy-4-oxo-1-(2-oxopyrrolidin-1-yl)butan-2-yl]-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8F2C _cell.length_a 45.576 _cell.length_b 63.846 _cell.length_c 104.384 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F2C _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C18 _struct_conn.ptnr2_label_comp_id X9Z _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id X9Z _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.924 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C27 H40 F3 N5 O6' _chem_comp.formula_weight 587.632 _chem_comp.id X9Z _chem_comp.mon_nstd_flag . _chem_comp.name (1R,2S,5S)-N-[(2S,3R)-4-(azetidin-1-yl)-3-hydroxy-4-oxo-1-(2-oxopyrrolidin-1-yl)butan-2-yl]-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F1 C16 X9Z sing 376 n n F3 C16 X9Z sing 377 n n C16 F2 X9Z sing 378 n n C16 C15 X9Z sing 379 n n C14 C11 X9Z sing 380 n n C15 O2 X9Z doub 381 n n C15 N2 X9Z sing 382 n n C13 C11 X9Z sing 383 n n N2 C10 X9Z sing 384 n n C11 C10 X9Z sing 385 n n C11 C12 X9Z sing 386 n n C10 C9 X9Z sing 387 n n C26 C25 X9Z sing 388 n n C26 C27 X9Z sing 389 n n O3 C9 X9Z doub 390 n n C9 N1 X9Z sing 391 n n C25 C24 X9Z sing 392 n n C27 O6 X9Z doub 393 n n C27 N5 X9Z sing 394 n n N1 C8 X9Z sing 395 n n N1 C2 X9Z sing 396 n n C8 C4 X9Z sing 397 n n C24 N5 X9Z sing 398 n n N5 C23 X9Z sing 399 n n C6 C5 X9Z sing 400 n n C2 C1 X9Z sing 401 n n C2 C3 X9Z sing 402 n n O1 C1 X9Z doub 403 n n C4 C5 X9Z sing 404 n n C4 C3 X9Z sing 405 n n C1 N3 X9Z sing 406 n n C5 C3 X9Z sing 407 n n C5 C7 X9Z sing 408 n n N3 C17 X9Z sing 409 n n C23 C17 X9Z sing 410 n n C17 C18 X9Z sing 411 n n C18 O4 X9Z sing 412 n n C18 C19 X9Z sing 413 n n O5 C19 X9Z doub 414 n n C19 N4 X9Z sing 415 n n N4 C22 X9Z sing 416 n n N4 C20 X9Z sing 417 n n C22 C21 X9Z sing 418 n n C21 C20 X9Z sing 419 n n N3 H1 X9Z sing 420 n n C4 H2 X9Z sing 421 n n C6 H3 X9Z sing 422 n n C6 H4 X9Z sing 423 n n C6 H5 X9Z sing 424 n n C7 H6 X9Z sing 425 n n C7 H7 X9Z sing 426 n n C7 H8 X9Z sing 427 n n C8 H9 X9Z sing 428 n n C8 H10 X9Z sing 429 n n C10 H11 X9Z sing 430 n n C13 H12 X9Z sing 431 n n C13 H13 X9Z sing 432 n n C13 H14 X9Z sing 433 n n C17 H15 X9Z sing 434 n n C20 H16 X9Z sing 435 n n C20 H17 X9Z sing 436 n n C21 H18 X9Z sing 437 n n C21 H19 X9Z sing 438 n n C22 H20 X9Z sing 439 n n C22 H21 X9Z sing 440 n n C24 H22 X9Z sing 441 n n C24 H23 X9Z sing 442 n n C26 H24 X9Z sing 443 n n C26 H25 X9Z sing 444 n n C2 H26 X9Z sing 445 n n N2 H27 X9Z sing 446 n n C3 H28 X9Z sing 447 n n O4 H29 X9Z sing 448 n n C12 H30 X9Z sing 449 n n C12 H31 X9Z sing 450 n n C12 H32 X9Z sing 451 n n C14 H33 X9Z sing 452 n n C14 H34 X9Z sing 453 n n C14 H35 X9Z sing 454 n n C18 H36 X9Z sing 455 n n C23 H37 X9Z sing 456 n n C23 H38 X9Z sing 457 n n C25 H39 X9Z sing 458 n n C25 H40 X9Z sing 459 n n # _atom_sites.entry_id 8F2C _atom_sites.fract_transf_matrix[1][1] 0.021941 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015663 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00958 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 X9Z A 1 401 401 X9Z LIG . C 3 CL A 1 402 1 CL CL . D 4 HOH A 1 501 48 HOH HOH . D 4 HOH A 2 502 33 HOH HOH . D 4 HOH A 3 503 50 HOH HOH . D 4 HOH A 4 504 88 HOH HOH . D 4 HOH A 5 505 2 HOH HOH . D 4 HOH A 6 506 75 HOH HOH . D 4 HOH A 7 507 70 HOH HOH . D 4 HOH A 8 508 53 HOH HOH . D 4 HOH A 9 509 94 HOH HOH . D 4 HOH A 10 510 55 HOH HOH . D 4 HOH A 11 511 79 HOH HOH . D 4 HOH A 12 512 23 HOH HOH . D 4 HOH A 13 513 85 HOH HOH . D 4 HOH A 14 514 47 HOH HOH . D 4 HOH A 15 515 31 HOH HOH . D 4 HOH A 16 516 5 HOH HOH . D 4 HOH A 17 517 78 HOH HOH . D 4 HOH A 18 518 34 HOH HOH . D 4 HOH A 19 519 26 HOH HOH . D 4 HOH A 20 520 42 HOH HOH . D 4 HOH A 21 521 1 HOH HOH . D 4 HOH A 22 522 51 HOH HOH . D 4 HOH A 23 523 3 HOH HOH . D 4 HOH A 24 524 27 HOH HOH . D 4 HOH A 25 525 10 HOH HOH . D 4 HOH A 26 526 38 HOH HOH . D 4 HOH A 27 527 35 HOH HOH . D 4 HOH A 28 528 22 HOH HOH . D 4 HOH A 29 529 54 HOH HOH . D 4 HOH A 30 530 29 HOH HOH . D 4 HOH A 31 531 76 HOH HOH . D 4 HOH A 32 532 43 HOH HOH . D 4 HOH A 33 533 14 HOH HOH . D 4 HOH A 34 534 17 HOH HOH . D 4 HOH A 35 535 28 HOH HOH . D 4 HOH A 36 536 11 HOH HOH . D 4 HOH A 37 537 52 HOH HOH . D 4 HOH A 38 538 39 HOH HOH . D 4 HOH A 39 539 9 HOH HOH . D 4 HOH A 40 540 18 HOH HOH . D 4 HOH A 41 541 80 HOH HOH . D 4 HOH A 42 542 20 HOH HOH . D 4 HOH A 43 543 77 HOH HOH . D 4 HOH A 44 544 21 HOH HOH . D 4 HOH A 45 545 13 HOH HOH . D 4 HOH A 46 546 63 HOH HOH . D 4 HOH A 47 547 7 HOH HOH . D 4 HOH A 48 548 16 HOH HOH . D 4 HOH A 49 549 87 HOH HOH . D 4 HOH A 50 550 24 HOH HOH . D 4 HOH A 51 551 32 HOH HOH . D 4 HOH A 52 552 12 HOH HOH . D 4 HOH A 53 553 71 HOH HOH . D 4 HOH A 54 554 44 HOH HOH . D 4 HOH A 55 555 83 HOH HOH . D 4 HOH A 56 556 15 HOH HOH . D 4 HOH A 57 557 19 HOH HOH . D 4 HOH A 58 558 72 HOH HOH . D 4 HOH A 59 559 46 HOH HOH . D 4 HOH A 60 560 56 HOH HOH . D 4 HOH A 61 561 30 HOH HOH . D 4 HOH A 62 562 49 HOH HOH . D 4 HOH A 63 563 4 HOH HOH . D 4 HOH A 64 564 41 HOH HOH . D 4 HOH A 65 565 60 HOH HOH . D 4 HOH A 66 566 6 HOH HOH . D 4 HOH A 67 567 74 HOH HOH . D 4 HOH A 68 568 73 HOH HOH . D 4 HOH A 69 569 84 HOH HOH . D 4 HOH A 70 570 67 HOH HOH . D 4 HOH A 71 571 69 HOH HOH . D 4 HOH A 72 572 57 HOH HOH . D 4 HOH A 73 573 96 HOH HOH . D 4 HOH A 74 574 8 HOH HOH . D 4 HOH A 75 575 61 HOH HOH . D 4 HOH A 76 576 45 HOH HOH . D 4 HOH A 77 577 58 HOH HOH . D 4 HOH A 78 578 86 HOH HOH . D 4 HOH A 79 579 92 HOH HOH . D 4 HOH A 80 580 90 HOH HOH . D 4 HOH A 81 581 93 HOH HOH . D 4 HOH A 82 582 36 HOH HOH . D 4 HOH A 83 583 65 HOH HOH . D 4 HOH A 84 584 25 HOH HOH . D 4 HOH A 85 585 37 HOH HOH . D 4 HOH A 86 586 62 HOH HOH . D 4 HOH A 87 587 81 HOH HOH . D 4 HOH A 88 588 89 HOH HOH . D 4 HOH A 89 589 59 HOH HOH . D 4 HOH A 90 590 64 HOH HOH . D 4 HOH A 91 591 91 HOH HOH . D 4 HOH A 92 592 82 HOH HOH . D 4 HOH A 93 593 40 HOH HOH . D 4 HOH A 94 594 66 HOH HOH . D 4 HOH A 95 595 95 HOH HOH . D 4 HOH A 96 596 68 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 X9Z . . . B 2 -19.496 15.762 -27.097 1 40.91 ? N1 X9Z 401 A 1 HETATM 2 N N3 X9Z . . . B 2 -17.96 13.409 -24.968 1 38.27 ? N3 X9Z 401 A 1 HETATM 3 C C4 X9Z . . . B 2 -20.606 17.121 -25.517 1 41.39 ? C4 X9Z 401 A 1 HETATM 4 C C5 X9Z . . . B 2 -19.42 17.913 -25.03 1 39.99 ? C5 X9Z 401 A 1 HETATM 5 C C6 X9Z . . . B 2 -18.575 18.575 -26.096 1 39.57 ? C6 X9Z 401 A 1 HETATM 6 C C7 X9Z . . . B 2 -19.591 18.742 -23.769 1 39.76 ? C7 X9Z 401 A 1 HETATM 7 C C8 X9Z . . . B 2 -20.654 16.66 -26.952 1 41.25 ? C8 X9Z 401 A 1 HETATM 8 C C10 X9Z . . . B 2 -19.86 15.482 -29.486 1 43.24 ? C10 X9Z 401 A 1 HETATM 9 C C13 X9Z . . . B 2 -19.449 13.15 -30.542 1 39.84 ? C13 X9Z 401 A 1 HETATM 10 C C15 X9Z . . . B 2 -19.402 17.362 -30.96 1 50.75 ? C15 X9Z 401 A 1 HETATM 11 C C17 X9Z . . . B 2 -18.075 12.128 -24.254 1 40.26 ? C17 X9Z 401 A 1 HETATM 12 C C20 X9Z . . . B 2 -19.984 10.312 -20.149 1 48.58 ? C20 X9Z 401 A 1 HETATM 13 C C21 X9Z . . . B 2 -21.303 11.09 -20.241 1 48.53 ? C21 X9Z 401 A 1 HETATM 14 C C22 X9Z . . . B 2 -20.479 12.276 -20.768 1 50.57 ? C22 X9Z 401 A 1 HETATM 15 C C24 X9Z . . . B 2 -18.722 10.303 -26.665 1 43.92 ? C24 X9Z 401 A 1 HETATM 16 C C26 X9Z . . . B 2 -17.09 9.987 -28.389 1 42.85 ? C26 X9Z 401 A 1 HETATM 17 C C1 X9Z . . . B 2 -19.008 14.046 -25.495 1 40.1 ? C1 X9Z 401 A 1 HETATM 18 O O1 X9Z . . . B 2 -20.11 13.546 -25.69 1 41.46 ? O1 X9Z 401 A 1 HETATM 19 C C2 X9Z . . . B 2 -18.805 15.497 -25.851 1 41.84 ? C2 X9Z 401 A 1 HETATM 20 N N2 X9Z . . . B 2 -19.006 16.226 -30.408 1 45.91 ? N2 X9Z 401 A 1 HETATM 21 O O2 X9Z . . . B 2 -20.442 17.946 -30.729 1 50.28 ? O2 X9Z 401 A 1 HETATM 22 C C3 X9Z . . . B 2 -19.46 16.422 -24.839 1 39.3 ? C3 X9Z 401 A 1 HETATM 23 O O3 X9Z . . . B 2 -17.976 14.625 -28.279 1 34.64 ? O3 X9Z 401 A 1 HETATM 24 N N4 X9Z . . . B 2 -19.425 11.308 -21.063 1 51.17 ? N4 X9Z 401 A 1 HETATM 25 O O4 X9Z . . . B 2 -18.793 13.521 -22.441 1 42.59 ? O4 X9Z 401 A 1 HETATM 26 N N5 X9Z . . . B 2 -17.398 10.729 -26.217 1 42.31 ? N5 X9Z 401 A 1 HETATM 27 O O5 X9Z . . . B 2 -17.827 10.155 -22.024 1 43.82 ? O5 X9Z 401 A 1 HETATM 28 O O6 X9Z . . . B 2 -15.326 11.127 -27.107 1 45.98 ? O6 X9Z 401 A 1 HETATM 29 C C9 X9Z . . . B 2 -19.034 15.229 -28.229 1 40.56 ? C9 X9Z 401 A 1 HETATM 30 C C11 X9Z . . . B 2 -20.475 14.212 -30.121 1 42.64 ? C11 X9Z 401 A 1 HETATM 31 C C12 X9Z . . . B 2 -21.441 13.642 -29.083 1 43.73 ? C12 X9Z 401 A 1 HETATM 32 C C14 X9Z . . . B 2 -21.271 14.654 -31.356 1 45.29 ? C14 X9Z 401 A 1 HETATM 33 C C16 X9Z . . . B 2 -18.427 17.978 -31.965 1 57.18 ? C16 X9Z 401 A 1 HETATM 34 C C18 X9Z . . . B 2 -17.917 12.431 -22.744 1 45.75 ? C18 X9Z 401 A 1 HETATM 35 C C19 X9Z . . . B 2 -18.387 11.226 -21.891 1 47.52 ? C19 X9Z 401 A 1 HETATM 36 C C23 X9Z . . . B 2 -17.101 11.093 -24.832 1 41.42 ? C23 X9Z 401 A 1 HETATM 37 C C25 X9Z . . . B 2 -18.449 9.555 -27.95 1 40.53 ? C25 X9Z 401 A 1 HETATM 38 C C27 X9Z . . . B 2 -16.474 10.677 -27.187 1 48.03 ? C27 X9Z 401 A 1 HETATM 39 F F1 X9Z . . . B 2 -18.906 18.038 -33.222 1 66.53 ? F1 X9Z 401 A 1 HETATM 40 F F2 X9Z . . . B 2 -18.037 19.158 -31.5 1 61.57 ? F2 X9Z 401 A 1 HETATM 41 F F3 X9Z . . . B 2 -17.309 17.29 -32.021 1 62.08 ? F3 X9Z 401 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 363 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 41 #