data_8F30
#
_model_server_result.job_id            Q0XV6mrEHW-_umrwawd_qA 
_model_server_result.datetime_utc      '2025-07-14 10:28:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8f30 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":901}' 
#
_entry.id    8F30 
#
_exptl.entry_id    8F30 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              995.821 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl (2R,3S,4S)-5-{5-[3-([1,1'-biphenyl]-4-yl)propanoyl]-7,8-dimethyl-2,4-dioxo-1,3,4,5-tetrahydrobenzo[g]pteridin-10(2H)-yl}-2,3,4-trihydroxypentyl dihydrogen diphosphate (non-preferred name)" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8F30 
_cell.length_a            119.207 
_cell.length_b            179.758 
_cell.length_c            234.695 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8F30 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C42 H47 N9 O16 P2' 
_chem_comp.formula_weight    995.821 
_chem_comp.id                XB6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl (2R,3S,4S)-5-{5-[3-([1,1'-biphenyl]-4-yl)propanoyl]-7,8-dimethyl-2,4-dioxo-1,3,4,5-tetrahydrobenzo[g]pteridin-10(2H)-yl}-2,3,4-trihydroxypentyl dihydrogen diphosphate (non-preferred name)" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C8 C7 XB6 sing 374 n n 
O1 C9 XB6 doub 375 n n 
C7 C6 XB6 doub 376 n y 
C7 C2 XB6 sing 377 n y 
C6 C5 XB6 sing 378 n y 
C9 C10 XB6 sing 379 n n 
C9 N1 XB6 sing 380 n n 
C10 C11 XB6 sing 381 n n 
C1 C2 XB6 sing 382 n n 
C2 C3 XB6 doub 383 n y 
C5 N1 XB6 sing 384 n n 
C5 C4 XB6 doub 385 n y 
N1 C24 XB6 sing 386 n n 
O3 C27 XB6 doub 387 n n 
C11 C12 XB6 sing 388 n n 
C3 C4 XB6 sing 389 n y 
C4 N4 XB6 sing 390 n n 
C24 C27 XB6 sing 391 n n 
C24 C25 XB6 doub 392 n n 
C12 C23 XB6 doub 393 n y 
C12 C13 XB6 sing 394 n y 
C27 N3 XB6 sing 395 n n 
C23 C22 XB6 sing 396 n y 
C13 C14 XB6 doub 397 n y 
C22 C15 XB6 doub 398 n y 
N4 C25 XB6 sing 399 n n 
N4 C28 XB6 sing 400 n n 
C25 N2 XB6 sing 401 n n 
N3 C26 XB6 sing 402 n n 
C14 C15 XB6 sing 403 n y 
O4 C29 XB6 sing 404 n n 
C15 C16 XB6 sing 405 n n 
C28 C29 XB6 sing 406 n n 
C21 C16 XB6 doub 407 n y 
C21 C20 XB6 sing 408 n y 
N2 C26 XB6 sing 409 n n 
C26 O2 XB6 doub 410 n n 
C16 C17 XB6 sing 411 n y 
C29 C30 XB6 sing 412 n n 
C20 C19 XB6 doub 413 n y 
O15 C41 XB6 sing 414 n n 
C17 C18 XB6 doub 415 n y 
C30 O5 XB6 sing 416 n n 
C30 C31 XB6 sing 417 n n 
C41 C42 XB6 sing 418 n n 
C41 C35 XB6 sing 419 n n 
O12 P2 XB6 doub 420 n n 
C19 C18 XB6 sing 421 n y 
O6 C31 XB6 sing 422 n n 
C42 O16 XB6 sing 423 n n 
C42 C34 XB6 sing 424 n n 
C36 N6 XB6 doub 425 n y 
C36 N5 XB6 sing 426 n y 
C31 C32 XB6 sing 427 n n 
N6 C37 XB6 sing 428 n y 
O11 P2 XB6 sing 429 n n 
P2 O13 XB6 sing 430 n n 
P2 O10 XB6 sing 431 n n 
N5 C35 XB6 sing 432 n n 
N5 C40 XB6 sing 433 n y 
C35 O14 XB6 sing 434 n n 
C37 C40 XB6 doub 435 n y 
C37 C38 XB6 sing 436 n y 
C32 O7 XB6 sing 437 n n 
N7 C38 XB6 sing 438 n n 
C40 N9 XB6 sing 439 n y 
C33 O13 XB6 sing 440 n n 
C33 C34 XB6 sing 441 n n 
C34 O14 XB6 sing 442 n n 
C38 N8 XB6 doub 443 n y 
O7 P1 XB6 sing 444 n n 
O10 P1 XB6 sing 445 n n 
N9 C39 XB6 doub 446 n y 
N8 C39 XB6 sing 447 n y 
P1 O8 XB6 doub 448 n n 
P1 O9 XB6 sing 449 n n 
C14 H1 XB6 sing 450 n n 
C6 H2 XB6 sing 451 n n 
C11 H3 XB6 sing 452 n n 
C11 H4 XB6 sing 453 n n 
C8 H5 XB6 sing 454 n n 
C8 H6 XB6 sing 455 n n 
C8 H7 XB6 sing 456 n n 
C10 H8 XB6 sing 457 n n 
C10 H9 XB6 sing 458 n n 
C13 H10 XB6 sing 459 n n 
N2 H11 XB6 sing 460 n n 
C3 H12 XB6 sing 461 n n 
N3 H13 XB6 sing 462 n n 
C1 H14 XB6 sing 463 n n 
C1 H15 XB6 sing 464 n n 
C1 H16 XB6 sing 465 n n 
C17 H17 XB6 sing 466 n n 
C18 H18 XB6 sing 467 n n 
C19 H19 XB6 sing 468 n n 
C20 H20 XB6 sing 469 n n 
C21 H21 XB6 sing 470 n n 
C22 H22 XB6 sing 471 n n 
C23 H23 XB6 sing 472 n n 
C28 H24 XB6 sing 473 n n 
C28 H25 XB6 sing 474 n n 
C29 H26 XB6 sing 475 n n 
C30 H27 XB6 sing 476 n n 
C31 H28 XB6 sing 477 n n 
C32 H29 XB6 sing 478 n n 
C32 H30 XB6 sing 479 n n 
C33 H31 XB6 sing 480 n n 
C33 H32 XB6 sing 481 n n 
C34 H33 XB6 sing 482 n n 
C35 H34 XB6 sing 483 n n 
C36 H35 XB6 sing 484 n n 
C39 H36 XB6 sing 485 n n 
C41 H37 XB6 sing 486 n n 
C42 H38 XB6 sing 487 n n 
N7 H39 XB6 sing 488 n n 
N7 H40 XB6 sing 489 n n 
O11 H41 XB6 sing 490 n n 
O15 H42 XB6 sing 491 n n 
O16 H43 XB6 sing 492 n n 
O4 H44 XB6 sing 493 n n 
O5 H45 XB6 sing 494 n n 
O6 H46 XB6 sing 495 n n 
O9 H47 XB6 sing 496 n n 
#
_atom_sites.entry_id                     8F30 
_atom_sites.fract_transf_matrix[1][1]    0.008389 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005563 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004261 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          C 
_pdbx_nonpoly_scheme.entity_id        3 
_pdbx_nonpoly_scheme.mon_id           XB6 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      901 
_pdbx_nonpoly_scheme.auth_seq_num     901 
_pdbx_nonpoly_scheme.pdb_mon_id       XB6 
_pdbx_nonpoly_scheme.auth_mon_id      DRG 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 XB6 . . . C 3 -6.843 60.23 83.15 1 83.3 ? C4 XB6 901 A 1 
HETATM 2 C C14 XB6 . . . C 3 -4.526 54.023 85.255 1 102.3 ? C14 XB6 901 A 1 
HETATM 3 C C5 XB6 . . . C 3 -7.357 59.544 82.062 1 83.91 ? C5 XB6 901 A 1 
HETATM 4 C C6 XB6 . . . C 3 -7.282 60.08 80.79 1 81.74 ? C6 XB6 901 A 1 
HETATM 5 C C11 XB6 . . . C 3 -6.047 56.374 82.712 1 84.9 ? C11 XB6 901 A 1 
HETATM 6 C C7 XB6 . . . C 3 -6.735 61.309 80.593 1 86.98 ? C7 XB6 901 A 1 
HETATM 7 C C8 XB6 . . . C 3 -6.668 61.903 79.221 1 80.86 ? C8 XB6 901 A 1 
HETATM 8 C C9 XB6 . . . C 3 -7.755 57.374 81.248 1 86.31 ? C9 XB6 901 A 1 
HETATM 9 C C10 XB6 . . . C 3 -7.009 56.124 81.589 1 81.98 ? C10 XB6 901 A 1 
HETATM 10 C C12 XB6 . . . C 3 -5.828 55.178 83.599 1 94.23 ? C12 XB6 901 A 1 
HETATM 11 C C13 XB6 . . . C 3 -4.742 55.113 84.439 1 99.39 ? C13 XB6 901 A 1 
HETATM 12 N N1 XB6 . . . C 3 -7.865 58.317 82.235 1 84.11 ? N1 XB6 901 A 1 
HETATM 13 N N2 XB6 . . . C 3 -8.224 58.311 85.848 1 82.26 ? N2 XB6 901 A 1 
HETATM 14 C C3 XB6 . . . C 3 -6.297 61.487 82.958 1 77.29 ? C3 XB6 901 A 1 
HETATM 15 N N3 XB6 . . . C 3 -9.642 56.708 84.964 1 87.25 ? N3 XB6 901 A 1 
HETATM 16 C C1 XB6 . . . C 3 -5.636 63.389 81.494 1 67.96 ? C1 XB6 901 A 1 
HETATM 17 C C15 XB6 . . . C 3 -5.407 52.958 85.265 1 104.4 ? C15 XB6 901 A 1 
HETATM 18 C C16 XB6 . . . C 3 -5.166 51.782 86.128 1 107.97 ? C16 XB6 901 A 1 
HETATM 19 C C17 XB6 . . . C 3 -3.921 51.561 86.692 1 112.94 ? C17 XB6 901 A 1 
HETATM 20 C C18 XB6 . . . C 3 -3.692 50.46 87.493 1 115.18 ? C18 XB6 901 A 1 
HETATM 21 C C19 XB6 . . . C 3 -4.696 49.563 87.735 1 112.9 ? C19 XB6 901 A 1 
HETATM 22 C C2 XB6 . . . C 3 -6.234 62.034 81.709 1 82.18 ? C2 XB6 901 A 1 
HETATM 23 C C20 XB6 . . . C 3 -5.928 49.757 87.178 1 103.85 ? C20 XB6 901 A 1 
HETATM 24 C C21 XB6 . . . C 3 -6.162 50.853 86.371 1 100.88 ? C21 XB6 901 A 1 
HETATM 25 C C22 XB6 . . . C 3 -6.505 53.027 84.429 1 98.05 ? C22 XB6 901 A 1 
HETATM 26 C C23 XB6 . . . C 3 -6.711 54.123 83.615 1 94.57 ? C23 XB6 901 A 1 
HETATM 27 C C24 XB6 . . . C 3 -8.357 57.992 83.521 1 81.83 ? C24 XB6 901 A 1 
HETATM 28 C C25 XB6 . . . C 3 -7.819 58.631 84.6 1 80.37 ? C25 XB6 901 A 1 
HETATM 29 C C26 XB6 . . . C 3 -9.148 57.334 86.061 1 83.99 ? C26 XB6 901 A 1 
HETATM 30 C C27 XB6 . . . C 3 -9.26 57.01 83.68 1 85.97 ? C27 XB6 901 A 1 
HETATM 31 C C28 XB6 . . . C 3 -6.385 60.396 85.576 1 79.21 ? C28 XB6 901 A 1 
HETATM 32 C C29 XB6 . . . C 3 -7.273 61.396 86.241 1 76.28 ? C29 XB6 901 A 1 
HETATM 33 C C30 XB6 . . . C 3 -6.48 62.306 87.167 1 73.6 ? C30 XB6 901 A 1 
HETATM 34 C C31 XB6 . . . C 3 -7.365 63.119 88.094 1 75.43 ? C31 XB6 901 A 1 
HETATM 35 C C32 XB6 . . . C 3 -6.686 64.368 88.601 1 75.46 ? C32 XB6 901 A 1 
HETATM 36 C C33 XB6 . . . C 3 -6.269 70.19 89.044 1 64.71 ? C33 XB6 901 A 1 
HETATM 37 C C34 XB6 . . . C 3 -6.935 71.517 89.211 1 65.28 ? C34 XB6 901 A 1 
HETATM 38 C C35 XB6 . . . C 3 -6.147 73.566 88.666 1 70.65 ? C35 XB6 901 A 1 
HETATM 39 C C36 XB6 . . . C 3 -3.797 74.102 87.963 1 70.56 ? C36 XB6 901 A 1 
HETATM 40 C C37 XB6 . . . C 3 -3.579 76.045 88.756 1 71.47 ? C37 XB6 901 A 1 
HETATM 41 C C38 XB6 . . . C 3 -3.193 77.317 89.178 1 69.51 ? C38 XB6 901 A 1 
HETATM 42 C C39 XB6 . . . C 3 -5.277 77.513 90.118 1 70.35 ? C39 XB6 901 A 1 
HETATM 43 C C40 XB6 . . . C 3 -4.839 75.641 89.09 1 68.42 ? C40 XB6 901 A 1 
HETATM 44 C C41 XB6 . . . C 3 -6.526 72.895 87.372 1 72.71 ? C41 XB6 901 A 1 
HETATM 45 C C42 XB6 . . . C 3 -7.632 72.045 87.958 1 73.11 ? C42 XB6 901 A 1 
HETATM 46 N N4 XB6 . . . C 3 -6.907 59.656 84.421 1 82.92 ? N4 XB6 901 A 1 
HETATM 47 N N5 XB6 . . . C 3 -4.967 74.386 88.59 1 66.41 ? N5 XB6 901 A 1 
HETATM 48 N N6 XB6 . . . C 3 -2.931 75.068 88.04 1 72.73 ? N6 XB6 901 A 1 
HETATM 49 N N7 XB6 . . . C 3 -2.01 77.847 88.926 1 65.72 ? N7 XB6 901 A 1 
HETATM 50 N N8 XB6 . . . C 3 -4.082 78.04 89.873 1 68.35 ? N8 XB6 901 A 1 
HETATM 51 N N9 XB6 . . . C 3 -5.751 76.335 89.767 1 71.86 ? N9 XB6 901 A 1 
HETATM 52 O O1 XB6 . . . C 3 -8.235 57.551 80.163 1 91.39 ? O1 XB6 901 A 1 
HETATM 53 O O10 XB6 . . . C 3 -6.962 67.2 90.491 1 61.2 ? O10 XB6 901 A 1 
HETATM 54 O O11 XB6 . . . C 3 -7.819 66.952 88.362 1 64.51 ? O11 XB6 901 A 1 
HETATM 55 O O12 XB6 . . . C 3 -5.376 67.719 88.927 1 65.06 ? O12 XB6 901 A 1 
HETATM 56 O O13 XB6 . . . C 3 -7.284 69.218 89.053 1 74.55 ? O13 XB6 901 A 1 
HETATM 57 O O14 XB6 . . . C 3 -5.913 72.484 89.508 1 64.52 ? O14 XB6 901 A 1 
HETATM 58 O O15 XB6 . . . C 3 -7.02 73.82 86.443 1 69.57 ? O15 XB6 901 A 1 
HETATM 59 O O16 XB6 . . . C 3 -8.677 72.943 88.282 1 74.73 ? O16 XB6 901 A 1 
HETATM 60 O O2 XB6 . . . C 3 -9.507 57.044 87.178 1 77.26 ? O2 XB6 901 A 1 
HETATM 61 O O3 XB6 . . . C 3 -9.76 56.407 82.749 1 89.4 ? O3 XB6 901 A 1 
HETATM 62 O O4 XB6 . . . C 3 -7.777 62.18 85.25 1 74.22 ? O4 XB6 901 A 1 
HETATM 63 O O5 XB6 . . . C 3 -5.715 61.499 87.97 1 77.7 ? O5 XB6 901 A 1 
HETATM 64 O O6 XB6 . . . C 3 -8.511 63.454 87.332 1 76.33 ? O6 XB6 901 A 1 
HETATM 65 O O7 XB6 . . . C 3 -7.304 64.91 89.776 1 68.01 ? O7 XB6 901 A 1 
HETATM 66 O O8 XB6 . . . C 3 -5.014 65.709 90.425 1 65 ? O8 XB6 901 A 1 
HETATM 67 O O9 XB6 . . . C 3 -6.817 65.559 92.159 1 81.83 ? O9 XB6 901 A 1 
HETATM 68 P P1 XB6 . . . C 3 -6.431 65.768 90.758 1 73.57 ? P1 XB6 901 A 1 
HETATM 69 P P2 XB6 . . . C 3 -6.816 67.741 89.061 1 67.89 ? P2 XB6 901 A 1 
#
_model_server_stats.io_time_ms              70 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    44 
_model_server_stats.query_time_ms           604 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           69 
#