data_8F2S # _model_server_result.job_id zGaNYHl1lvBzz3oW6jIMqg _model_server_result.datetime_utc '2025-02-05 18:58:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8f2s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":601}' # _entry.id 8F2S # _exptl.entry_id 8F2S _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8F2S _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8F2S _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 12 N N N ? 12 O N N ? 12 X N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 5 oligosaccharide 6 oligosaccharide 7 oligosaccharide 8 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 5 4 3 MAN BMA C1 O1 . O6 HO6 . sing 4 ? 5 5 4 MAN MAN C1 O1 . O3 HO3 . sing 5 ? 5 6 4 MAN MAN C1 O1 . O6 HO6 . sing 6 ? 5 7 3 MAN BMA C1 O1 . O3 HO3 . sing 7 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 8 ? 6 3 2 BMA NAG C1 O1 . O4 HO4 . sing 9 ? 7 2 1 NAG NAG C1 O1 . O4 HO4 . sing 10 ? 8 2 1 NAG NAG C1 O1 . O4 HO4 . sing 11 ? 8 3 2 BMA NAG C1 O1 . O4 HO4 . sing 12 ? 8 4 3 MAN BMA C1 O1 . O6 HO6 . sing 13 ? 8 5 4 MAN MAN C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n F NAG 1 F 1 NAG A 501 NAG 5 n F NAG 2 F 2 NAG A 502 NAG 5 n F BMA 3 F 3 BMA A 503 BMA 5 n F MAN 4 F 4 MAN A 504 MAN 5 n F MAN 5 F 5 MAN A 505 MAN 5 n F MAN 6 F 6 MAN A 507 MAN 5 n F MAN 7 F 7 MAN A 506 MAN 6 n G NAG 1 G 1 NAG B 601 NAG 6 n G NAG 2 G 2 NAG B 602 NAG 6 n G BMA 3 G 3 BMA B 603 BMA 7 n H NAG 1 H 1 NAG C 501 NAG 7 n H NAG 2 H 2 NAG C 502 NAG 8 n I NAG 1 I 1 NAG D 501 NAG 8 n I NAG 2 I 2 NAG D 502 NAG 8 n I BMA 3 I 3 BMA D 503 BMA 8 n I MAN 4 I 4 MAN D 504 MAN 8 n I MAN 5 I 5 MAN D 505 MAN 8 n J NAG 1 J 1 NAG E 501 NAG 8 n J NAG 2 J 2 NAG E 502 NAG 8 n J BMA 3 J 3 BMA E 503 BMA 8 n J MAN 4 J 4 MAN E 504 MAN 8 n J MAN 5 J 5 MAN E 505 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 128 A CYS 128 1_555 A SG CYS 142 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 192 A CYS 192 1_555 A SG CYS 193 A CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 B SG CYS 130 B CYS 130 1_555 B SG CYS 144 B CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 C SG CYS 128 C CYS 128 1_555 C SG CYS 142 C CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 D SG CYS 128 D CYS 128 1_555 D SG CYS 142 D CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf6 D SG CYS 192 D CYS 192 1_555 D SG CYS 193 D CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf7 E SG CYS 128 E CYS 128 1_555 E SG CYS 142 E CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 141 A ASN 141 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.59 ? covale ? covale2 B ND2 ASN 70 B ASN 70 1_555 N C1 NAG . B NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale3 B ND2 ASN 143 B ASN 143 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale4 B ND2 ASN 208 B ASN 208 1_555 O C1 NAG . B NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale5 C ND2 ASN 141 C ASN 141 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale6 D ND2 ASN 141 D ASN 141 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.51 ? covale ? covale7 E ND2 ASN 68 E ASN 68 1_555 X C1 NAG . E NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale8 E ND2 ASN 141 E ASN 141 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale9 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale10 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale11 F O6 BMA . F BMA 3 1_555 F C1 MAN . F MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale12 F O3 BMA . F BMA 3 1_555 F C1 MAN . F MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale13 F O3 MAN . F MAN 4 1_555 F C1 MAN . F MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale14 F O6 MAN . F MAN 4 1_555 F C1 MAN . F MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale15 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale16 G O4 NAG . G NAG 2 1_555 G C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale17 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale18 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale19 I O4 NAG . I NAG 2 1_555 I C1 BMA . I BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale20 I O6 BMA . I BMA 3 1_555 I C1 MAN . I MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale21 I O6 MAN . I MAN 4 1_555 I C1 MAN . I MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale22 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale23 J O4 NAG . J NAG 2 1_555 J C1 BMA . J BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale24 J O6 BMA . J BMA 3 1_555 J C1 MAN . J MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale25 J O6 MAN . J MAN 4 1_555 J C1 MAN . J MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 388 n n C1 O1 NAG sing 389 n n C1 O5 NAG sing 390 n n C1 H1 NAG sing 391 n n C2 C3 NAG sing 392 n n C2 N2 NAG sing 393 n n C2 H2 NAG sing 394 n n C3 C4 NAG sing 395 n n C3 O3 NAG sing 396 n n C3 H3 NAG sing 397 n n C4 C5 NAG sing 398 n n C4 O4 NAG sing 399 n n C4 H4 NAG sing 400 n n C5 C6 NAG sing 401 n n C5 O5 NAG sing 402 n n C5 H5 NAG sing 403 n n C6 O6 NAG sing 404 n n C6 H61 NAG sing 405 n n C6 H62 NAG sing 406 n n C7 C8 NAG sing 407 n n C7 N2 NAG sing 408 n n C7 O7 NAG doub 409 n n C8 H81 NAG sing 410 n n C8 H82 NAG sing 411 n n C8 H83 NAG sing 412 n n N2 HN2 NAG sing 413 n n O1 HO1 NAG sing 414 n n O3 HO3 NAG sing 415 n n O4 HO4 NAG sing 416 n n O6 HO6 NAG sing 417 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8F2S _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 9 RBR A 1 501 508 RBR RBR . L 10 POV A 1 502 1 POV POV . M 11 CLR A 1 503 2 CLR CLR . N 12 NAG B 1 601 604 NAG NAG . O 12 NAG B 1 602 605 NAG NAG . P 9 RBR B 1 603 606 RBR RBR . Q 13 DD9 B 1 604 607 DD9 DD9 . R 10 POV B 1 605 3 POV POV . S 10 POV B 1 606 4 POV POV . T 10 POV C 1 501 5 POV POV . U 9 RBR D 1 501 602 RBR RBR . V 11 CLR D 1 502 6 CLR CLR . W 11 CLR D 1 503 7 CLR CLR . X 12 NAG E 1 501 506 NAG NAG . Y 10 POV E 1 502 10 POV POV . Z 10 POV E 1 503 11 POV POV . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . N 12 113.477 159.854 218.108 1 104.41 ? C1 NAG 601 B 1 HETATM 2 C C2 NAG . . . N 12 113.339 158.77 219.175 1 104.41 ? C2 NAG 601 B 1 HETATM 3 C C3 NAG . . . N 12 111.907 158.715 219.693 1 104.41 ? C3 NAG 601 B 1 HETATM 4 C C4 NAG . . . N 12 111.468 160.088 220.179 1 104.41 ? C4 NAG 601 B 1 HETATM 5 C C5 NAG . . . N 12 111.66 161.114 219.068 1 104.41 ? C5 NAG 601 B 1 HETATM 6 C C6 NAG . . . N 12 111.355 162.526 219.508 1 104.41 ? C6 NAG 601 B 1 HETATM 7 C C7 NAG . . . N 12 114.832 156.825 219.08 1 104.41 ? C7 NAG 601 B 1 HETATM 8 C C8 NAG . . . N 12 115.094 155.497 218.439 1 104.41 ? C8 NAG 601 B 1 HETATM 9 N N2 NAG . . . N 12 113.743 157.473 218.658 1 104.41 ? N2 NAG 601 B 1 HETATM 10 O O3 NAG . . . N 12 111.824 157.774 220.757 1 104.41 ? O3 NAG 601 B 1 HETATM 11 O O4 NAG . . . N 12 110.098 160.057 220.56 1 104.41 ? O4 NAG 601 B 1 HETATM 12 O O5 NAG . . . N 12 113.027 161.107 218.633 1 104.41 ? O5 NAG 601 B 1 HETATM 13 O O6 NAG . . . N 12 112.54 163.212 219.888 1 104.41 ? O6 NAG 601 B 1 HETATM 14 O O7 NAG . . . N 12 115.575 157.291 219.937 1 104.41 ? O7 NAG 601 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #