data_8F2K
#
_model_server_result.job_id            5GVRGi-UYfS_EezAJlQhkA 
_model_server_result.datetime_utc      '2024-11-30 11:29:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8f2k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":501}' 
#
_entry.id    8F2K 
#
_exptl.entry_id    8F2K 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8F2K 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8F2K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 J N N 
? 4 L N N 
? 4 N N N 
? 4 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 153 A THR 178 1_555 I MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc2 H O1G ATP . A ATP 600 1_555 I MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
metalc ? metalc3 H O2B ATP . A ATP 600 1_555 I MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
metalc ? metalc4 B OG1 THR 153 B THR 178 1_555 K MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
metalc ? metalc5 J O2G ATP . B ATP 600 1_555 K MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
metalc ? metalc6 J O1B ATP . B ATP 600 1_555 K MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
metalc ? metalc7 C OG1 THR 153 C THR 178 1_555 M MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc8 L O3G ATP . C ATP 600 1_555 M MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? 
metalc ? metalc9 L O1B ATP . C ATP 600 1_555 M MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
metalc ? metalc10 E OG1 THR 157 E THR 164 1_555 O MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc11 N O1G ATP . E ATP 501 1_555 O MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? 
metalc ? metalc12 N O2B ATP . E ATP 501 1_555 O MG MG . E MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
metalc ? metalc13 F OG1 THR 157 F THR 164 1_555 R MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
metalc ? metalc14 Q O2G ATP . F ATP 501 1_555 R MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc15 Q O2B ATP . F ATP 501 1_555 R MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     8F2K 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 4 ATP A 1 600 600 ATP ATP . 
I 5 MG A 1 601 601 MG MG . 
J 4 ATP B 1 600 600 ATP ATP . 
K 5 MG B 1 601 601 MG MG . 
L 4 ATP C 1 600 600 ATP ATP . 
M 5 MG C 1 601 601 MG MG . 
N 4 ATP E 1 501 600 ATP ATP . 
O 5 MG E 1 502 601 MG MG . 
P 6 XBC E 1 503 1 XBC LIG . 
Q 4 ATP F 1 501 600 ATP ATP . 
R 5 MG F 1 502 601 MG MG . 
S 6 XBC F 1 503 1 XBC LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . Q 4 142.287 173.394 129.082 1 76.79 ? PG ATP 501 F 1 
HETATM 2 O O1G ATP . . . Q 4 143.735 173.315 128.747 1 63.96 ? O1G ATP 501 F 1 
HETATM 3 O O2G ATP . . . Q 4 141.531 174.446 128.275 1 67.68 ? O2G ATP 501 F 1 
HETATM 4 O O3G ATP . . . Q 4 141.553 172.059 128.972 1 70.75 ? O3G ATP 501 F 1 
HETATM 5 P PB ATP . . . Q 4 142.054 175.144 131.473 1 69.09 ? PB ATP 501 F 1 
HETATM 6 O O1B ATP . . . Q 4 143.378 175.458 132.037 1 69.25 ? O1B ATP 501 F 1 
HETATM 7 O O2B ATP . . . Q 4 141.43 176.235 130.608 1 68.41 ? O2B ATP 501 F 1 
HETATM 8 O O3B ATP . . . Q 4 142.085 173.835 130.595 1 58.7 ? O3B ATP 501 F 1 
HETATM 9 P PA ATP . . . Q 4 139.493 175.162 132.933 1 55.9 ? PA ATP 501 F 1 
HETATM 10 O O1A ATP . . . Q 4 138.564 174.775 131.853 1 62.81 ? O1A ATP 501 F 1 
HETATM 11 O O2A ATP . . . Q 4 139.49 176.644 133.28 1 71.05 ? O2A ATP 501 F 1 
HETATM 12 O O3A ATP . . . Q 4 140.985 174.767 132.59 1 60.17 ? O3A ATP 501 F 1 
HETATM 13 O O5' ATP . . . Q 4 139.189 174.357 134.255 1 61.35 ? O5' ATP 501 F 1 
HETATM 14 C C5' ATP . . . Q 4 139.216 172.915 134.277 1 62.51 ? C5' ATP 501 F 1 
HETATM 15 C C4' ATP . . . Q 4 138.487 172.425 135.499 1 61.89 ? C4' ATP 501 F 1 
HETATM 16 O O4' ATP . . . Q 4 139.275 172.804 136.643 1 61.79 ? O4' ATP 501 F 1 
HETATM 17 C C3' ATP . . . Q 4 137.207 173.209 135.728 1 61.53 ? C3' ATP 501 F 1 
HETATM 18 O O3' ATP . . . Q 4 136.181 172.48 135.068 1 68.42 ? O3' ATP 501 F 1 
HETATM 19 C C2' ATP . . . Q 4 136.994 172.987 137.22 1 60.9 ? C2' ATP 501 F 1 
HETATM 20 O O2' ATP . . . Q 4 136.689 171.608 137.365 1 75.6 ? O2' ATP 501 F 1 
HETATM 21 C C1' ATP . . . Q 4 138.428 173.108 137.741 1 60.18 ? C1' ATP 501 F 1 
HETATM 22 N N9 ATP . . . Q 4 138.734 174.476 138.136 1 55.12 ? N9 ATP 501 F 1 
HETATM 23 C C8 ATP . . . Q 4 139.579 175.35 137.505 1 63.02 ? C8 ATP 501 F 1 
HETATM 24 N N7 ATP . . . Q 4 139.667 176.522 138.084 1 62.19 ? N7 ATP 501 F 1 
HETATM 25 C C5 ATP . . . Q 4 138.819 176.414 139.175 1 61.79 ? C5 ATP 501 F 1 
HETATM 26 C C6 ATP . . . Q 4 138.463 177.316 140.195 1 59.71 ? C6 ATP 501 F 1 
HETATM 27 N N6 ATP . . . Q 4 138.941 178.561 140.287 1 64.54 ? N6 ATP 501 F 1 
HETATM 28 N N1 ATP . . . Q 4 137.59 176.891 141.134 1 55.33 ? N1 ATP 501 F 1 
HETATM 29 C C2 ATP . . . Q 4 137.109 175.649 141.047 1 61.62 ? C2 ATP 501 F 1 
HETATM 30 N N3 ATP . . . Q 4 137.37 174.712 140.134 1 69.12 ? N3 ATP 501 F 1 
HETATM 31 C C4 ATP . . . Q 4 138.236 175.158 139.22 1 64.4 ? C4 ATP 501 F 1 
#
_model_server_stats.io_time_ms              57 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#