data_8F2L # _model_server_result.job_id 5jplzhWsQGN7BUgXqu0J0w _model_server_result.datetime_utc '2025-04-10 01:13:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f2l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":401}' # _entry.id 8F2L # _exptl.entry_id 8F2L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 119.119 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description L-HOMOSERINE _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8F2L _cell.length_a 161.735 _cell.length_b 161.735 _cell.length_c 249.235 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F2L _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 PISA dimeric 2 author_and_software_defined_assembly 5 PISA dimeric 2 author_and_software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,M,N 1 1 C,D,O,P 2 1 E,F,Q 3 1 G,H,R,S 4 1 I,J,T,U 5 1 K,L,V,W 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N # _chem_comp.formula 'C4 H9 N O3' _chem_comp.formula_weight 119.119 _chem_comp.id HSE _chem_comp.mon_nstd_flag n _chem_comp.name L-HOMOSERINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA HSE sing 150 n n N H HSE sing 151 n n N H2 HSE sing 152 n n CA C HSE sing 153 n n CA C3 HSE sing 154 n n CA HA HSE sing 155 n n C O HSE doub 156 n n C OXT HSE sing 157 n n C3 C4 HSE sing 158 n n C3 H31 HSE sing 159 n n C3 H32 HSE sing 160 n n OXT HXT HSE sing 161 n n C4 O3 HSE sing 162 n n C4 H41 HSE sing 163 n n C4 H42 HSE sing 164 n n O3 HO3 HSE sing 165 n n # _atom_sites.entry_id 8F2L _atom_sites.fract_transf_matrix[1][1] 0.006183 _atom_sites.fract_transf_matrix[1][2] 0.00357 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007139 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004012 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 2 HSE B 1 401 401 HSE HSE . N 2 HSE A 1 401 401 HSE HSE . O 2 HSE C 1 401 401 HSE HSE . P 2 HSE D 1 401 401 HSE HSE . Q 2 HSE F 1 401 401 HSE HSE . R 2 HSE G 1 401 401 HSE HSE . S 2 HSE H 1 401 401 HSE HSE . T 2 HSE I 1 401 401 HSE HSE . U 2 HSE J 1 401 401 HSE HSE . V 2 HSE K 1 401 401 HSE HSE . W 2 HSE L 1 401 401 HSE HSE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N HSE . . . V 2 51.734 49.068 -24.319 1 41.16 ? N HSE 401 K 1 HETATM 2 C CA HSE . . . V 2 51.606 47.814 -25.031 1 39.74 ? CA HSE 401 K 1 HETATM 3 C C HSE . . . V 2 50.177 47.366 -24.86 1 20.31 ? C HSE 401 K 1 HETATM 4 C C3 HSE . . . V 2 52.516 46.746 -24.424 1 43.73 ? C3 HSE 401 K 1 HETATM 5 O O HSE . . . V 2 49.532 46.933 -25.833 1 31.6 ? O HSE 401 K 1 HETATM 6 O OXT HSE . . . V 2 49.784 47.508 -23.661 1 13.08 ? OXT HSE 401 K 1 HETATM 7 C C4 HSE . . . V 2 51.698 45.49 -24.145 1 52.93 ? C4 HSE 401 K 1 HETATM 8 O O3 HSE . . . V 2 52.484 44.308 -24.159 1 48.64 ? O3 HSE 401 K 1 # _model_server_stats.io_time_ms 88 _model_server_stats.parse_time_ms 53 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 8 #